View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-8 (Length: 768)
Name: NF2085-Insertion-8
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-8 |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 8 - 582
Target Start/End: Complemental strand, 54429060 - 54428483
Alignment:
| Q |
8 |
ggcggcatttaggaatatatatatttatcacattgcttttagtaccttgcttcttttgaattccaattacatgactgttcatccctaacttacacttggc |
107 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
54429060 |
ggcggcatttaggaatatat----ttatcacattgcttttagtaacttgcttcttttgaattccaattatatgactgttcatccctaacttacacttggc |
54428965 |
T |
|
| Q |
108 |
ttctatattttatctatctatataatataactgcatttttaagcttacctctcattaaggcttccacagtgtgtataaatattgcaaatgatggannnnn |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54428964 |
ttctatattttatctatctatataatataactgcatttttaagcttacctctcattaaggtttccacagtgtgtataaatattgcaaatgatggattttt |
54428865 |
T |
|
| Q |
208 |
nncttgactcaatctttatatccatgactgtcaaactcgatagcatacataaactcgtggaattttcatagacttcactctagagttgaaagagtttact |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54428864 |
ttcttgactcaatctttatatccatgactgtcaaactcgatagcatacataaactcgtggaattttcatagacttcactctagagttgaaagagtttact |
54428765 |
T |
|
| Q |
308 |
tagtacaaaaataactttttatacatccatcattacaatatcnnnnnnngagggaatcattacaatatctaaacacaacttaataccatattgttatgag |
407 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54428764 |
tagtacaaaaataacttcttatacatccatcattacaatatctttttttgagggaatcattacaatatctaaacacaacttaataccatattgttatgag |
54428665 |
T |
|
| Q |
408 |
tgtgga-----------ataaaagtggtgcaaatgatgatgacatggcaaataagaaggggttgagacgtagcaaccgtatccaaagggaatcatccaat |
496 |
Q |
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| T |
54428664 |
tgtggaatgcccaattgataaaagtggtgcaaatgatgatgacatggcaaataagaaggggttgagacgtagcaaccgtatccaaagggaatcatccaat |
54428565 |
T |
|
| Q |
497 |
gtggtcgcaatttgctagtaaatgaaggaagggatattaagcagtggtagtacaatgaatgtggtgtgcattttatgtgtgatatc |
582 |
Q |
| |
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| T |
54428564 |
gtggtcccagtttgctagtaaat----gaagggatattaagcggtggtagtacaatgaatgtggtgtgcattttatgtgtgatatc |
54428483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 634 - 768
Target Start/End: Original strand, 54430844 - 54430978
Alignment:
| Q |
634 |
atccaaacaatacaaactaatggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctccctcataaatgaac |
733 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
54430844 |
atccaaacaatacaaactaaaggaattcactttaattagcacttctcactaatggagttcatcaatcttctaattgtgtctatctctctcataaatgaac |
54430943 |
T |
|
| Q |
734 |
aataatctagatgtggggtaaatgaatggaatctc |
768 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
54430944 |
aatagtctagatgtggggtaaatgaatggaatctc |
54430978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 414 - 582
Target Start/End: Original strand, 31285511 - 31285670
Alignment:
| Q |
414 |
ataaaagtggtgcaaatgatgatgacatggcaaataagaaggggttgagacgtagcaaccgtatccaaagggaatcatccaatgtggtcgcaatttgcta |
513 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| || |||||||||||| || | ||| ||||||||||||||||||||||| || |||| || |
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| T |
31285511 |
ataaaagtggtgcaaatgatga---catggcaaataagaaaggattgagacgtagctacaggatc-aaagggaatcatccaatgtggtcccagtttgtta |
31285606 |
T |
|
| Q |
514 |
gtaaatgaaggaagggatattaagcagtggtagtacaatgaatgtggtgtgcattttatgtgtgatatc |
582 |
Q |
| |
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| T |
31285607 |
gtaaatgaag----ggatattaagtagtggtagtagaatgaatgtggtgtgcatttt-tgtgtgatatc |
31285670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 440 - 582
Target Start/End: Original strand, 31280616 - 31280752
Alignment:
| Q |
440 |
atggcaaataagaaggggttgagacgtagcaaccgtatccaaagggaatcatccaatgtggtcgcaatttgctagtaaatgaaggaagggatattaagca |
539 |
Q |
| |
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|||||||||||||| || |||||||||||| || | ||| ||||||||||||||||||||||| || |||| |||||||||||| |||||||||| | |
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| T |
31280616 |
atggcaaataagaaaggattgagacgtagctacaggatc-aaagggaatcatccaatgtggtcccagtttgttagtaaatgaag----ggatattaagta |
31280710 |
T |
|
| Q |
540 |
gtggtagtacaatgaatgtggtgtgcattttatgtgtgatatc |
582 |
Q |
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| T |
31280711 |
gtggtagtagaatgaatgtggtgtgcatttt-tgtgtgatatc |
31280752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 414 - 582
Target Start/End: Complemental strand, 9619608 - 9619449
Alignment:
| Q |
414 |
ataaaagtggtgcaaatgatgatgacatggcaaataagaaggggttgagacgtagcaaccgtatccaaagggaatcatccaatgtggtcgcaatttgcta |
513 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||||| || |||| || |
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| T |
9619608 |
ataaaagtggtgcaaatgatga---catggcaaataagaagggattgagacgtagctacaggatc-aaagggagtcatccaatgtggtcccagtttgtta |
9619513 |
T |
|
| Q |
514 |
gtaaatgaaggaagggatattaagcagtggtagtacaatgaatgtggtgtgcattttatgtgtgatatc |
582 |
Q |
| |
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||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
9619512 |
gtaaatgaagg----gatattaagtagtggtagtagaatgaatgtggtgtgcatttt-tgtgtgatatc |
9619449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 414 - 582
Target Start/End: Complemental strand, 9624578 - 9624419
Alignment:
| Q |
414 |
ataaaagtggtgcaaatgatgatgacatggcaaataagaaggggttgagacgtagcaaccgtatccaaagggaatcatccaatgtggtcgcaatttgcta |
513 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||| || | ||| ||||||| ||||||||||||||| || |||| || |
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| T |
9624578 |
ataaaagtggtgcaaatgatga---catggcaaataagaagggattgagacgtagctacaggatc-aaagggagtcatccaatgtggtcccagtttgtta |
9624483 |
T |
|
| Q |
514 |
gtaaatgaaggaagggatattaagcagtggtagtacaatgaatgtggtgtgcattttatgtgtgatatc |
582 |
Q |
| |
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||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
9624482 |
gtaaatgaagg----gatattaagtagtggtagtagaatgaatgtggtgtgcatttt-tgtgtgatatc |
9624419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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