View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085-Insertion-4 (Length: 838)

Name: NF2085-Insertion-4
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085-Insertion-4
NF2085-Insertion-4
[»] chr2 (11 HSPs)
chr2 (386-838)||(5815924-5816375)
chr2 (6-340)||(5815542-5815878)
chr2 (50-182)||(5815228-5815361)
chr2 (52-184)||(5795615-5795749)
chr2 (661-743)||(5814735-5814818)
chr2 (734-832)||(5813557-5813655)
chr2 (137-184)||(5797813-5797860)
chr2 (3-35)||(5827952-5827984)
chr2 (140-184)||(5828175-5828219)
chr2 (764-820)||(14389686-14389742)
chr2 (137-184)||(5772334-5772380)
[»] chr7 (4 HSPs)
chr7 (719-810)||(22130651-22130742)
chr7 (719-810)||(40500364-40500455)
chr7 (720-820)||(41397840-41397937)
chr7 (719-752)||(48572902-48572935)
[»] chr1 (6 HSPs)
chr1 (723-838)||(12181506-12181621)
chr1 (724-810)||(4033252-4033339)
chr1 (720-820)||(3447364-3447462)
chr1 (714-753)||(12403349-12403388)
chr1 (778-820)||(46135834-46135876)
chr1 (729-810)||(3449130-3449211)
[»] chr4 (6 HSPs)
chr4 (720-799)||(49058151-49058230)
chr4 (707-792)||(42430670-42430755)
chr4 (719-807)||(4897368-4897457)
chr4 (724-767)||(29067928-29067971)
chr4 (724-767)||(49408619-49408662)
chr4 (718-767)||(9021502-9021551)
[»] chr3 (2 HSPs)
chr3 (720-838)||(34618990-34619109)
chr3 (500-541)||(9754672-9754713)
[»] chr5 (2 HSPs)
chr5 (721-838)||(13858338-13858455)
chr5 (724-766)||(11664866-11664908)
[»] chr6 (1 HSPs)
chr6 (709-767)||(35026787-35026845)


Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 386 - 838
Target Start/End: Original strand, 5815924 - 5816375
Alignment:
Q  386 aatctagtttgtgcagcttacattggtttcggtgtgcttgggggtgtttaagtactcaaggtaattttcatatttattattaattgtctaatttgatttc 485  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5815924 aatctagtttgtgcagctttcattggtttcggtg--cttgggggtgtttaagtactcaaggtaattttcatatttattattaattgtctaatttgatttc 5816021  T
Q  486 ttcttacgattgactgtccttgtgttatttttgtaaaatggtgttataccaatagtggtggattgaaaataaagattagctaagagaaagttactctttt 585  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5816022 ttcttacgattggctgtccttgtgttatttttgtaaaatggtgttataccgatagtggtggattgaaaataaagcttagctaagagaaagttactctttt 5816121  T
Q  586 tgaaacttttgttttacttcatgtttcatggcttaagtgctgcccttcgaataactgagcaaccagaattccctcactctattccattcacttaacttca 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5816122 tgaaacttttgttttacttcatgtttcatggcttaagtgctgccctacgaataactgagcaaccagaattccctcactctattccattcacttaacttca 5816221  T
Q  686 ccaacatacatcccttctctattcagggccgatccaagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctc 785  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  5816222 ccaacatacatcccttctctattcagggccgattcaagggggctgccactaaagcaaaggttttaggtccccaagttttttaagcaccgtactaggcctc 5816321  T
Q  786 atatttttgtctttgaaaatatttttgtatgtc-aagtttgtaaacatattcac 838  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5816322 atatttttgtctttgaaaatatttttgtatgtcaaattttgtaaacatattcac 5816375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 6 - 340
Target Start/End: Original strand, 5815542 - 5815878
Alignment:
Q  6 caatgtatgcatacaagaaatactttataagaaaacaagtgtatatttatctttgaggtaatatgcactgtcttagaccatttttcatagtgactcaata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5815542 caatgtatgcatacaagaaatactttataagaaaacaagtgtatatttatctttgaggtaatatgcactgtcttagaccatttttcatagtgactcaata 5815641  T
Q  106 ttgcctatt-gctttgtacatttaaagatatatacattctttcataatacgtcacactttgttagtgggttgcaatgtcactaga-tacaatgccgaatc 203  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5815642 ttgcctatttgctttgtacatttaaagatatatacattctttcataatacgtcacactttgttagtgggttgcaatgtcactagaatacaatgccgaatc 5815741  T
Q  204 ctatcgtgaatatgtcctttcccacctctccaccatcatcaccaccacctctggcttcaccactgccttctcatcacaatcatccatatctcatgatttt 303  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5815742 ctatcgtgaatatgtcctttcccccctctccaccatcatcaccaccacctctggcttcaccactgccttctcatcacaatcatccacatctcatgatttt 5815841  T
Q  304 catatgatcaattttacttggactggcagccttcgtc 340  Q
    |||||||||||||||||||||||||||||||||||||    
T  5815842 catatgatcaattttacttggactggcagccttcgtc 5815878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 50 - 182
Target Start/End: Original strand, 5815228 - 5815361
Alignment:
Q  50 atttatctttgaggtaatatgcactgtctt-agaccatttttcatagtgactcaatattgcctattgctttgtacatttaaagatatatacattctttca 148  Q
    ||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  5815228 atttatctttgaggtaatatgtaccgtctttacaccatttttcatagtgactcaatattgcttattgctttgtacatttaaagaaatacacattctttca 5815327  T
Q  149 taatacgtcacactttgttagtgggttgcaatgt 182  Q
    ||||| |||||||||| |||| ||||||||||||    
T  5815328 taataagtcacactttattagagggttgcaatgt 5815361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 52 - 184
Target Start/End: Complemental strand, 5795749 - 5795615
Alignment:
Q  52 ttatctttgaggtaatatgcactgtctt-agaccatttttcatagtgactcaatattgcctattgctttgtacattt-aaagatatatacattctttcat 149  Q
    |||| |||||||||| |||||||||||| | ||| |||| ||||||||||||||||| | ||||||||||||||||| |||||| |||| |||||||  |    
T  5795749 ttatttttgaggtaacatgcactgtctttaaaccgttttccatagtgactcaatattacttattgctttgtacatttaaaagatttatagattcttttgt 5795650  T
Q  150 aatacgtcacactttgttagtgggttgcaatgtca 184  Q
    |||| ||||||||||||||| |||||| |||||||    
T  5795649 aataagtcacactttgttagggggttgtaatgtca 5795615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 661 - 743
Target Start/End: Complemental strand, 5814818 - 5814735
Alignment:
Q  661 actctattccattcacttaacttcaccaacata--catcccttctctattcagggccgatccaagggggctgccactaaagcaag 743  Q
    ||||||| ||| || ||||||||||||||||||  |||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  5814818 actctatcccagtcccttaacttcaccaacatatacatcccttctctattcagggccgacccaa-ggggctgtcactaaagcaag 5814735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 734 - 832
Target Start/End: Complemental strand, 5813655 - 5813557
Alignment:
Q  734 ctaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtc-aagtttgtaaacat 832  Q
    ||||||||| || |||||| ||||||||||||||  | || || || ||||| ||||||| |||||||||||||||||||||||| || |||||||||||    
T  5813655 ctaaagcaatggctttaggcccccaagttttttagtctccgtattaagcctcgtattttt-tctttgaaaatatttttgtatgtcaaattttgtaaacat 5813557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 5797813 - 5797860
Alignment:
Q  137 tacattctttcataatacgtcacactttgttagtgggttgcaatgtca 184  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  5797813 tacattctttcattataagtcacactttgttagggggttgcaatgtca 5797860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 5827984 - 5827952
Alignment:
Q  3 caacaatgtatgcatacaagaaatactttataa 35  Q
    |||||||||||||||||||||||||||||||||    
T  5827984 caacaatgtatgcatacaagaaatactttataa 5827952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 5828219 - 5828175
Alignment:
Q  140 attctttcataatacgtcacactttgttagtgggttgcaatgtca 184  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||    
T  5828219 attctttcatgataagtcacactttgttaatgggttgcaatgtca 5828175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 764 - 820
Target Start/End: Original strand, 14389686 - 14389742
Alignment:
Q  764 tttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtcaa 820  Q
    ||||||| || || |||||||||||||||| |||||||||||||||| ||| |||||    
T  14389686 tttaagccccgtattaggcctcatatttttatctttgaaaatattttcgtacgtcaa 14389742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 5772380 - 5772334
Alignment:
Q  137 tacattctttcataatacgtcacactttgttagtgggttgcaatgtca 184  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  5772380 tacattctttcataataagtcacactttattag-gggttgcaatgtca 5772334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 719 - 810
Target Start/End: Complemental strand, 22130742 - 22130651
Alignment:
Q  719 ccaagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttt 810  Q
    ||||||| |||||||| |||||||||| |||||| |||||||||||||| ||  | || | ||||||||||||||| |||||||||||||||    
T  22130742 ccaagggagctgccaccaaagcaagggctttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt 22130651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 719 - 810
Target Start/End: Original strand, 40500364 - 40500455
Alignment:
Q  719 ccaagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttt 810  Q
    ||||||| |||||||| |||||||||| |||||| |||||||||||||| ||  | || | ||||||||||||||| |||||||||||||||    
T  40500364 ccaagggagctgccaccaaagcaagggctttaggcccccaagttttttaggcttcgtattcggcctcatatttttgactttgaaaatatttt 40500455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 720 - 820
Target Start/End: Complemental strand, 41397937 - 41397840
Alignment:
Q  720 caagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtca 819  Q
    |||||||||||||||||||||||| | | |||| |||||| |||||| ||||   || |||||| |||||||||||||||||||||||||| ||| ||||    
T  41397937 caagggggctgccactaaagcaagagctataggcccccaaatttttttagca---tattaggccccatatttttgtctttgaaaatattttcgtacgtca 41397841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 719 - 752
Target Start/End: Complemental strand, 48572935 - 48572902
Alignment:
Q  719 ccaagggggctgccactaaagcaagggttttagg 752  Q
    |||||| |||||||||||||||||||||||||||    
T  48572935 ccaaggaggctgccactaaagcaagggttttagg 48572902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 723 - 838
Target Start/End: Complemental strand, 12181621 - 12181506
Alignment:
Q  723 gggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtcaagt 822  Q
    ||||||| |||||||| |||||| |||||| |||| ||||||||| |   | || |||||||| |||||||||||||||||||||||| ||| ||  | |    
T  12181621 gggggctaccactaaatcaagggctttaggcccccgagttttttaggtctcgtattaggcctcgtatttttgtctttgaaaatattttcgtacgttcaat 12181522  T
Q  823 ttgtaaacatattcac 838  Q
    ||||||||||||||||    
T  12181521 ttgtaaacatattcac 12181506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 724 - 810
Target Start/End: Complemental strand, 4033339 - 4033252
Alignment:
Q  724 ggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtcttt-gaaaatatttt 810  Q
    ||||||||||||||||||| ||||||||| ||| || ||||||| |  || || |||||||||||||||||||||| |||||||||||    
T  4033339 ggggctgccactaaagcaaaggttttaggcccctaatttttttaggttccgtattaggcctcatatttttgtctttggaaaatatttt 4033252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 720 - 820
Target Start/End: Complemental strand, 3447462 - 3447364
Alignment:
Q  720 caagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtca 819  Q
    |||||||| ||||||||||||||||| |||||| |||| ||||||| |||| || || | || ||||||  ||||||||| |||||||||||||| ||||    
T  3447462 caagggggatgccactaaagcaagggctttaggcccccgagtttttcaagccccatatttggtctcata--tttgtctttaaaaatatttttgtacgtca 3447365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 753
Target Start/End: Original strand, 12403349 - 12403388
Alignment:
Q  714 ccgatccaagggggctgccactaaagcaagggttttaggt 753  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  12403349 ccgatccaaggaggctgccactaaagcaagagttttaggt 12403388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 778 - 820
Target Start/End: Complemental strand, 46135876 - 46135834
Alignment:
Q  778 taggcctcatatttttgtctttgaaaatatttttgtatgtcaa 820  Q
    |||||||||||||||| |||||||||||||||| ||| |||||    
T  46135876 taggcctcatatttttatctttgaaaatattttcgtacgtcaa 46135834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 810
Target Start/End: Complemental strand, 3449211 - 3449130
Alignment:
Q  729 tgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttt 810  Q
    |||||| |||||||| ||||||| | ||| ||||||||| |  || || |||| ||||||||||| | ||||||||||||||    
T  3449211 tgccaccaaagcaagagttttagattcccgagttttttaggtcccgtattaggtctcatatttttatgtttgaaaatatttt 3449130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 720 - 799
Target Start/End: Original strand, 49058151 - 49058230
Alignment:
Q  720 caagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtcttt 799  Q
    |||||||| |||||||||||||| ||||||||| |||||||||||| |||  || || ||||| ||||||||||||||||    
T  49058151 caagggggttgccactaaagcaaaggttttaggcccccaagtttttcaagtcccgtattaggcatcatatttttgtcttt 49058230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 707 - 792
Target Start/End: Original strand, 42430670 - 42430755
Alignment:
Q  707 ttcagggccgatccaagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttt 792  Q
    |||||||||  ||||||||||||||||||||||||| || |||||| |||| ||||||||| |  || || |||||||||||||||    
T  42430670 ttcagggccagtccaagggggctgccactaaagcaaaggctttaggcccccgagttttttaggtcccgtattaggcctcatatttt 42430755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 807
Target Start/End: Original strand, 4897368 - 4897457
Alignment:
Q  719 ccaagggggctgccactaaagcaagggttttaggtccccaagtttt-ttaagcaccctactaggcctcatatttttgtctttgaaaatat 807  Q
    |||| ||||||| |||||||||||||| | |||| ||||||||||| ||| |  || || |||||||||||||||| | |||||||||||    
T  4897368 ccaaaggggctggcactaaagcaagggctctaggcccccaagttttattaggtcccgtattaggcctcatatttttatttttgaaaatat 4897457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 767
Target Start/End: Complemental strand, 29067971 - 29067928
Alignment:
Q  724 ggggctgccactaaagcaagggttttaggtccccaagtttttta 767  Q
    ||||||||||||||||||||||||||||| | |||| |||||||    
T  29067971 ggggctgccactaaagcaagggttttaggcctccaaatttttta 29067928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 724 - 767
Target Start/End: Original strand, 49408619 - 49408662
Alignment:
Q  724 ggggctgccactaaagcaagggttttaggtccccaagtttttta 767  Q
    ||||||||||||||||||||||||||||| | |||| |||||||    
T  49408619 ggggctgccactaaagcaagggttttaggccaccaaatttttta 49408662  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 718 - 767
Target Start/End: Original strand, 9021502 - 9021551
Alignment:
Q  718 tccaagggggctgccactaaagcaagggttttaggtccccaagtttttta 767  Q
    ||||||||||||||||||||||||  || |||||| |||||| |||||||    
T  9021502 tccaagggggctgccactaaagcagtggctttaggcccccaaatttttta 9021551  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 720 - 838
Target Start/End: Complemental strand, 34619109 - 34618990
Alignment:
Q  720 caagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtc- 818  Q
    ||||||||||||||||||||||||   |||||| |||||| | || ||  | || || ||||| ||||||||||||||||||||||||||| |||  ||     
T  34619109 caagggggctgccactaaagcaagaactttaggcccccaaatattgtactccccgtattaggcttcatatttttgtctttgaaaatattttcgtacatca 34619010  T
Q  819 aagtttgtaaacatattcac 838  Q
    || ||||||||||| |||||    
T  34619009 aattttgtaaacatgttcac 34618990  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 9754713 - 9754672
Alignment:
Q  500 tgtccttgtgttatttttgtaaaatggtgttataccaatagt 541  Q
    |||||||||| |||||||||| ||||||||||||| ||||||    
T  9754713 tgtccttgtgatatttttgtacaatggtgttatactaatagt 9754672  T

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Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 721 - 838
Target Start/End: Complemental strand, 13858455 - 13858338
Alignment:
Q  721 aagggggctgccactaaagcaagggttttaggtccccaagttttttaagcaccctactaggcctcatatttttgtctttgaaaatatttttgtatgtc-a 819  Q
    ||||| |||| ||||||||||| || |||||| ||| || ||||| | || || || |||||||||||||||||| |||||||||||||||| | ||| |    
T  13858455 aagggagctgacactaaagcaaaggctttaggccccgaa-tttttaacgccccgtattaggcctcatatttttgtttttgaaaatatttttgaacgtcaa 13858357  T
Q  820 agtttgtaaacatattcac 838  Q
    | ||||||||||| |||||    
T  13858356 attttgtaaacatgttcac 13858338  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 724 - 766
Target Start/End: Complemental strand, 11664908 - 11664866
Alignment:
Q  724 ggggctgccactaaagcaagggttttaggtccccaagtttttt 766  Q
    |||||||||| |||||||||||||||||| |||| ||||||||    
T  11664908 ggggctgccattaaagcaagggttttaggcccccgagtttttt 11664866  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 709 - 767
Target Start/End: Complemental strand, 35026845 - 35026787
Alignment:
Q  709 cagggccgatccaagggggctgccactaaagcaagggttttaggtccccaagtttttta 767  Q
    ||||||||| | |||||| ||||||||||||||||||||||| | |||  |||||||||    
T  35026845 cagggccgacctaaggggtctgccactaaagcaagggttttaagcccctgagtttttta 35026787  T

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