View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085-Insertion-7 (Length: 766)

Name: NF2085-Insertion-7
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085-Insertion-7
NF2085-Insertion-7
[»] chr1 (17 HSPs)
chr1 (362-766)||(1350508-1350911)
chr1 (7-361)||(30110999-30111352)
chr1 (11-348)||(41061231-41061568)
chr1 (7-361)||(17707708-17708062)
chr1 (14-350)||(47106765-47107101)
chr1 (124-361)||(10711235-10711472)
chr1 (11-244)||(26720415-26720648)
chr1 (7-142)||(41181922-41182057)
chr1 (7-84)||(49969039-49969116)
chr1 (7-110)||(28098286-28098389)
chr1 (378-437)||(1351094-1351153)
chr1 (9-87)||(12173922-12174000)
chr1 (7-84)||(10711464-10711541)
chr1 (7-84)||(25591825-25591902)
chr1 (7-87)||(21335570-21335650)
chr1 (7-42)||(47587034-47587069)
chr1 (7-60)||(7397087-7397140)
[»] chr7 (6 HSPs)
chr7 (7-361)||(4076987-4077341)
chr7 (7-361)||(29113623-29113977)
chr7 (7-361)||(34231411-34231765)
chr7 (7-237)||(28060290-28060519)
chr7 (7-361)||(7458745-7459099)
chr7 (47-110)||(44784879-44784942)
[»] chr3 (18 HSPs)
chr3 (11-360)||(50543937-50544286)
chr3 (7-356)||(19221837-19222184)
chr3 (7-159)||(24124117-24124269)
chr3 (7-361)||(47536980-47537334)
chr3 (11-350)||(26845587-26845926)
chr3 (7-356)||(33121396-33121745)
chr3 (7-237)||(32093115-32093345)
chr3 (7-176)||(11639678-11639847)
chr3 (155-241)||(24121812-24121898)
chr3 (44-241)||(25341540-25341737)
chr3 (7-84)||(36635150-36635227)
chr3 (8-141)||(49500625-49500758)
chr3 (7-227)||(8695099-8695319)
chr3 (7-227)||(9046986-9047206)
chr3 (32-87)||(23818314-23818369)
chr3 (8-87)||(38898682-38898761)
chr3 (8-87)||(43122014-43122093)
chr3 (7-115)||(46908987-46909095)
[»] chr5 (8 HSPs)
chr5 (7-338)||(40090051-40090382)
chr5 (7-356)||(4922946-4923295)
chr5 (7-348)||(7000852-7001193)
chr5 (41-350)||(6048969-6049278)
chr5 (11-356)||(20208798-20209143)
chr5 (7-361)||(4415774-4416128)
chr5 (7-319)||(34874559-34874867)
chr5 (32-110)||(20591874-20591952)
[»] chr4 (14 HSPs)
chr4 (7-361)||(20395308-20395662)
chr4 (11-361)||(53487027-53487377)
chr4 (7-156)||(18935380-18935529)
chr4 (7-361)||(34322393-34322747)
chr4 (7-356)||(53779757-53780106)
chr4 (7-361)||(30273886-30274240)
chr4 (7-361)||(42777950-42778304)
chr4 (7-361)||(18106630-18106984)
chr4 (7-356)||(29213060-29213409)
chr4 (7-356)||(10563388-10563737)
chr4 (7-226)||(42823156-42823374)
chr4 (7-240)||(449763-449996)
chr4 (7-172)||(31863978-31864143)
chr4 (7-83)||(12881037-12881113)
[»] chr8 (6 HSPs)
chr8 (7-361)||(17658543-17658897)
chr8 (7-361)||(23679875-23680228)
chr8 (11-356)||(26031208-26031553)
chr8 (44-350)||(45255913-45256219)
chr8 (7-110)||(11155230-11155333)
chr8 (9-87)||(36156871-36156949)
[»] chr6 (7 HSPs)
chr6 (7-361)||(17079265-17079619)
chr6 (7-361)||(11060933-11061284)
chr6 (7-361)||(9199326-9199680)
chr6 (11-210)||(17874026-17874225)
chr6 (7-110)||(15311315-15311418)
chr6 (7-110)||(15316609-15316712)
chr6 (7-188)||(19232605-19232786)
[»] chr2 (4 HSPs)
chr2 (7-361)||(1379794-1380148)
chr2 (7-361)||(2999822-3000176)
chr2 (7-176)||(7075824-7075993)
chr2 (7-84)||(11026812-11026889)
[»] scaffold0179 (1 HSPs)
scaffold0179 (11-356)||(7244-7589)
[»] scaffold0007 (1 HSPs)
scaffold0007 (7-361)||(181841-182195)
[»] scaffold0308 (1 HSPs)
scaffold0308 (7-139)||(11790-11922)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 362 - 766
Target Start/End: Original strand, 1350508 - 1350911
Alignment:
Q  362 ctatataaatcttaaggtactacttaatgtaaacacattctcacgttatcaatattatttcaatttcatttttctacagttttatctcaattataaattc 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1350508 ctatataaatcttaaggtactacttaatgtaaacacattctcacgtaatcaatattatttcaatttaatttttctacagttttatctcaattataaattc 1350607  T
Q  462 tnnnnnnntttgtaatattgtatcagatagaataattattccgctatattctttctcnnnnnnnnnnttgagaaaaatttcattgaatctttgtcatttt 561  Q
    |       |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  1350608 tataaaattttgtaatattgtatcagatagaataattattccgctatattctttctcaaaaaaaat-ttgagaaaaatttcattgaatctttgtcatttt 1350706  T
Q  562 atttttacttctttctattttgattcttaaagtaagtttctgatcaagattataaactttgagcttttcttttgtgttgtggctgattccaagacactca 661  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1350707 atttttacttctttctattttgattcttgaagtaagtttctgatcaagattctaaactttgagcttttcttttgtgttgtgcctgattccaagacactca 1350806  T
Q  662 aactaaggtcaaggaactaataaacaaggaattagttcaaaatctttgtataaaaaatttatggatgattgtgtannnnnnnagtagatgtatttaggca 761  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  1350807 aactaaggtcaaggaactaataaacaaggaattagttcaaaatctttgtataaaaaatttatggatgattgtgtatttttttagtagatgtatttaggca 1350906  T
Q  762 tttta 766  Q
    |||||    
T  1350907 tttta 1350911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 30111352 - 30110999
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||| |||||||| | | |||||||| | || |||||||| |||||||||||||| || |||||||||||||| ||| | | ||| ||||| ||     
T  30111352 agttacaactttattaaaaatcctgttattatgttcgttccataagacccaaacgcacaagagccaaataagctgaagaaagtctctagtagctttacct 30111253  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||| ||||| ||||  || |||||||| ||||    
T  30111252 ccacctgtcaagttcacaaactgaagaaaatgatctagaagaacattggtatcaacacctataatacccagccaatgacgcaccagaggccataaagatg 30111153  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   ||||||||||| ||| |||||||||||| || |||| | |||||| | ||||||| ||| ||||||| | ||||||| ||||| |||||  ||    
T  30111152 aaaa-acatcacaagatagaaacaaatgttgcgccttttcacacatgccacagtctgaaacacacaaagaagctcttgtgtcaagcacccgtctttgagc 30111054  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||  ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  30111053 caaattgactttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 30110999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 41061568 - 41061231
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||||  |||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||  | |||   ||||| |||||||    
T  41061568 acaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagtcaaatcagctgaaggaaatctcgaaccgctttaccaccac 41061469  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || ||||| ||||||||| ||||| |||||| | ||||| |||||||| ||||||||||||||||| |||| ||| |  |  |||||||| || |||||    
T  41061468 ctgacaagtgcacaaactgaagaaagtgatctagaagaacattggtatcaacacctataatacccagccaattgcgaaccataggccataaagaagaaaa 41061369  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
     | ||||||||||||||| ||||||||||||||| | |  | |||||||  ||||||| |||| |||||||  |  ||||||||||||||   | |||||    
T  41061368 agcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctgaatcaatcacccttctaaggaccaaa 41061269  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctcca 348  Q
    ||||||||| |||||||||||| ||||| |||||||||    
T  41061268 ttatctttagtaggcaatctattacgaagcaacctcca 41061231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 17707708 - 17708062
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||  | | | | ||||| ||     
T  17707708 agttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaaatctctaatagctttacct 17707807  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||| | |||||||||||  | ||||| || ||||| ||||| | ||||||||| ||||||||||  || |||||||| ||||    
T  17707808 ccacctgtcaagttcacaaaccgaagaaaatgatcaagaagaacatttgtatcaacaccaagaatacccagccaatggcgcaccagaggccataaagatg 17707907  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| |  |||||||||| ||| ||||||||||| ||| |||  | |||||||| ||||||| ||| ||||||||    ||||| ||||| |||||   |    
T  17707908 aaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagcacccgtctttgaac 17708007  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  17708008 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 17708062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 47107101 - 47106765
Alignment:
Q  14 acattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccacttg 113  Q
    |||||||| || ||| ||| ||| || || ||||||||||||||||| ||||| || |||||||||||||| ||  | | ||| | ||| ||||||| ||    
T  47107101 acattattgaacagcctgtcattgcgttcgttccataaaacccaaacacacaagagccaaataagctgaagaaaatctctagtagttttaccaccacctg 47107002  T
Q  114 tcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaaggt 213  Q
    |||||||||||||||| |||||||||||  | ||||| |||||||| || |||||||||||||  || || ||||  || | |||||| | |||||| |     
T  47107001 tcaagttcacaaactgaagaaaatgatcgagaagaacattggtatcaacgcctataatacccaaccattgacgcaccagagcccataaaggtgaaaatgc 47106902  T
Q  214 atcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaatta 313  Q
    ||||||||||||||  ||||||||||||||| |||  | |||||||| ||||||| ||| ||||||||   |||| ||||||||||||  | ||||||||    
T  47106901 atcacaagataaaatcaaatgttgcgccgtttcactcatgccacaatttgaaacacacaaagaagcttctatgtcgatcacccttcttcggaccaaatta 47106802  T
Q  314 tctttaataggcaatctatcacgaaccaacctccaag 350  Q
    |||||| |||||||||||||||||| |||||||||||    
T  47106801 tctttagtaggcaatctatcacgaagcaacctccaag 47106765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 124 - 361
Target Start/End: Complemental strand, 10711472 - 10711235
Alignment:
Q  124 aaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaaggtatcacaagat 223  Q
    |||||| |||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||  || |||||||| |||||||| | ||||||||||    
T  10711472 aaactgaagaaaatgatctagtagaacattggtatcaacacctataatacccagccaatggcgcaccagaggccataaagatgaaaaagcatcacaagat 10711373  T
Q  224 aaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaattatctttaatag 323  Q
    | ||| ||||||||||||||| |||  | |||||||| ||||||| |||| |||||||  ||||||| ||||| |||||   ||| |||| ||||| |||    
T  10711372 agaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatggaagcttctgtgtcaagcacccatctttgaaccatattaactttagtag 10711273  T
Q  324 gcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||||||||||| ||||||| ||| ||||| ||||    
T  10711272 gcaatctatcacgaagcaacctctaagaaaataaagaa 10711235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 26720415 - 26720648
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||||  |||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||  | |||   ||||| |||||||    
T  26720415 acaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttaccaccac 26720514  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || ||||| ||||||||| ||||| |||||| | ||||| ||||| || ||||||||||||||||| |||| |||||  |  |||||||| || |||||    
T  26720515 ctgacaagtgcacaaactgaagaaagtgatctagaagaacattggtgtcaacacctataatacccagccaattgcgcaccataggccataaagaagaaaa 26720614  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgtt 244  Q
     | ||||||||||||||| |||||||||||||||    
T  26720615 agcatcacaagataaaaacaaatgttgcgccgtt 26720648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 41181922 - 41182057
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||| | | ||| ||||||||     
T  41181922 agttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaagtctctagtagctttgcct 41182021  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatct 142  Q
    |||| |||||||||||||||||| ||||||||||||    
T  41182022 ccacctgtcaagttcacaaactgaagaaaatgatct 41182057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 49969039 - 49969116
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaag 84  Q
    |||||||||||||||||| ||  |||||||||| || ||||||||||| ||||| ||||| || ||||||||||||||    
T  49969039 agttacaacattattaaaaagtctgttattacgttcgttccataaaactcaaacacacaagagccaaataagctgaag 49969116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 28098389 - 28098286
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||||||  | ||| | ||||| |||||||||||||| | ||| |||||||| || ||||||||||||||||| |  ||  |||||||||||    
T  28098389 agttacaacattattggaaagcctattattgcgctcattccataagatccacacgcacaatagccaaataagctgaaggaatgaccgctttgctttgcca 28098290  T
Q  107 ccac 110  Q
    ||||    
T  28098289 ccac 28098286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 1351094 - 1351153
Alignment:
Q  378 gtactacttaatgtaaacacattctcacgttatcaatattatttcaatttcatttttcta 437  Q
    ||||| ||| |||||||||||||||||| | |||||||||| |||||||||| |||||||    
T  1351094 gtactgcttgatgtaaacacattctcacataatcaatattacttcaatttcacttttcta 1351153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 12173922 - 12174000
Alignment:
Q  9 ttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 87  Q
    ||||||||||||| || | | | ||||| |||||||||||||| | |||||||||||| || |||||||| ||||||||    
T  12173922 ttacaacattattgaaaaacctattattgcgctcattccataagatccaaacgcacaatagccaaataagttgaaggaa 12174000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 10711541 - 10711464
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaag 84  Q
    ||||||||||||||| || | | |||||||| | || ||||||||| ||||||||||||| || ||||||| ||||||    
T  10711541 agttacaacattattgaaaaacctgttattatgttcgttccataaatcccaaacgcacaagagccaaataaactgaag 10711464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 25591902 - 25591825
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaag 84  Q
    ||||||||||||||| || | | |||||||||| || ||||||||||| |||||||| |  || ||||||||||||||    
T  25591902 agttacaacattattgaaaaccctgttattacgttcgttccataaaactcaaacgcatacgagccaaataagctgaag 25591825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 21335650 - 21335570
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 87  Q
    |||||| |||||||| || ||| | || || |||||||||||||| || ||||| ||||| || |||||||||||||||||    
T  21335650 agttaccacattattgaaaagcctattcttgcgctcattccataagactcaaacacacaatagccaaataagctgaaggaa 21335570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 47587034 - 47587069
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctc 42  Q
    ||||||||||||||||||||||||| ||||||||||    
T  47587034 agttacaacattattaaagagcttgctattacgctc 47587069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 7397140 - 7397087
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaac 60  Q
    |||||||||||||||||| | | | ||||||| |||||||||||| ||||||||    
T  7397140 agttacaacattattaaacaccctattattacactcattccataagacccaaac 7397087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 4076987 - 4077341
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||||||||||    
T  4076987 agttacaacatttttaaagagcctgttattacgctcattccataaaacccaaacacacaacagccaaataagctgaaggaaggtgcgagttgctttgcca 4077086  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||   |||||||||||| ||||    
T  4077087 ccacctgtcaagttcacaaactggagaaaatgatctgatagaacgttggtatccacacctaaaatacccagccaatgacgagcaagcggccataatgatg 4077186  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||||||| ||||||| |||||||||||| ||| ||||||| |||||||| | |    
T  4077187 aaaaggtatcacaagataaaaataaatgccgcgccgtttcacaaaagccacaatctgaaacacacatagaagcttcggtatcaatcatccttctttggac 4077286  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    |||||| |||||| |||||||||||||||||| ||||||||||| ||| ||||||    
T  4077287 caaattgtctttagtaggcaatctatcacgaagcaacctccaagcaaaaatagaa 4077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 29113977 - 29113623
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| || ||||||||||||||||| ||||| || |||||||||||||| ||  | | ||  ||||| ||     
T  29113977 agttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacacacaagagccaaataagctgaagaaaatctctagcagctttacct 29113878  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||    ||||| |||||||| ||||| | ||||||||| |||| |||||  || ||||| || ||||    
T  29113877 ccacctgtcaagttcacaaactgaagaaaatgatccataagaacattggtatcaacaccaagaatacccagccaattgcgcaccagaggccaaaaagatg 29113778  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| |  |||||||||| ||| ||||||||||| ||| |||  | |||||||| | ||||| ||| |||||||| || ||||| ||| | |||||   |    
T  29113777 aaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctaaaacacacaaagaagcttcggagtcaagcactcgtctttgaac 29113678  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  29113677 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 29113623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 34231411 - 34231765
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| || ||||||||||| ||||||||||| || |||||||||||||| ||  | | |   ||||| ||     
T  34231411 agttacaacattattgaaaagcctgttattacgttcgttccataaaactcaaacgcacaagagccaaataagctgaagaaaatctctaacagctttacct 34231510  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| |||||||| ||||| | ||||||||| |||| |||||  || |||||||| ||||    
T  34231511 ccacctgtcaagttcacaaactgaagaaaatgatccagaagaacattggtatcaacaccaagaatacccagccaattgcgcaccagaggccataaagatg 34231610  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| || |||||||||| ||| ||||||||||| ||| |||  | |||||||| ||||||| ||| ||||||||    ||||| ||||| |||||   |    
T  34231611 aaaaagtgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagcacccgtctttgaac 34231710  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||| ||||||||||| || |||||||| ||||| ||||    
T  34231711 caaattagctttagtaggcagtctatcacgaagcagcctccaagcaaataaagaa 34231765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 237
Target Start/End: Original strand, 28060290 - 28060519
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||| ||| || |||||  |||||||||| || ||||||||||  |||||||||||||| |||||||||| |||||| || ||||||||||| |||    
T  28060290 agttacaatattgttgaagagtctgttattacgttcgttccataaaattcaaacgcacaaaagccaaataagctaaaggaaagctcgagttgctttacca 28060389  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| ||| |||||||||||| | |||||| ||||| ||||||| ||||| | ||||||||||||||||| | ||||||||| ||  |||||||| ||||    
T  28060390 ccacctgtaaagttcacaaaccgaagaaaaagatctagtagaacattggtgt-cacacctataatacccaattaatggcgcacaaaaggccataaagatg 28060488  T
Q  207 aaaaggtatcacaagataaaaataaatgttg 237  Q
    |||| | ||| ||||||||||| ||||||||    
T  28060489 aaaaagcatcgcaagataaaaacaaatgttg 28060519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 7459099 - 7458745
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| || || ||| ||||||| || || ||||||||||| || || |||||||| |||||||||||||| ||| | ||||  ||||| |||    
T  7459099 agttacaacatttttgaaaagcctgttattgcgttcgttccataaaactcacacacacaaaagccaaataagctgaagaaagtcacgagccgctttacca 7459000  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| || ||| | |||||| || |||||||||||  | ||||| |||||||| ||||| | ||||||||| ||||||||||  |  |||||||| || |    
T  7458999 ccacctgacaaatacacaaattgaagaaaatgatcgagaagaacattggtatcaacaccaacaatacccagccaatggcgcaccataggccataaagaag 7458900  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   |||||| |||||||| ||||||||||||||| | |  | |||||||| || |||| ||||||  ||||  |||||||| |||| ||| | | |    
T  7458899 aaaaaacatcacacgataaaaacaaatgttgcgccgtttcgctcatgccacaatctgtaacacacatagccgcttcagtgtcaattacccgtctatggac 7458800  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||  ||||| |||||||||||||||||| ||||| ||||| ||||| ||||    
T  7458799 caaattcactttagtaggcaatctatcacgaagcaaccgccaagcaaataaagaa 7458745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 44784942 - 44784879
Alignment:
Q  47 cataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||||||| || ||||||||||||||||| |  ||  |||||||||||||||    
T  44784942 cataaaacccacacgcacaatagccaaataagctgaaggaatgaccgctttgctttgccaccac 44784879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 50543937 - 50544286
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||| | | ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||    
T  50543937 acaacattattgaagaacctattattacactcgttccataaaacccaaacgcacaaaagccaaataagctgaaggaaggctcgagttgctttaccaccac 50544036  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     ||||||||||||||| || |||||||||||| |||  || ||||| || ||||||||||||||||| |||||||||| |||||||||||| ||||||||    
T  50544037 ctgtcaagttcacaaattgaagaaaatgatctagtactacattggtgtcaacacctataatacccagccaatggcgcacaagcggccataaagatgaaaa 50544136  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |  ||||| | ||||||||||| | |||||    
T  50544137 ggtatcacatgataaaaataaatgttgcgccgtttcacaaaagccacaatctgaaacacacatagaagcatctgtgtctagcacccttctttggaccaaa 50544236  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctccaagtaaatataga 360  Q
    ||  ||||| |||||||||||||||||| ||||||||||| |||||||||    
T  50544237 ttcactttagtaggcaatctatcacgaagcaacctccaagcaaatataga 50544286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 19221837 - 19222184
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||||||||| ||  ||||||||||||| ||| | | ||| ||||| ||     
T  19221837 agttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagctaaataagctgaagaaagtctctagtagctttacct 19221936  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||| ||||||| ||||| || ||||||||||||||||| ||||||||||  || |||||||| ||||    
T  19221937 ccacctgtcaagttcacaaactgaagaaaatgatctagtagaacattggtgtcaacacctataatacccagccaatggcgcaccagaggccataaagatg 19222036  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||||||||| ||||| ||||||||| |||  | | |||||| ||||||| ||||||||||||  |||||||||||| |||||| | |    
T  19222037 aaaatgcatcacaagataaaaacaaatg-tgcgccgtttcactcatggcacaatctgaaacacacatagaagcttctgtgtcaatcaccattctttggac 19222135  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||| ||||| ||||||||||| ||||||  |||||||||| |||||    
T  19222136 caaattaactttagtaggcaatcta-cacgaagaaacctccaagcaaata 19222184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 7 - 159
Target Start/End: Complemental strand, 24124269 - 24124117
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24124269 agttacaacattattaaagagtctgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 24124170  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatc 159  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24124169 ccacctgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatc 24124117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 47536980 - 47537334
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||| ||||| || |||||||||||||| ||| | | ||| |||||| |     
T  47536980 agttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacacacaagagccaaataagctgaagaaagtctctagtagctttgtct 47537079  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| | |||||| ||| | ||||| |||||||| |||||||| |||||||  |||||||||| ||| ||||| || ||||    
T  47537080 ccacctgtcaagttcacaaactgaaaaaaatggtctagaagaacattggtatcaacacctatgatacccaaccaatggcgcacaagaggccaaaaagatg 47537179  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | |||| ||| || ||| ||||||||||||||| |||  | |||||||| ||||||| ||||||||||||  || |||| |||||||||||   |    
T  47537180 aaaaagcatcaaaagttagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaagcacccttctttgaac 47537279  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||| ||| ||||||||||| ||||| ||||    
T  47537280 caaattaactttagtaggcaatctatcatgaagcaacctccaagcaaataaagaa 47537334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 26845587 - 26845926
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||||  |||||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||  | |||   ||||| |||||||    
T  26845587 acaacattattgaagagtctgttattacgttcattccataaaacccatacacacaaaagccaaatcagctgaaggaaatctcgaaccgctttaccaccac 26845686  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || |||||  |||||||| ||||| |||||| | ||||| |||||||| ||||||||||||||||| |||| ||| |  |  |||||||| || |||||    
T  26845687 ctgacaagtgtacaaactgaagaaagtgatctagaagaacattggtatcaacacctataatacccagccaattgcgtaccataggccataaagaagaaaa 26845786  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
     | ||||||||||||||| ||||||||||||||| | |  | |||||||  ||||||| |||| |||||||  |  ||||||||||||||   | |||||    
T  26845787 agcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctgaatcaatcacccttctaaggaccaaa 26845886  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctccaag 350  Q
    ||||||||| |||||||||||| ||| | |||||||||||    
T  26845887 ttatctttagtaggcaatctattacgtagcaacctccaag 26845926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 33121745 - 33121396
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||| |||||| || ||| |||| ||||| || ||||||||||||||||||||||| || |||||||||||||| ||  | | |   ||||| ||     
T  33121745 agttacaatattattgaaaagcctgttgttacgttcgttccataaaacccaaacgcacaatagccaaataagctgaagaaaatctctaacagctttacct 33121646  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | || || || ||||| ||||| | ||| ||||  |||| |||||  || |||||||| ||||    
T  33121645 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagcacattagtatcaacaccaagaattcccaaccaattgcgcaccagaggccataaagatg 33121546  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    | || | ||||||||||| ||| ||||||||||| ||| |||  | |||||||| ||| ||| ||| ||||||||  |  |||| ||||| |||||   |    
T  33121545 agaatgcatcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgagacacacaaagaagcttctgaatcaagcacccgtctttgaac 33121446  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| |||||    
T  33121445 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaata 33121396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 32093345 - 32093115
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| || ||||||||||| ||||||||||| || |||||||||||||| ||| | | ||| ||||||||     
T  32093345 agttacaacattattgaaaagcctgttattacgttcgttccataaaactcaaacgcacaagagccaaataagctgaagaaagtctctagtagctttgcct 32093246  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||| ||| | ||||| |||||||| |||||||| |||||||  ||||||||||  || ||||| || | ||    
T  32093245 ccacctgtcaagttcacaaactgaagaaaatggtctagaagaacattggtatcaacacctatgatacccaaccaatggcgcaccagaggccaaaaaggtg 32093146  T
Q  207 aaaaggtatcacaagataaaaataaatgttg 237  Q
    |||| | |||||||  || ||| ||||||||    
T  32093145 aaaacgcatcacaaattagaaacaaatgttg 32093115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 11639678 - 11639847
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || | |||||||||||| || ||||||||||||||||||||||| || |||||||||||||| |||   | ||| ||||| ||     
T  11639678 agttacaacattattgaaaaccttgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaagtttctagtagctttacct 11639777  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataataccca 176  Q
    |||| |||||||||||||||| | |||||||||||| | ||||| ||||| || ||||||||||||||||    
T  11639778 ccacctgtcaagttcacaaaccgaagaaaatgatctagaagaacattggtgtcaacacctataataccca 11639847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 155 - 241
Target Start/End: Complemental strand, 24121898 - 24121812
Alignment:
Q  155 gtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaaggtatcacaagataaaaataaatgttgcgcc 241  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24121898 gtatccacacctataatacccagccaatggtgcacaagcggccataaggatgaaaaggtatcacaagataaaaataaatgttgcgcc 24121812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 25341737 - 25341540
Alignment:
Q  44 ttccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccacttgtcaagttcacaaactggagaaaatgatctg 143  Q
    ||||||||| ||||||| ||||| || |||||||||||||| ||  | | ||| | ||| || |||| |||||||||||||||| | |||||||||||      
T  25341737 ttccataaagcccaaacacacaagaggcaaataagctgaagaaaatctctagtagttttaccgccacctgtcaagttcacaaacggaagaaaatgatcga 25341638  T
Q  144 gtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaaggtatcacaagataaaaataaatgttgcgcc 241  Q
    | ||||| |||||||| |  |||||||||||||  || || ||||  || |  ||||| | |||||| | ||||||||||||||| ||||||||||||    
T  25341637 gaagaacattggtatcaatgcctataatacccaaccactgacgcaccagagatcataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgcc 25341540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 36635150 - 36635227
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaag 84  Q
    |||||||||||||||||| |||||||||||||  || || |||||||| ||||||||||| || ||||||||||||||    
T  36635150 agttacaacattattaaaaagcttgttattacattcgtttcataaaactcaaacgcacaagagccaaataagctgaag 36635227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 8 - 141
Target Start/End: Complemental strand, 49500758 - 49500625
Alignment:
Q  8 gttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccac 107  Q
    |||||||||||||| || | | | ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| |  ||  ||||| ||||||    
T  49500758 gttacaacattattgaaaaacctattattgcgctcattccataagacccaaacgcacaatagccaaataagctgaaggaatgaccgttttgctctgccac 49500659  T
Q  108 cacttgtcaagttcacaaactggagaaaatgatc 141  Q
    ||| ||| || | ||| || || |||||||||||    
T  49500658 cacctgttaaatgcacgaattgaagaaaatgatc 49500625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 8695319 - 8695099
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| || || | | || ||||||| || |||||||||||| ||||||| || || ||| |||||||||| ||| | | ||| ||||| ||     
T  8695319 agttacaacattgttgaaaaccctgctattacgttcgttccataaaaccaaaacgcataagagccaactaagctgaagaaagtctctagtagctttacct 8695220  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| | |||||||||||||||| | |||||||||    ||||  ||||| || |||||||||||| |||  ||||||||||  |  |||||||| || |    
T  8695219 ccacctatcaagttcacaaactgaataaaatgatccaaaagaatattggtgtcaacacctataatatccaaccaatggcgcaccaaaggccataaagaag 8695120  T
Q  207 aaaaggtatcacaagataaaa 227  Q
    ||||   ||||||||||||||    
T  8695119 aaaaaacatcacaagataaaa 8695099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 9047206 - 9046986
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| || || | | || ||||||| || |||||||||||| ||||||| || || ||| |||||||||| ||| | | ||| ||||| ||     
T  9047206 agttacaacattgttgaaaaccctgctattacgttcgttccataaaaccaaaacgcataagagccaactaagctgaagaaagtctctagtagctttacct 9047107  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| | |||||||||||||||| | |||||||||    ||||  ||||| || |||||||||||| |||  ||||||||||  |  |||||||| || |    
T  9047106 ccacctatcaagttcacaaactgaataaaatgatccaaaagaatattggtgtcaacacctataatatccaaccaatggcgcaccaaaggccataaagaag 9047007  T
Q  207 aaaaggtatcacaagataaaa 227  Q
    ||||   ||||||||||||||    
T  9047006 aaaaaacatcacaagataaaa 9046986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 23818314 - 23818369
Alignment:
Q  32 ttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 87  Q
    ||||| |||||||||||||| |||||||||||||| || |||||||||||||||||    
T  23818314 ttattgcgctcattccataagacccaaacgcacaatagccaaataagctgaaggaa 23818369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 38898682 - 38898761
Alignment:
Q  8 gttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 87  Q
    |||||||||||||| || | | | ||||| |||||||| ||||| |||||||| ||||| ||||||||||||||||||||    
T  38898682 gttacaacattattgaaaaacctattattgcgctcatttcataagacccaaacacacaatagtcaaataagctgaaggaa 38898761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 43122093 - 43122014
Alignment:
Q  8 gttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 87  Q
    |||||||||||||| || | | | ||||| |||||||| ||||| |||||||||||||| || |||||||||||||||||    
T  43122093 gttacaacattattgaaaaacctattattgcgctcatttcataagacccaaacgcacaatagccaaataagctgaaggaa 43122014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 46909095 - 46908987
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||||||||| ||| | || || |||||| ||||||| |||||| | || | ||| |||||||||||||||||    || ||||||||||||    
T  46909095 agttacaacattattaaacagcctattgtttcgctcagtccataacacccaagcacaaagaagccaaataagctgaaggaacaaccgcgttgctttgcca 46908996  T
Q  107 ccacttgtc 115  Q
    |||| ||||    
T  46908995 ccacctgtc 46908987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-108; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 40090051 - 40090382
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| ||||||||||||| ||||||| |||||||  ||||||||| |||||||||||||||||||| ||| |||||||||||    
T  40090051 agttacaacattattgaaaagcctgttattacgctcgttccatagaacccaacagcacaaaagccaaataagctgaaggaaggctcgaattgctttgcca 40090150  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| ||||||||||||| |  ||| ||||| || ||||||||||||||||| |||||||||| |||||||||||| ||||    
T  40090151 ccacctgtcaagttcacaaactgaagaaaatgatctgatgtaacattggtgtcaacacctataatacccagccaatggcgcacaagcggccataaagatg 40090250  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||||||||||||||||||||| || |||||||||| | ||||||||||||||||  ||||| |||||||||||| |||||||||||||||||||| | |    
T  40090251 aaaaggtatcacaagataaaaacaagtgttgcgccgattcacaaaagccacaataaaaaacacacatagaagcttcggtgtcaatcacccttctttggac 40090350  T
Q  307 caaattatctttaataggcaatctatcacgaa 338  Q
    ||||||| ||||| ||||||||||||||||||    
T  40090351 caaattaactttagtaggcaatctatcacgaa 40090382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 4922946 - 4923295
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| |||||| |||||||||| || ||||||||||||||||| |||||||| ||||| |||||||||||| | |||   ||||| |||    
T  4922946 agttacaacattattgaagagcctgttattacgttcgttccataaaacccaaacacacaaaagccaaatcagctgaaggaagtctcgaaccgctttacca 4923045  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| || |||||| |||||||| |||||||||||| | ||||| |||||||| ||||||||||||| ||  ||||||||||  || |||||||| || |    
T  4923046 ccacctgacaagttgacaaactgaagaaaatgatctagaagaacattggtatcaacacctataatacacaaccaatggcgcaccagaggccataaagaag 4923145  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
     ||| | ||||||||||||||| ||||||||||||||| |||  | |||||||| ||||||| |||| |||||||  |  ||||||||||||||   | |    
T  4923146 caaaagcatcacaagataaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatcgaagcttctgaatcaatcacccttctaaggac 4923245  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||||||||| ||| |||||||||||| | ||||||||||| |||||    
T  4923246 caaattatctttattagacaatctatcacgtagcaacctccaagcaaata 4923295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 7001193 - 7000852
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| || ||||||||||||||||||||||| || |||||||| ||||| ||| | | ||| ||||||||     
T  7001193 agttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagttgaagaaagtctctagtagctttgcct 7001094  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||| ||| | ||||| |||||||| |||||||| ||||| || ||||| ||||  || |||||||| | ||    
T  7001093 ccacctgtcaagttcacaaactgaagaaaatggtctagaagaacattggtatcaacacctatgatacctagccaatgacgcaccagaggccataaaggtg 7000994  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||||||||||||| || ||| ||||||||  ||||| |||  | |||||||| ||||||| ||| ||||||||  | ||||| |||||||||||   |    
T  7000993 aaaaggtatcacaagttagaaacaaatgttgtaccgtttcactcatgccacaatctgaaacacacagagaagcttctgagtcaagcacccttctttgaac 7000894  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctcca 348  Q
    ||||||| | ||| |||||||||||||||||| |||||||||    
T  7000893 caaattaaccttagtaggcaatctatcacgaagcaacctcca 7000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 41 - 350
Target Start/End: Original strand, 6048969 - 6049278
Alignment:
Q  41 tcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccacttgtcaagttcacaaactggagaaaatgat 140  Q
    |||||||||||||||||||| ||||| || |||||||||||||| ||  | | ||| | ||| || ||||||||||||||||||||||| ||||||||||    
T  6048969 tcattccataaaacccaaacacacaagagccaaataagctgaagaaaatctctagtagttttaccgccacttgtcaagttcacaaactgaagaaaatgat 6049068  T
Q  141 ctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaaggtatcacaagataaaaataaatgttgcgc 240  Q
    |  | ||||| |||||||| || |||||||||||||  || || ||||  || | |||||| | |||||| | ||||||||||||||| |||||||| ||    
T  6049069 cgagaagaacattggtatcgacgcctataatacccaaccattgacgcaccagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgtgc 6049168  T
Q  241 cgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaattatctttaataggcaatctatcacgaacc 340  Q
    |||| |||  | |||||||| ||||||| ||| ||||||||  ||||| ||||||||||||  | |||||||||||||| ||||||| |||||||||| |    
T  6049169 cgtttcactcatgccacaatctgaaacacacaaagaagcttctgtgtcgatcacccttcttcggaccaaattatctttagtaggcaacctatcacgaagc 6049268  T
Q  341 aacctccaag 350  Q
    ||||||||||    
T  6049269 aacctccaag 6049278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 20209143 - 20208798
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||||  |||||||| | |||||||||||||||||||| |||||||| ||||| |||||||  ||  | |||   ||||| |||||||    
T  20209143 acaacattattgaagagtctgttattaggttcattccataaaacccaaacacacaaaagccaaatcagctgaacaaaatctcgaaccgctttaccaccac 20209044  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || ||||| ||||||||| ||||| |||||| | ||||| |||||||| ||||||||||||||||| |||| |||||  |  |||||||| || |||||    
T  20209043 ctgacaagtgcacaaactgaagaaagtgatctagaagaacattggtatcaacacctataatacccagccaattgcgcaccataggccataaagaagaaaa 20208944  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
     | ||||||||||||||||||||||||||||||| | |  | |||||||| ||||||| |||  |||||||  |  ||||||||||||||   | |||||    
T  20208943 agcatcacaagataaaaataaatgttgcgccgtttctctcatgccacaatctgaaacacacaacgaagcttctgaatcaatcacccttctaaggaccaaa 20208844  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||||| |||||||||||| ||| | ||||||||||| |||||    
T  20208843 ttatctttagtaggcaatctattacgtagcaacctccaagcaaata 20208798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 4416128 - 4415774
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| ||||||||||  | ||||||||||||||||||||||| || |||||||| ||||| ||  | | | | ||||| ||     
T  4416128 agttacaacattattgaaaagcctgttattacgtacgttccataaaacccaaacgcacaagagccaaataagttgaagaaaatctctaatagctttacct 4416029  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| |||||||| ||||| | ||||||||| ||||||||||  || | ||| || ||||    
T  4416028 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattggtatcaacaccaagaatacccagccaatggcgcaccagagaccaaaaagatg 4415929  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| |  |||||||||| ||| ||||||||||  ||| ||| || |||||||| ||||||| ||| ||||||||  | ||||| ||||| |||||        
T  4415928 aaaaagcgtcacaagatagaaacaaatgttgcgttgtttcactaatgccacaatctgaaacacacagagaagcttctgagtcaagcacccgtctttgaat 4415829  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  4415828 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 4415774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 34874867 - 34874559
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||| | | ||| ||||||||     
T  34874867 agttacaacattattgaaaggcttgttattacgttcattccataaaacccaaacgcacaagagccaaataagctgaagaaagtctctagtagctttgcct 34874768  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||  |||||||||||||||| | |||||||| ||| ||||||| ||  |||| |||||||| |||||| | ||||||||||  || |||||||| ||||    
T  34874767 ccatctgtcaagttcacaaaccgaagaaaatggtctagtagaacattaatatcaacacctatgatacccggccaatggcgcaccagaggccataaagatg 34874668  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | |||||||| |    | ||||||||||||||| |||  |||| ||||| | ||||| ||||||||||||| || |||| || ||||||||   |    
T  34874667 aaaatgcatcacaagtt----agaaatgttgcgccgtttcactcaagcgacaatctaaaacacacatagaagcttttgtatcaagcatccttctttgaac 34874572  T
Q  307 caaattatcttta 319  Q
    ||||||| |||||    
T  34874571 caaattaacttta 34874559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 20591874 - 20591952
Alignment:
Q  32 ttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||| |  ||  |||||||||||||||    
T  20591874 ttattgcgctcattccataagacccacacgcacaatagccaaataagctgaaggaatgaccgttttgctttgccaccac 20591952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 20395308 - 20395662
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| | |||||||| || ||||||||||||||||||||||| || |||||||||||||| ||| | | ||| ||||||||     
T  20395308 agttacaacattattgaaaagcctattattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaagtctctagtagctttgcct 20395407  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| | |||||| ||| | ||||| |||||||| |||||||| |||||||  |||||||||| ||| ||||| || ||||    
T  20395408 ccacctgtcaagttcacaaactgaaaaaaatggtctagaagaacattggtatcaacacctatgatacccaaccaatggcgcacaagaggccaaaaagatg 20395507  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | |||| ||| || ||| ||||||||||||||| |||  | |||||||| ||||||| ||||||||||||  || |||| |||||||||||   |    
T  20395508 aaaaagcatcaaaagttagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaagcacccttctttgaac 20395607  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||| ||| ||||||||||| ||||| ||||    
T  20395608 caaattaactttagtaggcaatctatcatgaagcaacctccaagcaaataaagaa 20395662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 53487377 - 53487027
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| || ||| |||||||||| |||||||||||||||||||||||||| || ||||||||||| || ||| | | ||| ||||| || || |    
T  53487377 acaacattattgaaaagcctgttattacgttcattccataaaacccaaacgcacaagagccaaataagctggagaaagtctctagtagctttacctcctc 53487278  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     |||||||||||||||||| |||||||||||| ||||||| || || || ||||| | ||||||||| ||||| ||||  || |||||||| | ||||||    
T  53487277 ctgtcaagttcacaaactgaagaaaatgatctagtagaacattagtgtcaacaccaagaatacccagccaatgtcgcaccagaggccataaaggtgaaaa 53487178  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
     | ||||||||||| ||| ||||||||||||||| |||| | ||||||||  |||||| ||| ||||||||  | ||||| ||||| |||||   |||||    
T  53487177 agcatcacaagatagaaacaaatgttgcgccgtttcacacatgccacaatcagaaacacacaaagaagcttctgagtcaagcacccgtctttcaaccaaa 53487078  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||| ||||| ||||||||||||| |||| ||||||||||| ||||| ||||    
T  53487077 ttagctttagtaggcaatctatctcgaagcaacctccaagcaaataaagaa 53487027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 7 - 156
Target Start/End: Original strand, 18935380 - 18935529
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  18935380 agttacaacattattaaagagtctgttattacgctcattccataaaacccaaatgcacaaaagccaaataagctgaaggaaggcgcgagttgctttgcca 18935479  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggt 156  Q
    |||| || |||||||||||||||||||||||||| |||||||||||||||    
T  18935480 ccacctgacaagttcacaaactggagaaaatgatttggtagaacgttggt 18935529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 34322747 - 34322393
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||  | | | | ||||| ||     
T  34322747 agttacaacattattgaaaagtctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaagaaaatctctaatagctttacct 34322648  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| |||||||| ||||| | ||||||||| ||||||||||  || | ||| || ||||    
T  34322647 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattggtatcaacaccaagaatacccagccaatggcgcaccagagaccaaaaagatg 34322548  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| |  |||||||||| ||| ||||||||||| ||| |||  | |||||||| ||||||| ||| ||||||||  | | ||| ||||| |||||   |    
T  34322547 aaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacagagaagcttctgagacaagcacccgtctttgaac 34322448  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  34322447 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 34322393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 7 - 356
Target Start/End: Original strand, 53779757 - 53780106
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| || || ||| ||||||| || || ||||||||||||||||| |||||||| |||||||||||||| ||| | ||||  ||||| |||    
T  53779757 agttacaacatttttgaaaagcctgttattgcgttcgttccataaaacccaaacacacaaaagccaaataagctgaagaaagtcacgagccgctttacca 53779856  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| || ||| ||||||||||| |||||||||||  | ||||| |||||||| |||||||  |||||||| ||||||||||  || |||||||| || |    
T  53779857 ccacctgacaaattcacaaactgaagaaaatgatcgagaagaacattggtatcaacacctacgatacccagccaatggcgcaccagaggccataaagaag 53779956  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   |||||| |||||||| ||||||||||||||| |||  | ||||||||  | |||| |||||| |||||  |||||||| |||| ||| | | |    
T  53779957 aaaaaacatcacatgataaaaacaaatgttgcgccgtttcactcatgccacaatccgtaacacacatagcagcttctgtgtcaattacccgtctatggac 53780056  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||| ||||  |||||||||||||||||| ||||| ||||| |||||    
T  53780057 caaattaacttttgtaggcaatctatcacgaagcaaccgccaagcaaata 53780106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 30274240 - 30273886
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || | | |||||||||| || ||||||||||||||||||||||| || |||||||||||||  ||  | | | | ||||| ||     
T  30274240 agttacaacattattgaaaaacctgttattacgttcgttccataaaacccaaacgcacaagagccaaataagctgaaaaaaatctctaatagctttacct 30274141  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| ||| |||| ||||| | ||||||||| |||| | |||  || |||||||| ||||    
T  30274140 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattgatatcaacaccaagaatacccagccaatagtgcaccagaggccataaagatg 30274041  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| |  |||||||||| ||| ||||||||||| ||| |||  | |||||||| ||||||| ||| ||||||||    ||||| ||||| |||||   |    
T  30274040 aaaaagcgtcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctaagtcaagcacccgtctttgaac 30273941  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||| ||||| ||||    
T  30273940 caaattagctttaatagacaatctatcacgaagcaacctccaagcaaataaagaa 30273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 42777950 - 42778304
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| | |||||||| || |||| ||  | ||||||||||||||| |||||||||||||| ||| | | ||| ||||| ||     
T  42777950 agttacaacattattgaaaagcctattattacgttcgttccgtaccatccaaacgcacaaaagccaaataagctgaagaaagtctctagtagctttccct 42778049  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||| ||||||||||| |||||||||||  | ||||| ||||| || || |||| ||| || || ||||||||||  || |||||||| ||||    
T  42778050 ccacctgtcaaattcacaaactgaagaaaatgatcaagaagaacattggtgtcaacccctagaattcctagccaatggcgcaccagaggccataacgatg 42778149  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||||| ||| ||||||||||| ||| |||  | |||||||| ||||||| |||  |||||||  | ||||| ||||| |||||   |    
T  42778150 aaaaagcatcacaagatagaaacaaatgttgcgctgtttcactcatgccacaatctgaaacacacaatgaagcttctgagtcaagcacccgtctttgaac 42778249  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| ||||||||||||||||||  | |||||||| ||||| ||||    
T  42778250 caaattagctttagtaggcaatctatcacgaagtagcctccaagcaaataaagaa 42778304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 18106984 - 18106630
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||| ||||| || ||||||||||| ||||||||||| || |||||||||||||| ||  | | |    |||| ||     
T  18106984 agttacaacattattgaaaagtctgttgttacgttcgttccataaaactcaaacgcacaatagccaaataagctgaagaaaatctctaacaactttacct 18106885  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| || ||||| ||||| | ||| ||||| |||| |||||  || |||||||| ||||    
T  18106884 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattagtatcaacaccaagaattcccagccaattgcgcatcagaggccataaagatg 18106785  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||||| ||| ||| ||||||| ||| |||  | |||||||| ||||||| ||| ||||||||  |  |||| ||||| |||||   |    
T  18106784 aaaacgcatcacaagatagaaacaaacgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctgaatcaagcacccgtctttgaac 18106685  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  18106684 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 18106630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 29213409 - 29213060
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| || || || |||||||| || || ||||||||||||||||| |||||||| |||||||| ||||| ||| | ||||  ||||| |||    
T  29213409 agttacaacatttttgaaaagtttgttattgcgttcgttccataaaacccaaacacacaaaagccaaataagttgaagaaagtcacgagccgctttacca 29213310  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| || ||  ||||||||||| ||||||||||   | ||||| |||||||| ||||||| ||||||||| ||||||||||  || |||||||| || |    
T  29213309 ccacctgacagattcacaaactgaagaaaatgatagagaagaacattggtatcaacacctacaatacccagccaatggcgcaccagaggccataaagaag 29213210  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   ||||||  ||||||| ||||||||||||||| |||  | |||| |||  | |||| |||||| |||||  |||||||| || | ||| | | |    
T  29213209 aaaaaacatcacacaataaaaacaaatgttgcgccgtttcactcatgccagaatccgtaacacacatagcagcttctgtgtcaattactcgtctatggac 29213110  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||| ||||  |||||||||||||||||| ||||| ||||| |||||    
T  29213109 caaattaacttttgtaggcaatctatcacgaagcaaccgccaagcaaata 29213060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 7 - 356
Target Start/End: Complemental strand, 10563737 - 10563388
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||| || || ||| ||||||| || || ||||||||||||||||| |||||||| |||||||||||||| ||| | ||||  ||||| |||    
T  10563737 agttacaacatttttgaaaagcctgttattgcgttcgttccataaaacccaaacacacaaaagccaaataagctgaagaaagtcacgagccgctttacca 10563638  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| || ||| | |||||| || ||||||| | |  | ||||| |||||||| ||||||| ||||||||| ||||||||||  || |||||||| || |    
T  10563637 ccacctgacaaatacacaaattgaagaaaattaccgagaagaacattggtatcaacacctacaatacccagccaatggcgcaccagaggccataaagaag 10563538  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   |||||| |||||||| ||||| | || |||| |||  | ||||||||  | |||| ||||||  ||||  |||||||| |||| ||| | | |    
T  10563537 aaaaaacatcacacgataaaaacaaatgctacgtcgtttcactcatgccacaatccgtaacacacatagccgcttcagtgtcaattacccgtctatggac 10563438  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||| || |  |||||||||||||||||| ||||| ||||| |||||    
T  10563437 caaattaactattgtaggcaatctatcacgaagcaaccgccaagcaaata 10563388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 42823156 - 42823374
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||| |||||| || |||||||||||||| || ||||||||||| ||||||||||| || ||||| |||||||| ||    | | | ||||| ||     
T  42823156 agttacaa-attattgaaaagcttgttattacgttcgttccataaaactcaaacgcacaagagccaaatgagctgaagaaaatttctaatagctttacct 42823254  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| |||||||| ||||| | ||||||||  ||||||||||  || |||||||| ||||    
T  42823255 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattggtatcaacaccaaaaatacccaaccaatggcgcaccagaggccataaagatg 42823354  T
Q  207 aaaaggtatcacaagataaa 226  Q
    |||| |  ||||||||||||    
T  42823355 aaaaagcgtcacaagataaa 42823374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 449763 - 449996
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||| | || |||||||| ||| |||||||||| || |||||||| ||||| ||  | | | | ||||| ||     
T  449763 agttacaacattattgaaaagcctgttattatgttcgttccataatacctaaacgcacaagagccaaataagttgaagaaaatctctaatagctttacct 449862  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| |||||||| ||||| | ||||||||| |||| |||||  |  |||||||| || |    
T  449863 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattggtatcaacaccaagaatacccagccaattgcgcaccataggccataaagaag 449962  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgc 240  Q
    |||| |  |||||||||| ||| |||||||||||    
T  449963 aaaaagcgtcacaagatagaaacaaatgttgcgc 449996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 31863978 - 31864143
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || | | |||||||||| || || ||||||||||||||||| |  || |||||||||||||| ||| | | ||| ||||| ||     
T  31863978 agttacaacattattgaaaaccctgttattacgttcgtttcataaaacccaaacgcatacgagccaaataagctgaagaaagtctctagtagctttacct 31864077  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataata 172  Q
    |||| |||||||||||||||||| | |||||||||  | ||||| ||||| || ||||||||||||    
T  31864078 ccacctgtcaagttcacaaactgaataaaatgatccagaagaacattggtgtcaacacctataata 31864143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 7 - 83
Target Start/End: Complemental strand, 12881113 - 12881037
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaa 83  Q
    ||||||||||||||| || ||| |||||||||| || |||||||||||||||||| |||| || |||||||||||||    
T  12881113 agttacaacattattgaaaagcctgttattacgttcgttccataaaacccaaacgaacaagagccaaataagctgaa 12881037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 6e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 17658543 - 17658897
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||| |||| || ||| |||||||||| || ||||||||||||||||||||||| || |||||||||||||| ||| | | ||| ||||||||     
T  17658543 agttacaacaatattgaaaagcctgttattacgttcgttccataaaacccaaacgcacaatagccaaataagctgaagaaagtctctagtagctttgcct 17658642  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||| ||| | ||||| |||||||| |||||| | |||||||| |||||| |||  || |||||||| ||||    
T  17658643 ccacctgtcaagttcacaaactgaagaaaatggtctagaagaacattggtatcaacacctgtgatacccagccaatggtgcaccagaggccataaagatg 17658742  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | |||||||| ||  || ||||||||||||||| |||  | |||||||| ||||||| |||| |||||||| || |||| |||||||||||   |    
T  17658743 aaaacgcatcacaagttaggaacaaatgttgcgccgtttcacttatgccacaatctgaaacacacatggaagcttttgtatcaagcacccttctttgaac 17658842  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| ||||||||||||| |||| ||||||||| | ||||| ||||    
T  17658843 caaattaactttagtaggcaatctatctcgaagcaacctccacgcaaataaagaa 17658897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 23679875 - 23680228
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || || ||||||||||| || || |||||||| ||||||||||| || |||| ||||| ||| ||| | | ||| ||||||||     
T  23679875 agttacaacattattgaaaagtttgttattacgttcgtttcataaaactcaaacgcacaagag-caaaaaagctaaagaaagtctctagtagctttgcct 23679973  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||  || || |||||||| ||| | ||||| |||||||| |||||||| |||||||| ||||||||||  || |||||||| ||||    
T  23679974 ccacctgtcaagttcaataattgaagaaaatggtctagaagaacattggtatcaacacctatgatacccagccaatggcgcaccagaggccataaagatg 23680073  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | |||||||| |||||| ||||||||||||||| |||  | |||||||| ||||||| ||||||||||||  || |||| |||||||||||   |    
T  23680074 aaaaagcatcacaagttaaaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatagaagcttctgtatcaagcacccttctttgaac 23680173  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| ||||||| |||||||||| ||||||||| | ||||| ||||    
T  23680174 caaattaactttagtaggcaaactatcacgaagcaacctccacgcaaataaagaa 23680228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 26031208 - 26031553
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    |||||||||||||||||  |||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||  | |||   ||||| |||||||    
T  26031208 acaacattattaaagagtctgttattacgttcattccataaaactcaaacacacaaaagtcaaatcagctgaaggaaatctcgaaccgctttaccaccac 26031307  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || ||||| ||||||||| ||||| |||||| | ||||  |||||||||||||||||||||||||| |||| |||||  |  |||||||| || |||||    
T  26031308 ctgacaagtgcacaaactgaagaaagtgatctagaagaatattggtatccacacctataatacccagccaattgcgcaccataggccataaagaagaaaa 26031407  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
       |||||| |||||||| ||||||||||||||| | |  | ||||||||  |||||| |||| |||||||  |  ||||||||| ||||   |||||||    
T  26031408 aacatcacaggataaaaacaaatgttgcgccgtttctctcatgccacaatcagaaacacacatcgaagcttctgaatcaatcacctttctaagggccaaa 26031507  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||||| |||||||||||| ||| | |||||||||| ||||||    
T  26031508 ttatctttagtaggcaatctattacggagcaacctccaaataaata 26031553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 44 - 350
Target Start/End: Complemental strand, 45256219 - 45255913
Alignment:
Q  44 ttccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccacttgtcaagttcacaaactggagaaaatgatctg 143  Q
    ||||||||||||||||| ||||| || |||||||||||||  ||  | | ||| | ||| || |||| |||||||||||||||||| |||||||||||      
T  45256219 ttccataaaacccaaacacacaagagccaaataagctgaaaaaaatctctagtagttttaccgccacctgtcaagttcacaaactgaagaaaatgatcga 45256120  T
Q  144 gtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaaggtatcacaagataaaaataaatgttgcgccgt 243  Q
    | ||||| |||||||| || |||||||||||||  || || ||||  || | |||||| | |||||| | ||||||||||||||| ||||||||||||||    
T  45256119 gaagaacattggtatcaacgcctataatacccaaccactgacgcaccagagaccataaaggtgaaaatgcatcacaagataaaaacaaatgttgcgccgt 45256020  T
Q  244 tccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaattatctttaataggcaatctatcacgaaccaac 343  Q
    | |||  | |||||||| ||||||| ||| ||||||||  | ||| ||||||||||||  | |||||||||||||| |||||||||||||||||| ||||    
T  45256019 ttcactcatgccacaatctgaaacacacaaagaagcttctgagtcgatcacccttcttcggaccaaattatctttagtaggcaatctatcacgaagcaac 45255920  T
Q  344 ctccaag 350  Q
    |||||||    
T  45255919 ctccaag 45255913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 11155230 - 11155333
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| | ||||| |||||||||||||| ||||| |||||||| || |||||||| |||||||| |  ||  |||||||||||    
T  11155230 agttacaacattattgaaaagcctattattgcgctcattccataagacccacacgcacaatagccaaataagttgaaggaatgatcgctttgctttgcca 11155329  T
Q  107 ccac 110  Q
    ||||    
T  11155330 ccac 11155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 36156871 - 36156949
Alignment:
Q  9 ttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaa 87  Q
    ||||||||||||| || ||| | ||||| |||||||| ||||| ||||| |||||||| || |||||||| ||||||||    
T  36156871 ttacaacattattgaaaagcctattattgcgctcattgcataagacccacacgcacaatagccaaataagttgaaggaa 36156949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 6e-70; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 17079619 - 17079265
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| ||||||||||||||| |||||||||| || |||||||||||| | ||| | | ||| ||||| ||     
T  17079619 agttacaacattattgaaaagcctgttattacgttcattccataaaacctaaacgcacaagagccaaataagctgaggaaagtctctagtagctttacct 17079520  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| ||||| |||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||||  ||||||||||  || |||||||| ||||    
T  17079519 ccacctgtcaggttcacaaactgaagaaaatgatctagtagaacattggtatcaacacctataatacccaaccaatggcgcaccagaggccataaagatg 17079420  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   ||||||||||| ||| |||||| |||||| | |||  | |||||||  ||||||||||||||||||||  ||| ||| ||||| |||||   |    
T  17079419 aaaaaacatcacaagatagaaacaaatgtcgcgccgattcactcatgccacaacctgaaacatacatagaagcttctgtgacaagcacccgtctttgaac 17079320  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| | |||||||||||||||| |||||| |||| ||||| ||||    
T  17079319 caaattaactttagtgggcaatctatcacgaagcaaccttcaagaaaatagagaa 17079265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 11061284 - 11060933
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| || |||||||||| |||||||||||| || |||||||||||||| ||| | | ||| ||||||||     
T  11061284 agttacaacattattgaaaagcctgttattacgttcgttccataaaatccaaacgcacaatagccaaataagctgaagaaagtctctagtagctttgcct 11061185  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||| | ||||| |||||||| |||||| | |||||||| |   | ||||  || |||||||| ||||    
T  11061184 ccacctgtcaagttcacaaactgaagaaaatgatctagaagaacattggtatcaacacctgtgatacccagcc---gacgcacgagaggccataaagatg 11061088  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||  |  || ||||||||||||||| |||  | |||||||| ||||||| |||| |||||||  || |||| |||||||||||   |    
T  11061087 aaaaagcatcacaagtcaggaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacatggaagcttctgtatcaagcacccttctttgaac 11060988  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| ||||||||||||| ||||  |||||||| | ||||| ||||    
T  11060987 caaattaactttagtaggcaatctatcccgaaggaacctccatgcaaataaagaa 11060933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 9199680 - 9199326
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||| ||||||||| || ||| |||||||||| || ||||||||||  ||||||||| |||| ||||||| |||||| ||| | | ||| ||||| ||     
T  9199680 agttaaaacattattgaaaagcctgttattacgttcgttccataaaattcaaacgcacgaaagccaaataaactgaagaaagtctctagtagctttccct 9199581  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||| ||||||||||| |||||||||||| ||||||| ||||| || ||||||| ||| ||||| ||||||||||  || |||||||| ||||    
T  9199580 ccacctgtcaaattcacaaactgaagaaaatgatctagtagaacattggtgtcaacacctagaattcccagccaatggcgcatcagaggccataacgatg 9199481  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||||| ||| |||||||||||| || |||  | |||||||| ||||||| |||  |||||||  | ||||| ||||| ||||    |    
T  9199480 aaaaagcatcacaagatagaaacaaatgttgcgccatttcactcatgccacaatctgaaacacacaatgaagcttctgagtcaagcacccgtcttcgaac 9199381  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||| | ||||| ||||||||| |||||||| ||||||||||| ||||| ||||    
T  9199380 caaatcagctttagtaggcaatccatcacgaagcaacctccaagcaaataaagaa 9199326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17874225 - 17874026
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    |||||||| || || ||| ||||||| || || |||||||||| |||||| |||||||| |||||||||||||| ||| |  |||  ||||| |||||||    
T  17874225 acaacatttttgaacagcctgttattgcgttcgttccataaaatccaaacacacaaaagccaaataagctgaagaaagtcatgagccgctttaccaccac 17874126  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || ||| ||||||||||| |||||||||||  | ||||| |||||||| |||||   ||||||||| ||||||||||  || |||||||| || |||||    
T  17874125 ctgacaaattcacaaactgaagaaaatgatcgagaagaacattggtatcaacaccggcaatacccagccaatggcgcaccagaggccataaagaagaaaa 17874026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 15311315 - 15311418
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||| |||||||||| ||| | ||||||| ||||||||||||||| ||| | || | ||| ||||||||||||||||| |  || ||||||||||||    
T  15311315 agttacaccattattaaacagcctattattacactcattccataaaactcaagcacagagaagccaaataagctgaaggaacgaccgcgttgctttgcca 15311414  T
Q  107 ccac 110  Q
    ||||    
T  15311415 ccac 15311418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 15316609 - 15316712
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||| |||||||||| ||| | ||||||| ||||||||||||||| ||| | || | ||| ||||||||||||||||| |  || ||||||||||||    
T  15316609 agttacaccattattaaacagcctattattacactcattccataaaactcaagcacagagaagccaaataagctgaaggaacgaccgcgttgctttgcca 15316708  T
Q  107 ccac 110  Q
    ||||    
T  15316709 ccac 15316712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 19232605 - 19232786
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    |||||||||||||||||| | ||| ||||||| |||||||||||| ||||| || || |  || ||||| ||||||| ||| |  |   |||||||||||    
T  19232605 agttacaacattattaaacaccttattattacactcattccataagacccatacacaaaggagccaaatgagctgaaagaatgacctctttgctttgcca 19232704  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgca 188  Q
    |||| |||  | | ||||||||||||||||| ||| |  | ||| ||||| || ||||| |||| ||| |||||||| ||||    
T  19232705 ccacctgttgaatacacaaactggagaaaattatcggacaaaacattggtgtcgacacccataaaaccaagtcaatgtcgca 19232786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 5e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 1379794 - 1380148
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || | | | |||||| | || |||||||  ||||||||||||||||| |||||||||||||| ||| | | ||| ||||| ||     
T  1379794 agttacaacattattgaaaaacctattattatgttcgttccataccacccaaacgcacaaaagccaaataagctgaagaaagtctctagtagctttccct 1379893  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||| ||||||||||| |||||||||||| ||||||| ||||| || || |||| ||| ||||| ||||||||||  || |||||||| ||||    
T  1379894 ccacctgtcaaattcacaaactgaagaaaatgatctagtagaacattggtgtcaacccctagaattcccagccaatggcgcaccagaggccataacgatg 1379993  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||||| ||| ||||||||||||||| |||  | |||||||| ||||||| |||  |||||||  | ||||| ||||| |||||   |    
T  1379994 aaaaagcatcacaagatagaaacaaatgttgcgccgtttcactcatgccacaatctgaaacacacaatgaagcttctgagtcaagcacccgtctttgaac 1380093  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| ||||||||||||||||||  | |||||||| ||||| ||||    
T  1380094 caaattagctttagtaggcaatctatcacgaagtagcctccaagcaaataaagaa 1380148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 7 - 361
Target Start/End: Complemental strand, 3000176 - 2999822
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||  |||| ||||| || ||||||||||| ||||||||||| || |||||||||||||| ||  | | |    |||| ||     
T  3000176 agttacaacattattgaaaagtctgttgttacgttcgttccataaaactcaaacgcacaatagccaaataagctgaagaaaatctctaacaactttacct 3000077  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| |||||||||||  | ||||| || ||||| ||||| | ||| ||||| |||| |||||  || |||||||| ||||    
T  3000076 ccacctgtcaagttcacaaactgaagaaaatgatcaagaagaacattagtatcaacaccaagaattcccagccaattgcgcatcagaggccataaagatg 2999977  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    |||| | ||||||||||| ||| ||| ||||||| ||| |||  | |||||||| ||||||| ||| ||||||||  |  |||| ||||| |||||   |    
T  2999976 aaaacgcatcacaagatagaaacaaacgttgcgctgtttcactcatgccacaatctgaaacacacaaagaagcttctgaatcaagcacccgtctttgaac 2999877  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||| ||||| ||||    
T  2999876 caaattagctttagtaggcaatctatcacgaagcaacctccaagcaaataaagaa 2999822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 7 - 176
Target Start/End: Original strand, 7075824 - 7075993
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || |||||||||||||| |  |||||||||| |||||||||||| || |||||||||||||| ||  | | | | ||||| ||     
T  7075824 agttacaacattattgaaaagcttgttattacgtttgttccataaaatccaaacgcacaagagccaaataagctgaagaaaatctctaatagctttacct 7075923  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataataccca 176  Q
    |||| |||||||||||||||||| | |||||||||  | ||||| ||| |||| ||||| | ||||||||    
T  7075924 ccacctgtcaagttcacaaactgaaaaaaatgatcaagaagaacattgatatcaacaccaagaataccca 7075993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 11026812 - 11026889
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaag 84  Q
    ||||||||||||||| || ||| | |||||  | ||||||||||| ||||| ||| |||| || ||||||||||||||    
T  11026812 agttacaacattattgaaaagcctattattgtgatcattccataagacccacacgaacaatagccaaataagctgaag 11026889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 11 - 356
Target Start/End: Original strand, 7244 - 7589
Alignment:
Q  11 acaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgccaccac 110  Q
    ||||||||||| |||||  |||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||  | ||| | ||||| |||||||    
T  7244 acaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagccaaatcagctgaaggaaatctcgaatcgctttaccaccac 7343  T
Q  111 ttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatgaaaa 210  Q
     || ||||| ||||||||| ||||| |||||| | ||||| |||||||| ||||||||||||||| | |||| |||||  |  ||||||||  | |||||    
T  7344 ctgacaagtgcacaaactgaagaaagtgatctagaagaacattggtatcaacacctataataccctgccaattgcgcaccataggccataaataagaaaa 7443  T
Q  211 ggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggccaaa 310  Q
     | ||||||||||||||| ||||||||||||||| | |  | |||||||  ||||||| |||| |||||||     ||||||||||||||   | |||||    
T  7444 agcatcacaagataaaaacaaatgttgcgccgtttctctcatgccacaaactgaaacacacatcgaagcttctaaatcaatcacccttctaaggaccaaa 7543  T
Q  311 ttatctttaataggcaatctatcacgaaccaacctccaagtaaata 356  Q
    ||||||||| |||||||||||| ||| | ||||||||||| |||||    
T  7544 ttatctttagtaggcaatctattacgtagcaacctccaagcaaata 7589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 7 - 361
Target Start/End: Original strand, 181841 - 182195
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || | | |||||||||| || |||||||||||||||||||| |  || |||||||||||||| ||| | | |||  |||| ||     
T  181841 agttacaacattattgaaaaccctgttattacgttcgttccataaaacccaaacgcatacgagccaaataagctgaagaaagtctctagtcactttacct 181940  T
Q  107 ccacttgtcaagttcacaaactggagaaaatgatctggtagaacgttggtatccacacctataatacccagtcaatggcgcaaaagcggccataaggatg 206  Q
    |||| |||||||||||||||||| | |||||||||  | ||||| ||||| || ||||||||||||||||  |||||||| |  |  |||||||| || |    
T  181941 ccacctgtcaagttcacaaactgaataaaatgatccagaagaacattggtgtcaacacctataatacccaaccaatggcgtaccaaaggccataaagaag 182040  T
Q  207 aaaaggtatcacaagataaaaataaatgttgcgccgttccacaaaagccacaatatgaaacatacatagaagctttggtgtcaatcacccttcttttggc 306  Q
    ||||   ||||||||| | ||| ||||||||||| ||| ||   | |||||||| || |||| ||||||||||||   |||||| ||||| |||||   |    
T  182041 aaaaaacatcacaagaaagaaacaaatgttgcgctgtttcattcatgccacaatctgtaacacacatagaagcttcaatgtcaagcacccgtctttgaac 182140  T
Q  307 caaattatctttaataggcaatctatcacgaaccaacctccaagtaaatatagaa 361  Q
    ||||||| ||||| | |||| ||||||||||| ||||||||||| ||||| ||||    
T  182141 caaattaactttagtgggcagtctatcacgaagcaacctccaagcaaataaagaa 182195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 11790 - 11922
Alignment:
Q  7 agttacaacattattaaagagcttgttattacgctcattccataaaacccaaacgcacaaaagtcaaataagctgaaggaaggcgcgagttgctttgcca 106  Q
    ||||||||||||||| || ||| |||||||||| || ||||||||||||||||||||||| ||  ||||||||||||  ||| | | ||| ||||||||     
T  11790 agttacaacattattgaaaagcatgttattacgttcgttccataaaacccaaacgcacaagagctaaataagctgaacaaagtctctagtagctttgcct 11889  T
Q  107 ccacttgtcaagttcacaaactggagaaaatga 139  Q
    |||| |||||| ||||||||||| |||||||||    
T  11890 ccacctgtcaaattcacaaactgaagaaaatga 11922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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