View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085-Insertion-6 (Length: 861)

Name: NF2085-Insertion-6
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085-Insertion-6
NF2085-Insertion-6
[»] chr1 (12 HSPs)
chr1 (7-497)||(9995329-9995819)
chr1 (195-501)||(10006213-10006518)
chr1 (7-270)||(10006525-10006780)
chr1 (584-791)||(9995038-9995242)
chr1 (290-356)||(9924124-9924190)
chr1 (421-490)||(50973530-50973599)
chr1 (769-858)||(9997350-9997441)
chr1 (394-448)||(41385916-41385970)
chr1 (361-446)||(9924021-9924106)
chr1 (769-858)||(9986189-9986280)
chr1 (289-323)||(126514-126548)
chr1 (770-815)||(10012041-10012086)
[»] chr8 (7 HSPs)
chr8 (59-282)||(41476554-41476768)
chr8 (404-492)||(8144795-8144883)
chr8 (377-492)||(29239460-29239575)
chr8 (406-492)||(17904221-17904306)
chr8 (389-465)||(6403348-6403424)
chr8 (289-356)||(29239357-29239424)
chr8 (9-63)||(41475984-41476038)
[»] chr2 (3 HSPs)
chr2 (359-492)||(35349711-35349844)
chr2 (362-492)||(19879866-19879996)
chr2 (377-493)||(34813773-34813890)
[»] chr6 (3 HSPs)
chr6 (291-492)||(8491443-8491648)
chr6 (326-453)||(1113265-1113392)
chr6 (289-331)||(6764098-6764140)
[»] chr5 (1 HSPs)
chr5 (359-490)||(16787456-16787587)
[»] chr7 (2 HSPs)
chr7 (584-843)||(3587178-3587434)
chr7 (772-861)||(7111119-7111210)
[»] chr4 (7 HSPs)
chr4 (377-492)||(36086867-36086981)
chr4 (294-356)||(4441602-4441664)
chr4 (287-332)||(24404900-24404945)
chr4 (292-356)||(2388923-2388987)
chr4 (377-448)||(4441497-4441568)
chr4 (397-492)||(9607690-9607785)
chr4 (408-451)||(13437034-13437077)
[»] scaffold0655 (1 HSPs)
scaffold0655 (406-501)||(3498-3594)


Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 7 - 497
Target Start/End: Complemental strand, 9995819 - 9995329
Alignment:
Q  7 ataatctttttgaatttctgagactctatgatcagatgaagaaaagcgtatggatccaaagctaaataagctcattcataaaaaagtacttgatagtggt 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995819 ataatctttttcaatttctgagactctatgatcagatgaagaaaagcgtatggatccaaagctaaataagctcattcataaaaaagtacttgatagtggt 9995720  T
Q  107 gttaaaagaaaacaaattgttaaaaaggctagtagtgataaagtgcgagagttctgaaatggaaaattcatcgagagcggtgaagaactgaagataggaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995719 gttaaaagaaaacaaattgttaaaaaggctagtagtgataaagtgcgagagttctgaaatggaaaattcatcgagagcggtgaagaactgaagataggaa 9995620  T
Q  207 ggttctctgacttggagcggagaaacatacgctcccgatttatatcttgccattctgcattctaccactgtgaataactcttactactagaaactctcaa 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9995619 ggttctctgacttggagcggagaaacatacgctcccgatttatatcttgccattctgcattctaccactgtgaataactcttactactagaaactctcaa 9995520  T
Q  307 ttttcctgtggattttcatgcggaaaatagtccgtaggaatacctgaggaattgttagtcataggaagtatcctgcgaatccagatcccgcaggcaaatc 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9995519 ttttcctgtggattttcatgcggaaaatagtccgtaggaatacctgaagatttgttagtcataggaagtatcctgcgaatccagatcccgcaggaaaatc 9995420  T
Q  407 cgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgcaggattgc 497  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9995419 cgcaggtatcttttattttgctgaggattttcctgcggaactaatgtcgaataatattttgacgtttccttaggtaattccgcaggattgc 9995329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 195 - 501
Target Start/End: Complemental strand, 10006518 - 10006213
Alignment:
Q  195 tgaagataggaaggttctctgacttggagcggagaaacatacgctcccgatttatatcttgccattctgcattctaccactgtgaataactcttactact 294  Q
    |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  10006518 tgaagataggaaggttctctaacttggagcggagatatatacgctcccgatttatatcttgccattctgcattctaccactgtgaataactcttaccgct 10006419  T
Q  295 agaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgaggaattgttagtcataggaagtatcctgcgaatccagatcc 394  Q
    |||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || |||||| ||||||||| ||||||    
T  10006418 agaaactctcgagtttcctgtggattttcatgcggaaaataatccgtaggaatacctgaggatttattagtcagagaaagtat-ctgcgaatcaagatcc 10006320  T
Q  395 cgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgcaggat 494  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  10006319 cgcaggcaaatccgcaggtattttttattttgatgaggattttcctgcggaactattgtcgaataatatttcgacgtttccttaggtaattccgcaggaa 10006220  T
Q  495 tgctgcg 501  Q
    |||||||    
T  10006219 tgctgcg 10006213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 10006780 - 10006525
Alignment:
Q  7 ataatctttttgaatttctgagactctatgatcagatgaagaaaagcgtatggatccaaagctaaataagctcattcataaaaaagtacttgatagtggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10006780 ataatctttttgaatttctgagactctatgatcagatgaagaaaagcgtatggatccaaagctaaataagctcattcataaaaaagtacttgatagcggt 10006681  T
Q  107 gttaaaagaaaacaaattgttaaaaaggctagtagtgataaagtgcgagagttctgaaatggaaaattcatcgagagcggtgaagaactgaagataggaa 206  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        | ||||||||||||    
T  10006680 gttaaaagaaaacaaattgttaaaaaggctagtagtgaaaaagtgcgagagttctgaaatggaaaattcatcgagagc--------agtgaagataggaa 10006589  T
Q  207 ggttctctgacttggagcggagaaacatacgctcccgatttatatcttgccattctgcattcta 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10006588 ggttctctgacttggagcggagaaacatacgctcccgatttatatcttgccattcggcattcta 10006525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 584 - 791
Target Start/End: Complemental strand, 9995242 - 9995038
Alignment:
Q  584 gtggttcttacaccctcgagggttgttatgtgttgttgtattaccttatggatgnnnnnnncccttttgggtagtaaggccttttgtccctccacccttg 683  Q
    |||||||||||| |||||||||||||||||| ||||||||||||| ||||||||       |||||||||   |||||||||||||||||||||| ||||    
T  9995242 gtggttcttacagcctcgagggttgttatgtattgttgtattaccctatggatgtttttttcccttttgg---gtaaggccttttgtccctccactcttg 9995146  T
Q  684 tgtacctttgttttttcttgtttatttaggtgctacagatccgtttgcaccagtttgtctaaaagaatactaacattgtccttgcctcttccacaatcag 783  Q
    |||||||||||||||| | ||||||||||||||| ||||||| |||||||| ||||||||||||||||||| || |||||||||||||||||||||||||    
T  9995145 tgtacctttgttttttatagtttatttaggtgctgcagatccatttgcaccggtttgtctaaaagaatactgacgttgtccttgcctcttccacaatcag 9995046  T
Q  784 ccacatta 791  Q
    ||||||||    
T  9995045 ccacatta 9995038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 9924190 - 9924124
Alignment:
Q  290 ctactagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgagga 356  Q
    |||||||||||||||| |||||||| |||||| ||||||||| |||||||| |||||||||||||||    
T  9924190 ctactagaaactctcatttttcctgcggatttacatgcggaagatagtccgcaggaatacctgagga 9924124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 490
Target Start/End: Complemental strand, 50973599 - 50973530
Alignment:
Q  421 attttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgca 490  Q
    |||||| ||||||||||||||||||||||||| | |||| |||||  |||||| ||||||||||||||||    
T  50973599 attttgttgaggattttcctgcggaactattgactaatattatttcaacgttttcttaggtaattccgca 50973530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 769 - 858
Target Start/End: Complemental strand, 9997441 - 9997350
Alignment:
Q  769 ctcttccacaatcagccacattatctgattaattcaaactaactctcg-tgaaaataaattatactaactacac-cattatgttttgatttt 858  Q
    ||||| ||||||| ||||||||| |  ||| ||||||||||||||||| ||||| ||| |||||||||||||||  ||| ||||||||||||    
T  9997441 ctctttcacaatcggccacattaccccatttattcaaactaactctcgttgaaattaagttatactaactacacaaattttgttttgatttt 9997350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 41385970 - 41385916
Alignment:
Q  394 ccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaact 448  Q
    ||||||| |||||||||||||  ||||||||||||||||||||| || |||||||    
T  41385970 ccgcaggaaaatccgcaggtaaattttattttgctgaggatttttctacggaact 41385916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 446
Target Start/End: Complemental strand, 9924106 - 9924021
Alignment:
Q  361 ttagtcataggaagtatcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaa 446  Q
    |||||||||  |||| |||||||||||| ||| ||||||| | |||||| |||| |||||||||| ||| ||| || |||||||||    
T  9924106 ttagtcataccaagtttcctgcgaatccggattccgcaggaacatccgcgggtaacttttattttactggggaattacctgcggaa 9924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 769 - 858
Target Start/End: Complemental strand, 9986280 - 9986189
Alignment:
Q  769 ctcttccacaatcagccacattatctgattaattcaaactaactctcg-tgaaaataaattatactaactaca-ccattatgttttgatttt 858  Q
    ||||||||||||| || |||||  |  ||||||||||| ||||||||| ||||| ||| |||||||||||||| | |||||||||| |||||    
T  9986280 ctcttccacaatcggctacatttccccattaattcaaattaactctcgttgaaattaagttatactaactacagcaattatgttttaatttt 9986189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 126514 - 126548
Alignment:
Q  289 actactagaaactctcaattttcctgtggattttc 323  Q
    |||||||||||||||| ||||||||||||||||||    
T  126514 actactagaaactctcgattttcctgtggattttc 126548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 770 - 815
Target Start/End: Complemental strand, 10012086 - 10012041
Alignment:
Q  770 tcttccacaatcagccacattatctgattaattcaaactaactctc 815  Q
    |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  10012086 tcttccacaatcggccacattaacccattaattcaaactaactctc 10012041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 5e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 59 - 282
Target Start/End: Original strand, 41476554 - 41476768
Alignment:
Q  59 gatccaaagctaaataagctcattcataaaaaagtacttgatagtggtgttaaaagaaaacaaattgttaaaaaggctagtagtgataaagtgcgagagt 158  Q
    |||||||||||  |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||    
T  41476554 gatccaaagcttgataagctctttcataagaaagtacttgatagtggtgttaaaagaaaacagattgttaaaaaagctaatagtgataaagtgcgagagt 41476653  T
Q  159 tctgaaatggaaaattcatcgagagcggtgaagaactgaagataggaaggttctctgact-tggagcggagaaacatacgctcccgatttatatcttgcc 257  Q
    ||||||||||||||||||||||||||        | ||||||||||||  |  ||||||| | |||| |||||| ||| ||||| ||||| ||||||| |    
T  41476654 tctgaaatggaaaattcatcgagagc--------agtgaagataggaaaat--tctgactcttgagcagagaaaaataggctcctgatttttatcttgac 41476743  T
Q  258 attctgcattctaccactgtgaata 282  Q
    |||||||||||||||| ||||||||    
T  41476744 attctgcattctaccattgtgaata 41476768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 404 - 492
Target Start/End: Complemental strand, 8144883 - 8144795
Alignment:
Q  404 atccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgcagg 492  Q
    ||||||||||| || |||| | |||||| |||||||||||||| |||| || |||| |||||  ||||||||||||| |||||||||||    
T  8144883 atccgcaggtaactattatatcgctgagaattttcctgcggaattattatccaatattatttctacgtttccttaggaaattccgcagg 8144795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 492
Target Start/End: Original strand, 29239460 - 29239575
Alignment:
Q  377 tcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttcct 476  Q
    ||||||| || ||||| ||  ||| |||||||||||||   ||||||||||||||||||||| |||||| |||||  |||||| |||||  ||||||||     
T  29239460 tcctgcggatacagataccagaggaaaatccgcaggtaaagtttattttgctgaggattttcttgcggatctattcacgaatattatttcaacgtttcca 29239559  T
Q  477 taggtaattccgcagg 492  Q
    | || |||||||||||    
T  29239560 ttggaaattccgcagg 29239575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 406 - 492
Target Start/End: Complemental strand, 17904306 - 17904221
Alignment:
Q  406 ccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgcagg 492  Q
    ||||||||| ||||||||| ||||||||||||||||| ||  ||||| |||||| |||||  ||||||||||||| |||||| ||||    
T  17904306 ccgcaggtaacttttatttagctgaggattttcctgc-gatatattgacgaatattatttcaacgtttccttaggaaattccacagg 17904221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 6403424 - 6403348
Alignment:
Q  389 agatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattt 465  Q
    |||| ||||||| | ||||||||||| || |||||||||||||||||| ||||||||| |||| || |||| |||||    
T  6403424 agatgccgcaggaacatccgcaggtacctattattttgctgaggatttacctgcggaattattatcaaatattattt 6403348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 29239357 - 29239424
Alignment:
Q  289 actactagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgagga 356  Q
    ||||| ||||| |||| |||| |||| |||||||||||||||||| | |||| || ||||||||||||    
T  29239357 actaccagaaattctctatttccctgcggattttcatgcggaaaacaatccgcagcaatacctgagga 29239424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 41475984 - 41476038
Alignment:
Q  9 aatctttttgaatttctgagactctatgatcagatgaagaaaagcgtatggatcc 63  Q
    ||||||||||| | ||| |||||||||||||||||||||| ||| | ||||||||    
T  41475984 aatctttttgactctcttagactctatgatcagatgaagagaagggaatggatcc 41476038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 359 - 492
Target Start/End: Complemental strand, 35349844 - 35349711
Alignment:
Q  359 tgttagtcataggaagtatcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaat 458  Q
    ||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||| |||| |  |||||||||||||||||||||||||||||  ||||    
T  35349844 tgttagtcatacgaagtatcctgcgaatccggatcccacaggaaaatccgcaggtaactttaaaattgctgaggattttcctgcggaactattgaggaat 35349745  T
Q  459 aatattttgacgtttccttaggtaattccgcagg 492  Q
    | ||||| ||||||||||||||||||||||||||    
T  35349744 attatttggacgtttccttaggtaattccgcagg 35349711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 362 - 492
Target Start/End: Original strand, 19879866 - 19879996
Alignment:
Q  362 tagtcataggaagtatcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataat 461  Q
    ||||| || ||||| ||||||||||||| |  |||| |  ||||||||||||| |||||| || ||||||||||||||| || ||||||||  ||||| |    
T  19879866 tagtcttacgaagtttcctgcgaatccataggccgctgcaaaatccgcaggtaacttttacttagctgaggattttccttcgaaactattgaggaatatt 19879965  T
Q  462 attttgacgtttccttaggtaattccgcagg 492  Q
    ||||| | ||||||||||| |||||||||||    
T  19879966 attttaatgtttccttaggaaattccgcagg 19879996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 493
Target Start/End: Original strand, 34813773 - 34813890
Alignment:
Q  377 tcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaata-atattttgacgtttcc 475  Q
    ||||||| || ||||| ||||||| | ||||| ||||| || |||||| |||||| |||||||||||||| |||  || ||||  ||| || ||||||||    
T  34813773 tcctgcgcattcagatgccgcaggaacatccgtaggtaactattatttagctgagaattttcctgcggaattatcatccaatagctatatttacgtttcc 34813872  T
Q  476 ttaggtaattccgcagga 493  Q
    | | ||||||||||||||    
T  34813873 tcacgtaattccgcagga 34813890  T

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Target: chr6 (Bit Score: 73; Significance: 7e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 291 - 492
Target Start/End: Complemental strand, 8491648 - 8491443
Alignment:
Q  291 tactagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgaggaatt----gttagtcataggaagtatcctgcgaat 386  Q
    ||||||||||||||  |||||||| |||| ||||||||||||||| |||  ||||||||||||||| ||    |  ||||||| ||||| |||||| |||    
T  8491648 tactagaaactctcgtttttcctgcggatgttcatgcggaaaataatccacaggaatacctgaggattttaatgaaagtcatacgaagtttcctgccaat 8491549  T
Q  387 ccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattc 486  Q
    |||||  ||| ||| || ||||||||||  |||||||||||||||||||||| ||||||| | |||||||||| | |||  ||||||||||||  |||||    
T  8491548 ccagaagccgtaggaaactccgcaggtaagttttattttgctgaggattttcttgcggaattgttgtcgaatattttttcaacgtttccttagaaaattc 8491449  T
Q  487 cgcagg 492  Q
    ||||||    
T  8491448 cgcagg 8491443  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 326 - 453
Target Start/End: Complemental strand, 1113392 - 1113265
Alignment:
Q  326 gcggaaaatagtccgtaggaatacctgaggaattgttagtcataggaagtatcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttatttt 425  Q
    |||||||||| |||| ||||||||||||||| ||   ||||||| ||||  ||||||||| |   |  |||| | |||||||||||||| |||||||||     
T  1113392 gcggaaaataatccgcaggaatacctgaggattttgcagtcatatgaagcttcctgcgaaacagtacgccgctgacaaatccgcaggtaacttttattta 1113293  T
Q  426 gctgaggattttcctgcggaactattgt 453  Q
    | ||||||||||||||||||||||||||    
T  1113292 gttgaggattttcctgcggaactattgt 1113265  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 6764140 - 6764098
Alignment:
Q  289 actactagaaactctcaattttcctgtggattttcatgcggaa 331  Q
    ||||| ||||||||||||||||||||||||||| | |||||||    
T  6764140 actacaagaaactctcaattttcctgtggatttgcctgcggaa 6764098  T

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Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 359 - 490
Target Start/End: Complemental strand, 16787587 - 16787456
Alignment:
Q  359 tgttagtcataggaagtatcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaat 458  Q
    |||| |||||| || || |||||||||||||||  ||||||| | |||||||||||   |||| |||||||||||||||||||||||||||||| ||| |    
T  16787587 tgtttgtcatacgaggtttcctgcgaatccagaagccgcaggaacatccgcaggtacactttaatttgctgaggattttcctgcggaactattgacgatt 16787488  T
Q  459 aatattttgacgtttccttaggtaattccgca 490  Q
    | |||||  || |||||||||| |||||||||    
T  16787487 attatttcaacatttccttaggaaattccgca 16787456  T

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Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 584 - 843
Target Start/End: Original strand, 3587178 - 3587434
Alignment:
Q  584 gtggttcttacaccctcgagggttgttatgtgttgttgtattaccttatggatgnnnnnnnc-ccttttgggtagtaaggccttttgtccctccaccctt 682  Q
    |||||||||| |||||| ||||||| ||||| | ||||||||||||||||||||         |||||||||||   ||||||| |||| | | || |||    
T  3587178 gtggttcttataccctcaagggttgctatgtatcgttgtattaccttatggatgtttttttttccttttgggta---aggccttatgtcaccctactctt 3587274  T
Q  683 gtgtacctttg-ttttttcttgtttatttaggtgctacagatccgtttgcaccagtttgtctaaaagaatactaacattgtccttgcctcttccacaatc 781  Q
       |||||||| |||||| | ||||||||||||| | |||||  || ||||||  ||||||||    |||||  |||||| |||  ||||||||||||||    
T  3587275 ---tacctttgcttttttatagtttatttaggtgttgcagatttgtctgcacccctttgtctaggcaaatacctacattgccctgacctcttccacaatc 3587371  T
Q  782 agccacattatctgattaattcaaactaactctc-gtgaaaataaattatactaactacacca 843  Q
    |||||||||| ||||||||||||||| |||||||  ||||| ||| |||||||||||||||||    
T  3587372 agccacattacctgattaattcaaaccaactctctttgaaactaagttatactaactacacca 3587434  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 772 - 861
Target Start/End: Original strand, 7111119 - 7111210
Alignment:
Q  772 ttccacaatcagccacattatctgattaattcaaactaactctcg-tgaaaataaattatactaactacacc-attatgttttgatttttga 861  Q
    |||||||||| | ||||||| |  ||||||||||||||||||| | ||||| ||| |||||||||||||||| ||| |||||||||||||||    
T  7111119 ttccacaatcggtcacattaccccattaattcaaactaactcttgttgaaactaagttatactaactacaccaattttgttttgatttttga 7111210  T

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Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 377 - 492
Target Start/End: Complemental strand, 36086981 - 36086867
Alignment:
Q  377 tcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttcct 476  Q
    |||||||||| ||||| ||||||| ||||| || |||| |||| |||| ||||||||||||||||| ||||  ||| |||||| |||||  |||||||||    
T  36086981 tcctgcgaattcagataccgcaggaaaatctgcgggtaactttaattt-gctgaggattttcctgccgaaccgttgacgaatattatttgaacgtttcct 36086883  T
Q  477 taggtaattccgcagg 492  Q
    |||| |||||||||||    
T  36086882 taggaaattccgcagg 36086867  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 4441664 - 4441602
Alignment:
Q  294 tagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgagga 356  Q
    ||||| ||||| ||||||||| |||||| |||||||||| || |||| |||||||||||||||    
T  4441664 tagaatctctcgattttcctgcggatttacatgcggaaattattccgcaggaatacctgagga 4441602  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 24404900 - 24404945
Alignment:
Q  287 ttactactagaaactctcaattttcctgtggattttcatgcggaaa 332  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||    
T  24404900 ttactactagaaactctcaattttcctgcagattttcatgtggaaa 24404945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 2388987 - 2388923
Alignment:
Q  292 actagaaactctcaattttcctgtggattttcatgcggaaaatagtccgtaggaatacctgagga 356  Q
    |||||||||||||  |||||||| |||||| |||| | |||||| |||| |||||||||||||||    
T  2388987 actagaaactctcgtttttcctgcggatttgcatgggcaaaataatccgcaggaatacctgagga 2388923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 448
Target Start/End: Complemental strand, 4441568 - 4441497
Alignment:
Q  377 tcctgcgaatccagatcccgcaggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaact 448  Q
    |||||||||||| ||  ||||||| ||||||  ||||| |||||||||||| ||||||||| || |||||||    
T  4441568 tcctgcgaatcccgaaaccgcaggaaaatccaaaggtaacttttattttgcagaggatttttctacggaact 4441497  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 492
Target Start/End: Complemental strand, 9607785 - 9607690
Alignment:
Q  397 caggcaaatccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgcagg 492  Q
    |||| ||||||||||||| ||  ||||||||||| |||||  |||||| ||||||| ||||||  ||||   |||||||||||  |||||||||||    
T  9607785 caggaaaatccgcaggtaactactattttgctgaagatttctctgcggtactattggcgaatatgatttcagcgtttccttagtaaattccgcagg 9607690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 451
Target Start/End: Complemental strand, 13437077 - 13437034
Alignment:
Q  408 gcaggtatcttttattttgctgaggattttcctgcggaactatt 451  Q
    ||||||| || |||||||||||||||||||||||||||| ||||    
T  13437077 gcaggtaactattattttgctgaggattttcctgcggaattatt 13437034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 406 - 501
Target Start/End: Complemental strand, 3594 - 3498
Alignment:
Q  406 ccgcaggtatcttttattttgctgaggattttcctgcggaactattgtcgaataatattttgacgtttccttaggtaattccgcagg-attgctgcg 501  Q
    ||||||||| | |||||||||||||||||||| |||||||||| ||| |||||  |||||  ||||||||| ||| ||||| ||||| |||||||||    
T  3594 ccgcaggtaacatttattttgctgaggatttttctgcggaactgttgacgaatgttatttcaacgtttcctaaggaaattctgcaggtattgctgcg 3498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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