View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20850_high_2 (Length: 391)
Name: NF20850_high_2
Description: NF20850
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20850_high_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 37858950 - 37858578
Alignment:
| Q |
19 |
tgtgctcttcaccagtcagtatcaatcattgatatgagagattactaatatagacagtgttattatgatatcattatcttgtccctcatattccatgctg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
37858950 |
tgtgctcttcaccagtcagtatcaatcattgatatgagagattactaatatagacagtgttattatgatatcattatcttgtccctcatataccctgctg |
37858851 |
T |
|
| Q |
119 |
atgatactgtttggaagaattttactgtgctaaacaagacggttaatgattttctgcatttataaggatttatgatgatgtttattgataccttgtgcac |
218 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37858850 |
atgatactgtttggaagaatttgactgagctaaacaagacggttaatgattttctgcatttataaggatttatgatgatgtttattgataccttgtgcac |
37858751 |
T |
|
| Q |
219 |
attataagtggtttcctggacttgaattgaaaagtctgttggaattctaggggcaacgaacctgcataagccgaaatnnnnnnntaaacagagaaaataa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37858750 |
attataagtggtttcctggacttgaattgaaaagtctgttggaattcgaggggcaacgaacctgcataagccgaaataaaaaaataaacagagaaaataa |
37858651 |
T |
|
| Q |
319 |
atcactcatacaaaaagaactagtggtaattaccttagacacgcatagttaaactcatgtatatatctactag |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37858650 |
atcactcatacaaaaagaactagtggtaattaccttagacacgcatagttaaactcatgtatatatctactag |
37858578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University