View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20850_high_1 (Length: 401)
Name: NF20850_high_1
Description: NF20850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20850_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 210 - 372
Target Start/End: Original strand, 38108740 - 38108902
Alignment:
| Q |
210 |
gggatccaaagaactccaccattttaaagaagaagagaagcaactcaagctcaaaagcaacttaagctcatcgtagaaggaaactccaaatgaaggaaaa |
309 |
Q |
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| T |
38108740 |
gggatccaaagaactccacctttttaaagaagaagagaagcaactgaagctcaaaagcaacttaagctcatcgtagaaagaaactccaaatgaaggaaaa |
38108839 |
T |
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| Q |
310 |
gcgtgtagccggagttcgttttgcttgacgacgtcgcatcaacttcaactctatcacatgagt |
372 |
Q |
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| T |
38108840 |
gcgtgtagccggagttcgttttgcttgacgacgtcgcatcaacttcaactctatcacatgagt |
38108902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 38108598 - 38108722
Alignment:
| Q |
60 |
tgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaattaaatccattattgttgaaacattctgatgta |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38108598 |
tgtgggtgttgagattgtattgattgacattatattagactacataaaggttggaaccctcttaaaattaaatccattattgttgaaacattctgatgta |
38108697 |
T |
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| Q |
160 |
atctatctatgatctaataaaagat |
184 |
Q |
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| T |
38108698 |
atctatctatgatctaataaaagat |
38108722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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