View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-5 (Length: 844)
Name: NF2085-Insertion-5
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 7 - 842
Target Start/End: Complemental strand, 40233099 - 40232257
Alignment:
| Q |
7 |
acgttgcgctagaatcgggttgttttgcaaaaagagtttcaatatttttactaaccatgttttgagcagtcaaaagctctaatctttgtgtctggacatc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40233099 |
acgttgcgctagaatcgggttgttttgcaaaaagagtttcaatatttttactaaccatgttttgagcagtcaaaagctctaatctttgtgtctggacatc |
40233000 |
T |
|
| Q |
107 |
tagcttcctgggacaactccttgtttatctcatctagct-------------actatttataaaagtcataacaagccaatttagaagagtggagtctat |
193 |
Q |
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| T |
40232999 |
tagcttcctgggacaactccttgtttatctcatctagctttccacataaagtactatttataaaagtcataacaagccaatttagaagagtggagtctat |
40232900 |
T |
|
| Q |
194 |
aactgaatcaccaaatgagcaatccaagacatgagtacgtgatttttgagatttttatatccttgtggagaccatccggtaacggtccaccggagtatca |
293 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40232899 |
aactgaatcaccaaatgggcaatccaagacatgagtatgtgatttttgagatttttatatccttgtggagaccatccggtaacggtccaccggagtatca |
40232800 |
T |
|
| Q |
294 |
gagtggttatttaatttctagtattttagctagcttgtcttt-aatcccaactttgaggtgacgattgttgaactacaagcgaatatggttgatcatact |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40232799 |
gagtggttatttaatttctagtattttagctagcttgtctttaaatcccaactttcaggtgacgattgttgaactacaagcgaatatggttgatcatact |
40232700 |
T |
|
| Q |
393 |
cttgtaagagcggtcgtttcttgtgataatcaccatgtttgagtttgttcctcttggtatcgaactccttttgattaatgatttgaattaagtttgtttt |
492 |
Q |
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| T |
40232699 |
cttgtaagagcggtcgtttcttgtgataatcaccatgtttgagtttgttcctcttggtatcgaactccttttgattaatgatttgaattaagtttgtttt |
40232600 |
T |
|
| Q |
493 |
gatnnnnnnnnnnnnnnnntgaattacctaattaataaatagcattgtcaagggtcctacgacatccacacaaacacaataacaataaagaaataaaaac |
592 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40232599 |
gat-aaaaaaaaataaaaatgaattacctaattaataaatagcattgtcaagggtcctacgacatcc------acacaataacaataaagaaataaaaac |
40232507 |
T |
|
| Q |
593 |
aagactagggaccccaaacagaagaggtttatgcaataaaaaagttgatttaggaaggtgaatggaattgagataaacaggaggcaaagggggtggctca |
692 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40232506 |
aagactagggaccccaaacagaagaggtttatgcaataaaaaagttgatttaggaaggtgaatggaattgagataaacaggaggcaaagggggtggctca |
40232407 |
T |
|
| Q |
693 |
agattatggtggagtcacaagggatctaataatgtgacactgcagcggcaggtagaagcacgcacatgaagcaaaggaggccactttttgtggacatgag |
792 |
Q |
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| T |
40232406 |
atattatggcggagtcacaagggatctaataatgtgacactgcagcggcaggcagaagcacgcacgtgaagcaaaggaggccactttttgtggacatgag |
40232307 |
T |
|
| Q |
793 |
cgttgcatctgcagtgtggttttgcacaaaggggtgggtggtaagactgt |
842 |
Q |
| |
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| T |
40232306 |
cattgcatctgcagtgtggttttgcacaaaggggtgggtggtaagactgt |
40232257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 17463297 - 17463416
Alignment:
| Q |
17 |
agaatcgggttgttttgcaaaaagagtttcaatatttttactaaccatgttttgagcagtcaaaagctctaatctttgtgtctggacatctagcttcctg |
116 |
Q |
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|||||| |||||||||| ||| | ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| || || |||| | |
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| T |
17463297 |
agaatctggttgttttgtcgaaatattttcaatatttccgttaaccatgttttgagtagtcaaaagctctaatctttgggtctggacctcaagtttcc-g |
17463395 |
T |
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| Q |
117 |
ggacaactccttgtttatctc |
137 |
Q |
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| T |
17463396 |
ggacaactccttgtttatctc |
17463416 |
T |
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