View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20852_high_3 (Length: 383)
Name: NF20852_high_3
Description: NF20852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20852_high_3 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 41722341 - 41722678
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722341 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
41722440 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722441 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
41722540 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41722541 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgccttgcatattgcaaggaatccagcttttcatt |
41722640 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41722641 |
caaggacgaaacacataggcgttcaatatcattttgtt |
41722678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 34355941 - 34356200
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355941 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
34356040 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34356041 |
agtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcagctacccaagcatgcaaggaagctatttggatg |
34356140 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagt |
271 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||| |||||||||||||||| |
|
|
| T |
34356141 |
caaaggttaatggaggaactcgggcacaagcaagagaaaattactgtgtattgtgacagt |
34356200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 267 - 349
Target Start/End: Original strand, 34359375 - 34359457
Alignment:
| Q |
267 |
acagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34359375 |
acagtcagagtgccttacacattgcaaggaatccagcttttcattcaaggacgaagcacattggcgttcaatatcattttgtt |
34359457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 30946569 - 30946232
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30946569 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttacaggaggagc |
30946470 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946469 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
30946370 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946369 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
30946270 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30946269 |
caaggacgaaacacataggcgttcaatatcattttgtt |
30946232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 42269834 - 42270171
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269834 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
42269933 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269934 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
42270033 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42270034 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgccttgcatattgcaaggaatccagcttttcatt |
42270133 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42270134 |
caaggacgaaacacataggcgttcaatatcattttgtt |
42270171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 48698207 - 48697870
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698207 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
48698108 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698107 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
48698008 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
48698007 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgccttgcatattgcaaggaatccagcttttcatt |
48697908 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48697907 |
caaggacgaaacacataggcgttcaatatcattttgtt |
48697870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 2002831 - 2003151
Alignment:
| Q |
29 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
2002831 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttcacacttgcaggaggagcagtaagttggttgtcaa |
2002930 |
T |
|
| Q |
129 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
228 |
Q |
| |
|
| |||||| | || |||||||| || || |||||||| || || |||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
2002931 |
aattacaatctgtcgtagctctatctactacagaagctgaatatatggcagctatgcaagcttgcaaggaagctatttggatacaaagactaatggaaga |
2003030 |
T |
|
| Q |
229 |
actcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacata |
328 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||| || || || |||||| |
|
|
| T |
2003031 |
actcgggcacagtcaacaacaaattgttgtgtattgtgacagttagagtgcattgcatattgcaaggaatccattctttcattcgagaacaaaacacata |
2003130 |
T |
|
| Q |
329 |
ggcgttcaatatcattttgtt |
349 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
2003131 |
gatgttcaataccattttgtt |
2003151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 9440477 - 9440140
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440477 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
9440378 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440377 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
9440278 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9440277 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgccttgcatattgcaaggaatccagcttttcatt |
9440178 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
9440177 |
caaggacgaaacacataggcattcaatatcattttgtt |
9440140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 24594860 - 24594540
Alignment:
| Q |
29 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||| | |
|
|
| T |
24594860 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttcacacttgcaggaggagcgataagttgattgtcaa |
24594761 |
T |
|
| Q |
129 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
228 |
Q |
| |
|
| |||||| | || |||||||| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
24594760 |
aattacaatctgtcgtagctctatctactacagaagctgaatatatggcagctacacaagcttgcaaggaagctatttggatacaaagactaatggaaga |
24594661 |
T |
|
| Q |
229 |
actcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacata |
328 |
Q |
| |
|
|||||| |||| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || || || |||||| |
|
|
| T |
24594660 |
actcggccacagtcaacaacaaattgttgtgtattgtgacagtcagagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacata |
24594561 |
T |
|
| Q |
329 |
ggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|| |||||||| ||||||||| |
|
|
| T |
24594560 |
ggtgttcaataccattttgtt |
24594540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 27875095 - 27874758
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875095 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
27874996 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874995 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
27874896 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27874895 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattactgtgtattgtgacagtcagagtgccttgcatattgcaaggaatccagcttttcatt |
27874796 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
27874795 |
caaggacgaaacacataggcattcaatatcattttgtt |
27874758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 26977279 - 26976942
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977279 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
26977180 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| || |
|
|
| T |
26977179 |
agtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcagctacccaagcatgcaaggaagctatctgggtg |
26977080 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977079 |
caaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
26976980 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26976979 |
caaggacgaagcacataggtgttcaatatcattttgtt |
26976942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 1472833 - 1472514
Alignment:
| Q |
29 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
1472833 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttcacacttgcaggaggagcagtaagttggttgtcaa |
1472734 |
T |
|
| Q |
129 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
228 |
Q |
| |
|
| |||| || || |||||||| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
1472733 |
aattac-aattgtcgtagctctctctactacagaagctgaatatatggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaaga |
1472635 |
T |
|
| Q |
229 |
actcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacata |
328 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||| |||||||| || || || |||||| |
|
|
| T |
1472634 |
actcgtgcacagtcaacaacaaattgttgtgtattgtgacagtcagagtgcattgcacattgcatgtaatccagtctttcattcgagaacaaaacacata |
1472535 |
T |
|
| Q |
329 |
ggcgttcaatatcattttgtt |
349 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
1472534 |
gatgttcaataccattttgtt |
1472514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 350
Target Start/End: Original strand, 21965317 - 21965650
Alignment:
| Q |
15 |
agttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagt |
114 |
Q |
| |
|
|||||||| ||||||||||| ||||||| |||||||| |||||||||||| |||||||| |||| ||| ||||||||||||||| || || ||||||| |
|
|
| T |
21965317 |
agttaactatcaggggttatattgattcgaattttgcacttgatcatgataatagaaaatcaactattggatatgtgttcacgcttccaagatgagcagt |
21965416 |
T |
|
| Q |
115 |
aagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaa |
214 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| || |||| ||||| | ||||||| |||||||| |||| |||||||||||| | |
|
|
| T |
21965417 |
aagttggttacccaagttacaaactattgtagctctgtcaacgtcaaaagcttcgtacaagacagctaccttagcatgcatggaaactatttggatgcga |
21965516 |
T |
|
| Q |
215 |
aggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaa |
314 |
Q |
| |
|
|||||||| ||| |||| |||| || ||| ||| ||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
21965517 |
aggttaattgagcaacttaggcataagcagcaacgaattattgtgtat--tgacagtcagagtaccttgcacatttcaaggaatccaacttttcattcaa |
21965614 |
T |
|
| Q |
315 |
ggacgaagcacataggcgttcaatatcattttgttt |
350 |
Q |
| |
|
| ||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
21965615 |
gaacggagcacacaggcgttcaatattattttgttt |
21965650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 18967120 - 18967241
Alignment:
| Q |
98 |
cttgcaggaggagcagtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaagg |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | |
|
|
| T |
18967120 |
cttgcaggaggagcagtaagttggttatccaagttacaa-ctgttgtagctctgtcaacgacagaagctgagtacattgcagctacccaagcatgcaatg |
18967218 |
T |
|
| Q |
198 |
aagctatttggatgcaaaggtta |
220 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
18967219 |
aagctatttggatgcaaacgtta |
18967241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 18967256 - 18967336
Alignment:
| Q |
269 |
agtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
18967256 |
agtcagagtgccttacacattgcaaggaatccaacttttcattcaaggacgaaacacataggcgttaaatatcattttgtt |
18967336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 5819661 - 5819324
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819661 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
5819562 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
5819561 |
agtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcagctacccaagcatgcaaggaagctatctggatg |
5819462 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819461 |
caaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
5819362 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819361 |
caaggacgaagcacataggcgttcaatatcattttgtt |
5819324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 54545076 - 54545410
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
54545076 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacacttgccggaggagc |
54545175 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54545176 |
agtaagttggttgtccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcagctacccaagcatgcaaggaagctatttggatg |
54545275 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||| |
|
|
| T |
54545276 |
caaaggttaatggaggaactcgggcacaagcaggaacaaattattgtgtattgtgacagtcagagtgcattgcacattgcaaggaattcaacttttcatt |
54545375 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcatttt |
346 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
54545376 |
caaggacgaaacacataggcgttcaatatcatttt |
54545410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 29 - 349
Target Start/End: Original strand, 42588896 - 42589216
Alignment:
| Q |
29 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
42588896 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactgctggttatgtgttcacacttgcaggaggagcggtaagttggttgtcaa |
42588995 |
T |
|
| Q |
129 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
228 |
Q |
| |
|
| |||||| | || |||||||| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
42588996 |
aattacaatctgtcgtagctctatctactacagaagctgaatatatggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaaga |
42589095 |
T |
|
| Q |
229 |
actcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacata |
328 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| || || || |||||| |
|
|
| T |
42589096 |
actcgggcacagtcaacaacaaattgttgtgtattgtgacagtcatagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacata |
42589195 |
T |
|
| Q |
329 |
ggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|| |||||||| ||||||||| |
|
|
| T |
42589196 |
ggtgttcaataccattttgtt |
42589216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 25880790 - 25881030
Alignment:
| Q |
28 |
gggttatgttgattcagattttgcaggtgatcatgataaaagaaaa---tctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttg |
124 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| |||||||| |||| |||||||| ||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
25880790 |
gggttatgtagattcagattttgcaggagatcttgataaaaaaaaaaaatctactaccggttatgtgttcatacttgcaggaggagcaataagttggttg |
25880889 |
T |
|
| Q |
125 |
tccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatgg |
224 |
Q |
| |
|
|| || ||||||| ||||| ||||| || || ||| | || || || || | | |||| ||||| ||| |||||||||||||||| |||||| |||||| |
|
|
| T |
25880890 |
tcaaaattacaaattgttgtcgctctatctactacatatgctgaatatattgtacctacgcaagcttgctaggaagctatttggatacaaaggctaatgg |
25880989 |
T |
|
| Q |
225 |
aggaactcgggcacaaacaggaacaaattattgtgtattgtg |
266 |
Q |
| |
|
| ||| || ||||||| || |||||||| |||||||||||| |
|
|
| T |
25880990 |
aagaa-tcaggcacaatcaacaacaaattgttgtgtattgtg |
25881030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 25880233 - 25880348
Alignment:
| Q |
22 |
tgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttgg |
121 |
Q |
| |
|
||||| ||||| |||| ||||||||||| |||||||| ||||||||||| ||||| ||| |||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
25880233 |
tgtcaagggttttgttaattcagattttataggtgatcgtgataaaagaatatctaataccggttatgtgttcacacttgcaagaggagcaataagttgg |
25880332 |
T |
|
| Q |
122 |
ttgtccaagttacaaa |
137 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
25880333 |
ttgtcaaaattacaaa |
25880348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 829410 - 829747
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829410 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcaggataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
829509 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
829510 |
agtaagttggttatccaagttacaaactgttgtagctctgtcaacgacagaagctgagtacatggcagctacccaagcatgcaaggaagctatctggatg |
829609 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829610 |
caaaggttaatggaggaactcgggcacaagcaggagaaaattactgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
829709 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
829710 |
caaggacgaaacacataggcgttcaatatcattttgtt |
829747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 349
Target Start/End: Original strand, 28715014 - 28715341
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||| ||||||| |||||| ||||||| |
|
|
| T |
28715014 |
cagagttaattgtcatgggttatgttgattcagattttgccggtgatcatgatgaaagaaaatcttttactggttacgtgttcatgcttgcgagaggagc |
28715113 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28715114 |
agtaagttggttatccaagttacaaactgttgtagctatgtcaacgtcagaagctgagtacatggcagctacccaagcatgcaaggaagctatttggatg |
28715213 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||| ||| | ||||||||||| |||||| |||||| || |
|
|
| T |
28715214 |
caaaggttaatggaggtactcgggcacaagcaggagcaaattactgtgtattgtgatagttatagtgccttgca----------aatccaacttttcgtt |
28715303 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
28715304 |
caaggatgaagcacataggtgttcaatatcattttgtt |
28715341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 13841305 - 13840978
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
||||||||| || || |||||||||||||||||||||| || ||||||||||||| | |||||||||| | ||||||||||||| || | ||||||| |
|
|
| T |
13841305 |
cagagttaaatgacaagggttatgttgattcagattttacaagtgatcatgataatataaaatctact---gattatgtgttcacgtttatacgaggagc |
13841209 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
||||||||||| ||||||||| || ||||||| ||||||||||| || | |||||||||||| || | || || |||||||||| |||||| ||| |
|
|
| T |
13841208 |
ggtaagttggttatccaagttagaa-----tgtagctttgtcaacgacaaaa-ctgagtacatggcatcttcccatgcttgcaaggaagttatttgaatg |
13841115 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | ||||||| | |||||||||||| | ||| |||||| ||||||||||| ||| || |||||||| |
|
|
| T |
13841114 |
caaaggttaatggaggaacttgggcacaaacaacatcaaattactatgtattgtgacaattagaatgcctttcacattgcaagaaattca-tttttcatt |
13841016 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
||||||| || |||||| | |||||||||||||||||| |
|
|
| T |
13841015 |
caaggacaaaacacataagtgttcaatatcattttgtt |
13840978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 349
Target Start/End: Complemental strand, 28421 - 28084
Alignment:
| Q |
12 |
cagagttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||| |
|
|
| T |
28421 |
cagagttaactgtcaggggttatgttgattcagattttgtaggtgatcatgataaaagaaaatctactactgattatgtgttcacactttcaggaggagc |
28322 |
T |
|
| Q |
112 |
agtaagttggttgtccaagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatg |
211 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28321 |
agtaagttggttatccaagttacaaactgttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggttg |
28222 |
T |
|
| Q |
212 |
caaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
311 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28221 |
caaaggtttatggaggaactcgtgcacaagcaggattaaattactgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcatt |
28122 |
T |
|
| Q |
312 |
caaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28121 |
caaggacgaaacacataggcgttcaatatcattttgtt |
28084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 36 - 349
Target Start/End: Complemental strand, 2324469 - 2324163
Alignment:
| Q |
36 |
ttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtccaagttaca |
135 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| ||| ||||||||||| |
|
|
| T |
2324469 |
ttgagtcagattttgcaggtgatcatgataaaagaaaatctactactagttatgtgttcacacttgcaggaggagttgtaagttagttatccaagttaca |
2324370 |
T |
|
| Q |
136 |
aacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcggg |
235 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2324369 |
aactgttgtagctttgtcaacgacagaagctaagtacatggcagctacccaagcatgcaaggaagctatttggatgcaaaggttaatggaggaactcggg |
2324270 |
T |
|
| Q |
236 |
cacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacataggcgttc |
335 |
Q |
| |
|
||||| ||||| |||| | | ||||||||| ||||||| || ||||||||||||||||| |||||||||||| ||| ||| |||| | ||||| |
|
|
| T |
2324269 |
cacaagcaggagaaaatcactttgtattgtggcagtcag------gtggacattgcaaggaatccatcttttcattcaaagacaaagaacattgacgttc |
2324176 |
T |
|
| Q |
336 |
aatatcattttgtt |
349 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2324175 |
-atatcattttgtt |
2324163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 29 - 349
Target Start/End: Complemental strand, 7505132 - 7504812
Alignment:
| Q |
29 |
ggttatgttgattcagattttgcaggtgatcatgataaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| ||||| | |
|
|
| T |
7505132 |
ggttatgttgattcagattttgcaggtgatcttgataaaagaagatctactactggttatgtgttcacacttgcaggaggagcggtaagttgattgtcaa |
7505033 |
T |
|
| Q |
129 |
agttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagctactcaagcatgcaaggaagctatttggatgcaaaggttaatggagga |
228 |
Q |
| |
|
| |||||| || |||||||| || || |||||||| || || ||||||||||| ||||| |||||||||||||||||||| ||||| ||||||| || |
|
|
| T |
7505032 |
aattacaatttgtcgtagctctatctactacagaagctgaatatatggcagctacgcaagcttgcaaggaagctatttggatacaaagactaatggaaga |
7504933 |
T |
|
| Q |
229 |
actcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcacata |
328 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || || || |||||| |
|
|
| T |
7504932 |
actcgtgcacagtcaacaacaaattgttgtgtattgtgacagtcagagtgcattgcacattgcaaggaatccagtctttcattcgagaacaaaacacata |
7504833 |
T |
|
| Q |
329 |
ggcgttcaatatcattttgtt |
349 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
7504832 |
gatgttcaataccattttgtt |
7504812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 30 - 346
Target Start/End: Original strand, 22509869 - 22510182
Alignment:
| Q |
30 |
gttatgttgattcagattttgcaggtgatcatgat--aaaagaaaatctactactggttatgtgttcacgcttgcaggaggagcagtaagttggttgtcc |
127 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||| || || ||||| ||||| ||||| ||| | |||||||||||| |||||||||| |
|
|
| T |
22509869 |
gttatgttgattcagattttgaaggtgatcatgattgaaaaaaatatatactattggtt-----ttcacatttgtaagaggagcagtaatttggttgtcc |
22509963 |
T |
|
| Q |
128 |
aagttacaaacggttgtagctctgtcaacgacagaagcggagtacatggcagc-tactcaagcatgcaaggaagctatttggatgcaaaggttaatggag |
226 |
Q |
| |
|
||||||| || |||| |||||||||||| | |||| || ||||||| || |||| | | ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22509964 |
aagttaccaattgttgaagctctgtcaacaagagaaattgaatacatggaagtatact-aggtttgcaaggaagctatttggatgataaggttaatggag |
22510062 |
T |
|
| Q |
227 |
gaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaaggaatccagcttttcattcaaggacgaagcaca |
326 |
Q |
| |
|
||||||| |||||| | ||||||||| | |||||||||| |||||||||| |||||||||| |||| |||||| |||| |||| | ||||| ||||| |
|
|
| T |
22510063 |
gaactcgcgcacaagtatcaacaaattactttgtattgtgatagtcagagtgtcttgcacatttcaagcaatccaactttgtattccaagacgatgcaca |
22510162 |
T |
|
| Q |
327 |
taggcgttcaatatcatttt |
346 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
22510163 |
aaggcgttcaataccatttt |
22510182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 195 - 349
Target Start/End: Complemental strand, 41413783 - 41413629
Alignment:
| Q |
195 |
aggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattgcaag |
294 |
Q |
| |
|
|||||||||||| |||||||| |||||| ||||||||| |||| ||| ||||||||||||| |||||||| ||| |||||| ||||||||||||||| |
|
|
| T |
41413783 |
aggaagctattttgatgcaaatgttaattgaggaactcaaacacagacaataacaaattattgtatattgtgatagttagagtgtcttgcacattgcaag |
41413684 |
T |
|
| Q |
295 |
gaatccagcttttcattcaaggacgaagcacataggcgttcaatatcattttgtt |
349 |
Q |
| |
|
|||||||| || ||||||||||| | ||| ||||||||||||||||||||||| |
|
|
| T |
41413683 |
taatccagccttccattcaaggacaaggcatgtaggcgttcaatatcattttgtt |
41413629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 191 - 346
Target Start/End: Original strand, 34973589 - 34973746
Alignment:
| Q |
191 |
tgcaaggaagctatttggatgcaaaggttaatggaggaactcgggcacaaacaggaacaaattattgtgtattgtgacagtcagagtgccttgcacattg |
290 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||| | ||||| || || | ||||||||||||| ||| ||| | |||| ||||||||||| |
|
|
| T |
34973589 |
tgcaaggaagctgtttggatgcaaaggttaatggagggacttagacacaagcatcaagacattattgtgtattatgaaagttaaagtgtcttgcacattg |
34973688 |
T |
|
| Q |
291 |
caaggaatccagc--ttttcattcaaggacgaagcacataggcgttcaatatcatttt |
346 |
Q |
| |
|
| | |||||| | ||||||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
34973689 |
tatgaaatccaacttttttcattcaaggacgaagcaaataggcatttaatatcatttt |
34973746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 34973470 - 34973530
Alignment:
| Q |
17 |
ttaactgtcaggggttatgttgattcagattttgcaggtgatcatgataaaagaaaatcta |
77 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
34973470 |
ttaactgttaggggttatgtcgattcagattttgcagatgatcataataaaagaaaatcta |
34973530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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