View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20852_high_1 (Length: 411)
Name: NF20852_high_1
Description: NF20852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20852_high_1 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: scaffold0194 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 30 - 389
Target Start/End: Complemental strand, 26090 - 25732
Alignment:
| Q |
30 |
ttatcctccaagcttgttaatttgaacctctcgtcattttctcctaacccatcatcaccacttaacatcaagttttggtcttctatcttattgtttaaga |
129 |
Q |
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| T |
26090 |
ttatcctccacgcttgttaatttgaacctctcgtcattttctcctaacccatcatcaccacttaacatcaagttttggtcttctatcttattgtttaaga |
25991 |
T |
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| Q |
130 |
caggaaacttgagaaaataaaccgggtcttcgatacctgattcttcgcggtttaaggctaatttaggtccaaaatctgcaaactgcatcacatctgcaaa |
229 |
Q |
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| T |
25990 |
caggaaacttgagaaaataaaccgggtcttcgatacctgattcttcgcggtttaaggctaatttaggtccaaaatctgcaaactgcatcacatctgcaaa |
25891 |
T |
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| Q |
230 |
actcattttatcaaaagaatttgcaccataaaatcctcctgaagtttgtgtctgaggcatgtaattatccaccattccgttgttcatctcactcgactgt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||| |
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| T |
25890 |
actcattttatcaaaagaatttgcaccataaaatcctcctgaagtttgtgtctgaggcatgtaattatccaccattccgttgttgttttcacccga-tgt |
25792 |
T |
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| Q |
330 |
ttcgccaactcgatacttcaaaagctgttcgtattgttgctgttgttggtgatgatgatg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25791 |
ttcgccaactcgatacttcaaaagctgttcgtattgttgctgttgttgatgatgatgatg |
25732 |
T |
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