View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20852_high_4 (Length: 350)

Name: NF20852_high_4
Description: NF20852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20852_high_4
NF20852_high_4
[»] chr6 (15 HSPs)
chr6 (61-334)||(31094861-31095129)
chr6 (129-338)||(31050255-31050464)
chr6 (30-62)||(17251239-17251271)
chr6 (34-65)||(27605413-27605444)
chr6 (288-334)||(31106424-31106470)
chr6 (30-63)||(26485668-26485701)
chr6 (262-334)||(31042842-31042917)
chr6 (30-62)||(1135165-1135197)
chr6 (28-64)||(1751658-1751694)
chr6 (30-62)||(7056124-7056156)
chr6 (34-62)||(17193387-17193415)
chr6 (34-62)||(22050277-22050305)
chr6 (30-62)||(24356283-24356315)
chr6 (30-62)||(30237464-30237496)
chr6 (30-62)||(34379084-34379116)
[»] scaffold0202 (1 HSPs)
scaffold0202 (59-334)||(3577-3852)
[»] chr7 (15 HSPs)
chr7 (29-65)||(46563353-46563389)
chr7 (30-65)||(10227481-10227516)
chr7 (28-65)||(8965883-8965920)
chr7 (30-63)||(47408338-47408371)
chr7 (34-65)||(5732056-5732087)
chr7 (29-64)||(8966130-8966165)
chr7 (34-65)||(17896474-17896505)
chr7 (30-64)||(3177908-3177942)
chr7 (34-63)||(6799648-6799677)
chr7 (34-63)||(33921759-33921788)
chr7 (30-63)||(38168773-38168806)
chr7 (34-62)||(33174036-33174064)
chr7 (30-62)||(33258106-33258138)
chr7 (29-65)||(35112406-35112442)
chr7 (30-62)||(42841852-42841884)
[»] chr4 (30 HSPs)
chr4 (29-63)||(9746230-9746264)
chr4 (30-64)||(38027557-38027591)
chr4 (29-67)||(41813620-41813658)
chr4 (30-62)||(49089134-49089166)
chr4 (30-65)||(1180882-1180917)
chr4 (29-67)||(1146277-1146315)
chr4 (29-63)||(1181130-1181164)
chr4 (28-62)||(37551650-37551684)
chr4 (29-63)||(37551893-37551927)
chr4 (28-66)||(41813871-41813909)
chr4 (30-64)||(43887964-43887998)
chr4 (30-64)||(45725764-45725798)
chr4 (34-64)||(56576086-56576116)
chr4 (30-63)||(9220024-9220057)
chr4 (34-63)||(22828384-22828413)
chr4 (34-63)||(38009749-38009778)
chr4 (34-63)||(38617292-38617321)
chr4 (30-63)||(53691883-53691916)
chr4 (34-62)||(354198-354226)
chr4 (30-62)||(6195252-6195284)
chr4 (34-62)||(8735621-8735649)
chr4 (34-62)||(9834512-9834540)
chr4 (34-62)||(23621577-23621605)
chr4 (35-63)||(30939388-30939416)
chr4 (34-62)||(33755015-33755043)
chr4 (30-62)||(43888209-43888241)
chr4 (34-62)||(44013897-44013925)
chr4 (34-62)||(44217938-44217966)
chr4 (34-62)||(53599770-53599798)
chr4 (30-62)||(55935335-55935367)
[»] chr1 (18 HSPs)
chr1 (28-62)||(32348200-32348234)
chr1 (30-62)||(32168292-32168324)
chr1 (30-62)||(36318577-36318609)
chr1 (30-62)||(51613636-51613668)
chr1 (34-65)||(18033803-18033834)
chr1 (30-64)||(32168537-32168571)
chr1 (34-63)||(29830982-29831011)
chr1 (34-63)||(30686640-30686669)
chr1 (34-63)||(35531274-35531303)
chr1 (30-59)||(51974154-51974183)
chr1 (34-62)||(1024785-1024813)
chr1 (34-62)||(12231051-12231079)
chr1 (30-62)||(12721665-12721697)
chr1 (34-62)||(13566908-13566936)
chr1 (30-62)||(18344551-18344583)
chr1 (30-62)||(37735119-37735151)
chr1 (34-62)||(43500735-43500763)
chr1 (30-58)||(52649713-52649741)
[»] scaffold0009 (1 HSPs)
scaffold0009 (30-63)||(147110-147143)
[»] scaffold0006 (1 HSPs)
scaffold0006 (28-65)||(96042-96079)
[»] chr8 (23 HSPs)
chr8 (28-65)||(11163489-11163526)
chr8 (30-63)||(14061131-14061164)
chr8 (34-67)||(38482770-38482803)
chr8 (30-65)||(3720905-3720940)
chr8 (29-60)||(38074258-38074289)
chr8 (28-62)||(3720660-3720694)
chr8 (29-63)||(17718482-17718516)
chr8 (30-63)||(167459-167492)
chr8 (34-63)||(2888450-2888479)
chr8 (34-63)||(15596573-15596602)
chr8 (34-63)||(18291692-18291721)
chr8 (29-62)||(23848783-23848816)
chr8 (30-62)||(7483967-7483999)
chr8 (34-62)||(8453219-8453247)
chr8 (34-62)||(18842758-18842786)
chr8 (29-65)||(23429886-23429922)
chr8 (30-62)||(26740120-26740152)
chr8 (34-62)||(34982058-34982086)
chr8 (30-62)||(35029771-35029803)
chr8 (34-62)||(35052282-35052310)
chr8 (30-62)||(35296269-35296301)
chr8 (31-63)||(36111925-36111957)
chr8 (30-62)||(41701465-41701497)
[»] chr5 (29 HSPs)
chr5 (30-63)||(18437302-18437335)
chr5 (30-62)||(4427385-4427417)
chr5 (30-62)||(6008092-6008124)
chr5 (34-65)||(9127328-9127359)
chr5 (32-63)||(25785868-25785899)
chr5 (34-65)||(39073255-39073286)
chr5 (28-62)||(3818159-3818193)
chr5 (28-62)||(4609230-4609264)
chr5 (28-62)||(8229784-8229818)
chr5 (28-62)||(21157838-21157872)
chr5 (28-66)||(42394351-42394389)
chr5 (34-63)||(4175459-4175488)
chr5 (34-63)||(7579646-7579675)
chr5 (34-63)||(16124239-16124268)
chr5 (28-57)||(18392956-18392985)
chr5 (28-57)||(18676399-18676428)
chr5 (29-62)||(18676637-18676670)
chr5 (30-63)||(31803531-31803564)
chr5 (29-65)||(1795341-1795377)
chr5 (34-62)||(2673958-2673986)
chr5 (29-65)||(4608983-4609019)
chr5 (34-62)||(4985155-4985183)
chr5 (30-62)||(13703304-13703336)
chr5 (29-57)||(21150459-21150487)
chr5 (29-57)||(21157600-21157628)
chr5 (34-62)||(25344171-25344199)
chr5 (30-62)||(37809966-37809998)
chr5 (34-62)||(38910484-38910512)
chr5 (30-62)||(39893789-39893821)
[»] chr3 (16 HSPs)
chr3 (31-63)||(41351182-41351214)
chr3 (28-62)||(2642925-2642959)
chr3 (29-63)||(23771266-23771300)
chr3 (29-62)||(20105172-20105205)
chr3 (34-63)||(40139830-40139859)
chr3 (34-63)||(51219081-51219110)
chr3 (34-62)||(2858566-2858594)
chr3 (34-62)||(20105402-20105430)
chr3 (34-62)||(29803877-29803905)
chr3 (34-62)||(33491128-33491156)
chr3 (30-62)||(33874535-33874567)
chr3 (34-62)||(41425858-41425886)
chr3 (30-62)||(41926905-41926937)
chr3 (30-62)||(44092263-44092295)
chr3 (34-62)||(45101347-45101375)
chr3 (30-62)||(47104389-47104421)
[»] scaffold0003 (2 HSPs)
scaffold0003 (28-63)||(252817-252852)
scaffold0003 (29-62)||(252574-252607)
[»] chr2 (20 HSPs)
chr2 (34-65)||(11222299-11222330)
chr2 (30-65)||(35158334-35158369)
chr2 (28-62)||(13754178-13754212)
chr2 (30-60)||(13965832-13965862)
chr2 (30-64)||(34262806-34262840)
chr2 (34-63)||(10812428-10812457)
chr2 (30-63)||(13215618-13215651)
chr2 (34-67)||(19594579-19594612)
chr2 (34-63)||(26342809-26342838)
chr2 (34-63)||(34357407-34357436)
chr2 (34-63)||(36375802-36375831)
chr2 (28-65)||(37077147-37077184)
chr2 (30-62)||(8443903-8443935)
chr2 (30-62)||(9707012-9707044)
chr2 (30-62)||(13849701-13849733)
chr2 (34-62)||(15182987-15183015)
chr2 (34-62)||(15893566-15893594)
chr2 (30-62)||(19594331-19594363)
chr2 (30-62)||(32854768-32854800)
chr2 (34-62)||(44360662-44360690)
[»] scaffold0036 (1 HSPs)
scaffold0036 (28-62)||(23360-23394)
[»] scaffold2146 (1 HSPs)
scaffold2146 (30-63)||(777-810)
[»] scaffold0280 (1 HSPs)
scaffold0280 (34-63)||(8383-8412)
[»] scaffold0236 (1 HSPs)
scaffold0236 (28-57)||(14239-14268)
[»] scaffold0135 (1 HSPs)
scaffold0135 (30-63)||(30675-30708)
[»] scaffold0018 (1 HSPs)
scaffold0018 (29-70)||(184355-184396)
[»] scaffold0886 (1 HSPs)
scaffold0886 (29-61)||(4738-4770)
[»] scaffold0831 (1 HSPs)
scaffold0831 (30-62)||(3034-3066)
[»] scaffold0343 (1 HSPs)
scaffold0343 (30-62)||(7649-7681)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 61 - 334
Target Start/End: Complemental strand, 31095129 - 31094861
Alignment:
Q  61 tatatgagtggtgacagttcttctattcctactaggtctttgatgtttgttgaatacatatgtatttaagagtatcaccaatattacaaggatcgtcggc 160  Q
    ||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| |||||||||||||    
T  31095129 tatatcagtggtgacagttcctctattcctgctaggtctttgatgtttgttgaatacatatgcatttaagaagatcaccaatattaaaaggatcgtcggc 31095030  T
Q  161 ttcttcgaaaaaacccgaatgttgtctccaccttatagggcgttaatatcccatgtggtcactgcttttggctgctactgcatttgtaaccccgtcgttg 260  Q
    ||||  || | ||||| |||| |||||||||||||||| |||||||||| ||||| |||| ||||||||||||||     |||||||||||||||| |||    
T  31095029 ttctgtgacataaccccaatgctgtctccaccttatagagcgttaatattccatgcggtcgctgcttttggctgc-----catttgtaaccccgtcattg 31094935  T
Q  261 atgcatcctcttcctcgtacgacgccatctctctatttgtgctagttactcaagttgaagacttggaccatata 334  Q
     |||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31094934 ctgcatcttcttcctcgtacgacgtcatctctctatttgtgctagttacttaagttgaagacttggaccatata 31094861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 129 - 338
Target Start/End: Original strand, 31050255 - 31050464
Alignment:
Q  129 agagtatcaccaatattacaaggatcgtcggcttcttcgaaaaaacccgaatgttgtctccaccttatagggcgttaatatcccatgtggtcactgcttt 228  Q
    |||| ||||||||||||| |||||||||||||||||  || | | ||| |||||||||||||||||||||||||||||||||||||| |||| ||||||     
T  31050255 agaggatcaccaatattaaaaggatcgtcggcttctgtgacatagccccaatgttgtctccaccttatagggcgttaatatcccatgcggtcgctgcttc 31050354  T
Q  229 tggctgctactgcatttgtaaccccgtcgttgatgcatcctcttcctcgtacgacgccatctctctatttgtgctagttactcaagttgaagacttggac 328  Q
    | |||||||||||||||||||||||||||| | |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31050355 tagctgctactgcatttgtaaccccgtcgtcgctgcatcctccaactcgtacgacgccatctctctatttgtgctagttactcaagttgaagacttggac 31050454  T
Q  329 catatagtat 338  Q
    ||||||||||    
T  31050455 catatagtat 31050464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 17251271 - 17251239
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  17251271 aaaagtgacaattaaaaaggaacggaggtagta 17251239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 27605444 - 27605413
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  27605444 gtgacaattaaaaaggaacggaggtagtatat 27605413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 31106424 - 31106470
Alignment:
Q  288 tctctctatttgtgctagttactcaagttgaagacttggaccatata 334  Q
    ||||||||||||||| ||| ||  |||||||||||||||||||||||    
T  31106424 tctctctatttgtgcaagtcacgtaagttgaagacttggaccatata 31106470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 26485701 - 26485668
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||| ||||||||||    
T  26485701 aaaagtgacaattaaaaaggaacagaggtagtat 26485668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 31042842 - 31042917
Alignment:
Q  262 tgcatcctcttcctcgtacgacgccatctctctatttgtgctagttactcaag---ttgaagacttggaccatata 334  Q
    |||||||||||||||| ||| | || ||||||||||||||| ||||||  |||   || |||||||||||||||||    
T  31042842 tgcatcctcttcctcgcacgccaccgtctctctatttgtgcaagttacagaagtaattaaagacttggaccatata 31042917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 1135197 - 1135165
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||| ||||||||    
T  1135197 aaaagtgacaattaaaaaggaacgaaggtagta 1135165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 1751658 - 1751694
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  1751658 tcaaaagtgacacttaaaaaggaacggagggagtata 1751694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 7056156 - 7056124
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||| ||||||||||||    
T  7056156 aaaagtgacaattaaaaaggtacggaggtagta 7056124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 17193387 - 17193415
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  17193387 gtgacaattaaaaaggaacggaggtagta 17193415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 22050277 - 22050305
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  22050277 gtgacaattaaaaaggaacggaggtagta 22050305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 24356283 - 24356315
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||| ||||    
T  24356283 aaaagtgacaattaaaaaggaacggagggagta 24356315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 30237464 - 30237496
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||| ||||||||||||||||||||||||||||    
T  30237464 aaaaatgacaattaaaaaggaacggaggtagta 30237496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 34379084 - 34379116
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||| ||||||||||||||||||||||    
T  34379084 aaaagtgacagttaaaaaggaacggaggtagta 34379116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 59 - 334
Target Start/End: Complemental strand, 3852 - 3577
Alignment:
Q  59 agtatatgagtggtgacagttcttctattcctactaggtctttgatgtttgttgaatacatatgtatttaagagtatcaccaatattacaaggatcgtcg 158  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||||| || |||||||||| |||||| ||||    
T  3852 agtatatgagtggtgacagttcctctattcctattaggtctttgatgcttgttgaatacatatatatttaagaggattaccaatattaaaaggattgtcg 3753  T
Q  159 gcttcttcgaaaaaacccgaatgttgtctccaccttatagggcgttaatatcccatgtggtcactgcttttggctgctactgcatttgtaaccccgtcgt 258  Q
     ||| | | | |   ||  ||||||||||||||||||||||||||||||| |||  | |||| |||||| |||||||||| |||||||||||||||||||    
T  3752 acttttacaacactgcctcaatgttgtctccaccttatagggcgttaataccccccgcggtcgctgcttctggctgctaccgcatttgtaaccccgtcgt 3653  T
Q  259 tgatgcatcctcttcctcgtacgacgccatctctctatttgtgctagttactcaagttgaagacttggaccatata 334  Q
     | ||||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||| ||||    
T  3652 cgctgcatcctcttcctcatacgacaccatctctccatttgtgctagttactgaagttgaagacttggaccttata 3577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 46563353 - 46563389
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    |||||||||||||||||||||||||||||||||||||    
T  46563353 caaaagtgacaattaaaaaggaacggaggtagtatat 46563389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 10227481 - 10227516
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||||||    
T  10227481 aaaagtgacaattaaaaaggaacggaggtagtatat 10227516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 8965920 - 8965883
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    |||||||||||||||||||||||||||||| |||||||    
T  8965920 tcaaaagtgacaattaaaaaggaacggagggagtatat 8965883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 47408338 - 47408371
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||||||    
T  47408338 aaaagtgacaattaaaaaggaacggaggtagtat 47408371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 5732087 - 5732056
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  5732087 gtgacaattaaaaaggaacggaggtagtatat 5732056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 8966130 - 8966165
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8966130 caaaagtgacaattaaaaaggaacggagggagtata 8966165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 17896505 - 17896474
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  17896505 gtgacaattaaaaaggaacggaggtagtatat 17896474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 3177942 - 3177908
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||||||||||||||||||||||||||| ||||||    
T  3177942 aaaagtgacaattaaaaaggaacggagggagtata 3177908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 6799648 - 6799677
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  6799648 gtgacaattaaaaaggaacggaggtagtat 6799677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 33921788 - 33921759
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  33921788 gtgacaattaaaaaggaacggaggtagtat 33921759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 38168806 - 38168773
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||| ||||||||||||||    
T  38168806 aaaagtgacaattaaaaagaaacggaggtagtat 38168773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 33174036 - 33174064
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  33174036 gtgacaattaaaaaggaacggaggtagta 33174064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 33258106 - 33258138
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||| ||||||||||||||||||||||||||||    
T  33258106 aaaaatgacaattaaaaaggaacggaggtagta 33258138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 35112442 - 35112406
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  35112442 caaaagtgacacttaaaaaggaacggagggagtatat 35112406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 42841884 - 42841852
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||| ||||||    
T  42841884 aaaagtgacaattaaaaaggaacggatgtagta 42841852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 9746264 - 9746230
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||||||||||||||||||||||||||||||    
T  9746264 caaaagtgacaattaaaaaggaacggaggtagtat 9746230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 38027591 - 38027557
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||||||||||||||||||||||||||||||||||    
T  38027591 aaaagtgacaattaaaaaggaacggaggtagtata 38027557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 41813658 - 41813620
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatatga 67  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  41813658 caaaagtaacaattaaaaaggaacggaggtagtatatga 41813620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 49089134 - 49089166
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  49089134 aaaagtgacaattaaaaaggaacggaggtagta 49089166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 1180917 - 1180882
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    |||||||||||||||||||||||||||| |||||||    
T  1180917 aaaagtgacaattaaaaaggaacggagggagtatat 1180882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 1146277 - 1146315
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatatga 67  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  1146277 caaaagtgacaattaaaaaggaacggatggagtatatga 1146315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 1181130 - 1181164
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||||||||||||||||||||||| ||||||    
T  1181130 caaaagtgacaattaaaaaggaacggagatagtat 1181164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 37551684 - 37551650
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||||| |||||||||    
T  37551684 tcaaaagtgacaattaaaaaggaactgaggtagta 37551650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Original strand, 37551893 - 37551927
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||| |||||    
T  37551893 caaaagtgacaattaaaaaggaacggagggagtat 37551927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 41813871 - 41813909
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtatatg 66  Q
    |||||||||||||||||||||||||||| | ||||||||    
T  41813871 tcaaaagtgacaattaaaaaggaacggatggagtatatg 41813909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 43887998 - 43887964
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||||||||||||||||||||||||||| ||||||    
T  43887998 aaaagtgacaattaaaaaggaacggagggagtata 43887964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 45725764 - 45725798
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  45725764 aaaaatgacaattaaaaaggaacggaggtagtata 45725798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Complemental strand, 56576116 - 56576086
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtata 64  Q
    |||||||||||||||||||||||||||||||    
T  56576116 gtgacaattaaaaaggaacggaggtagtata 56576086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 9220057 - 9220024
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||| ||||||||||||||    
T  9220057 aaaagtgacaattaaaaagaaacggaggtagtat 9220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 22828413 - 22828384
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  22828413 gtgacaattaaaaaggaacggaggtagtat 22828384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 38009778 - 38009749
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  38009778 gtgacaattaaaaaggaacggaggtagtat 38009749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 38617321 - 38617292
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  38617321 gtgacaattaaaaaggaacggaggtagtat 38617292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 53691883 - 53691916
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||| ||||||    
T  53691883 aaaagtgacaattaaaaaggaacggagatagtat 53691916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 354198 - 354226
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  354198 gtgacaattaaaaaggaacggaggtagta 354226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 6195252 - 6195284
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||| |||||||||    
T  6195252 aaaagtgacaattaaaaaggaacagaggtagta 6195284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 8735621 - 8735649
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  8735621 gtgacaattaaaaaggaacggaggtagta 8735649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 9834512 - 9834540
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  9834512 gtgacaattaaaaaggaacggaggtagta 9834540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 23621605 - 23621577
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  23621605 gtgacaattaaaaaggaacggaggtagta 23621577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 30939388 - 30939416
Alignment:
Q  35 tgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||||||||||||||||||||||||    
T  30939388 tgacaattaaaaaggaacggaggtagtat 30939416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 33755043 - 33755015
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  33755043 gtgacaattaaaaaggaacggaggtagta 33755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 43888209 - 43888241
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||| ||||||||    
T  43888209 aaaagtgacaattaaaaaggaacgaaggtagta 43888241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 44013925 - 44013897
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  44013925 gtgacaattaaaaaggaacggaggtagta 44013897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 44217938 - 44217966
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  44217938 gtgacaattaaaaaggaacggaggtagta 44217966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 53599798 - 53599770
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  53599798 gtgacaattaaaaaggaacggaggtagta 53599770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 55935335 - 55935367
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||| ||||||||||||||||||||||    
T  55935335 aaaagtgacagttaaaaaggaacggaggtagta 55935367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 32348200 - 32348234
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||||    
T  32348200 tcaaaagtgacaattaaaaaggaacggaggtagta 32348234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 32168324 - 32168292
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  32168324 aaaagtgacaattaaaaaggaacggaggtagta 32168292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 36318577 - 36318609
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  36318577 aaaagtgacaattaaaaaggaacggaggtagta 36318609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 51613636 - 51613668
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  51613636 aaaagtgacaattaaaaaggaacggaggtagta 51613668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 18033834 - 18033803
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  18033834 gtgacaattaaaaaggaacggaggtagtatat 18033803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 32168537 - 32168571
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||||||||||||||||||||||||||| ||||||    
T  32168537 aaaagtgacaattaaaaaggaacggagggagtata 32168571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 29830982 - 29831011
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  29830982 gtgacaattaaaaaggaacggaggtagtat 29831011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 30686640 - 30686669
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  30686640 gtgacaattaaaaaggaacggaggtagtat 30686669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 35531303 - 35531274
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  35531303 gtgacaattaaaaaggaacggaggtagtat 35531274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 51974183 - 51974154
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggta 59  Q
    ||||||||||||||||||||||||||||||    
T  51974183 aaaagtgacaattaaaaaggaacggaggta 51974154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 1024785 - 1024813
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  1024785 gtgacaattaaaaaggaacggaggtagta 1024813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 12231079 - 12231051
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  12231079 gtgacaattaaaaaggaacggaggtagta 12231051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 12721665 - 12721697
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||| |||||||||    
T  12721665 aaaagtgacaattaaaaaggaacagaggtagta 12721697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 13566908 - 13566936
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  13566908 gtgacaattaaaaaggaacggaggtagta 13566936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 18344551 - 18344583
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||| ||||||||||||||    
T  18344551 aaaagtgacaattaaaaatgaacggaggtagta 18344583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 37735151 - 37735119
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||| ||||||||||||||||||||||||    
T  37735151 aaaagtgataattaaaaaggaacggaggtagta 37735119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 43500735 - 43500763
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  43500735 gtgacaattaaaaaggaacggaggtagta 43500763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 52649741 - 52649713
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggt 58  Q
    |||||||||||||||||||||||||||||    
T  52649741 aaaagtgacaattaaaaaggaacggaggt 52649713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 147143 - 147110
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||||||    
T  147143 aaaagtgacaattaaaaaggaacggaggtagtat 147110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 96079 - 96042
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    |||||||||||||||||||||||||||||| |||||||    
T  96079 tcaaaagtgacaattaaaaaggaacggagggagtatat 96042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 11163489 - 11163526
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    |||||||||||||||||||||||||||||| |||||||    
T  11163489 tcaaaagtgacaattaaaaaggaacggagggagtatat 11163526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 14061164 - 14061131
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||||||    
T  14061164 aaaagtgacaattaaaaaggaacggaggtagtat 14061131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 38482803 - 38482770
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatatga 67  Q
    ||||||||||||||||||||||||||||||||||    
T  38482803 gtgacaattaaaaaggaacggaggtagtatatga 38482770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 3720905 - 3720940
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3720905 aaaagtgacaattaaaaaggaacggagatagtatat 3720940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 60
Target Start/End: Complemental strand, 38074289 - 38074258
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtag 60  Q
    ||||||||||||||||||||||||||||||||    
T  38074289 caaaagtgacaattaaaaaggaacggaggtag 38074258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 3720694 - 3720660
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||| ||||    
T  3720694 tcaaaagtgacaattaaaaaggaacggagggagta 3720660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 17718516 - 17718482
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||| |||||    
T  17718516 caaaagtgacaattaaaaaggaacggagggagtat 17718482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 167492 - 167459
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||| ||||||||||    
T  167492 aaaagtgacaattaaaaaggaacagaggtagtat 167459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 2888479 - 2888450
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  2888479 gtgacaattaaaaaggaacggaggtagtat 2888450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 15596573 - 15596602
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  15596573 gtgacaattaaaaaggaacggaggtagtat 15596602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 18291692 - 18291721
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  18291692 gtgacaattaaaaaggaacggaggtagtat 18291721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 23848783 - 23848816
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||| ||||||||||||||||||||||    
T  23848783 caaaagtgacacttaaaaaggaacggaggtagta 23848816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 7483967 - 7483999
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||| ||||||||||||||||||||||    
T  7483967 aaaagtgacagttaaaaaggaacggaggtagta 7483999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 8453247 - 8453219
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  8453247 gtgacaattaaaaaggaacggaggtagta 8453219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 18842758 - 18842786
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  18842758 gtgacaattaaaaaggaacggaggtagta 18842786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 23429922 - 23429886
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  23429922 caaaagtgacacttaaaaaggaacggagggagtatat 23429886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 26740152 - 26740120
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||| ||||||||    
T  26740152 aaaagtgacaattaaaaaggaacgaaggtagta 26740120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 34982058 - 34982086
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  34982058 gtgacaattaaaaaggaacggaggtagta 34982086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 35029771 - 35029803
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||| ||||||||||||||||||||||||||||    
T  35029771 aaaaatgacaattaaaaaggaacggaggtagta 35029803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 35052282 - 35052310
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  35052282 gtgacaattaaaaaggaacggaggtagta 35052310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 35296269 - 35296301
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||| ||||||||||||||||||||||    
T  35296269 aaaagtgacagttaaaaaggaacggaggtagta 35296301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 36111957 - 36111925
Alignment:
Q  31 aaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||| |||||||||||||||||||||||    
T  36111957 aaagtgacagttaaaaaggaacggaggtagtat 36111925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 41701497 - 41701465
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||| ||||||||||||||||||||||    
T  41701497 aaaagtgacagttaaaaaggaacggaggtagta 41701465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 18437335 - 18437302
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||||||    
T  18437335 aaaagtgacaattaaaaaggaacggaggtagtat 18437302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 4427417 - 4427385
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  4427417 aaaagtgacaattaaaaaggaacggaggtagta 4427385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 6008092 - 6008124
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||||||    
T  6008092 aaaagtgacaattaaaaaggaacggaggtagta 6008124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 9127359 - 9127328
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  9127359 gtgacaattaaaaaggaacggaggtagtatat 9127328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 25785899 - 25785868
Alignment:
Q  32 aagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||||    
T  25785899 aagtgacaattaaaaaggaacggaggtagtat 25785868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Original strand, 39073255 - 39073286
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  39073255 gtgacaattaaaaaggaacggaggtagtatat 39073286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 3818193 - 3818159
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||| |||||||||||||||||||||||||    
T  3818193 tcaaaagtggcaattaaaaaggaacggaggtagta 3818159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 4609230 - 4609264
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||| ||||    
T  4609230 tcaaaagtgacaattaaaaaggaacggagggagta 4609264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 8229818 - 8229784
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||| ||||||||    
T  8229818 tcaaaagtgacaattaaaaaggaacgaaggtagta 8229784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 21157838 - 21157872
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||| ||||    
T  21157838 tcaaaagtgacaattaaaaaggaacggagggagta 21157872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 42394351 - 42394389
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtatatg 66  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  42394351 tcaaaagtgacacttaaaaaggaacggagggagtatatg 42394389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 4175488 - 4175459
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  4175488 gtgacaattaaaaaggaacggaggtagtat 4175459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 7579675 - 7579646
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  7579675 gtgacaattaaaaaggaacggaggtagtat 7579646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 16124268 - 16124239
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  16124268 gtgacaattaaaaaggaacggaggtagtat 16124239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 18392985 - 18392956
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggagg 57  Q
    ||||||||||||||||||||||||||||||    
T  18392985 tcaaaagtgacaattaaaaaggaacggagg 18392956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 18676428 - 18676399
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggagg 57  Q
    ||||||||||||||||||||||||||||||    
T  18676428 tcaaaagtgacaattaaaaaggaacggagg 18676399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 18676637 - 18676670
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||||||||| ||||    
T  18676637 caaaagtgacaattaaaaaggaacggaggaagta 18676670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 31803531 - 31803564
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||||||||||||| |||||||||||||||    
T  31803531 aaaagtgacaattaaaaaagaacggaggtagtat 31803564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 1795341 - 1795377
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  1795341 caaaagtgacacttaaaaaggaacggagggagtatat 1795377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 2673986 - 2673958
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  2673986 gtgacaattaaaaaggaacggaggtagta 2673958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 4609019 - 4608983
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  4609019 caaaagtgacaattaaaaaggaatggagggagtatat 4608983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 4985183 - 4985155
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  4985183 gtgacaattaaaaaggaacggaggtagta 4985155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 13703304 - 13703336
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||||||| |||||    
T  13703304 aaaagtgacaattaaaaaggaacggagatagta 13703336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 21150487 - 21150459
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggagg 57  Q
    |||||||||||||||||||||||||||||    
T  21150487 caaaagtgacaattaaaaaggaacggagg 21150459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 21157628 - 21157600
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggagg 57  Q
    |||||||||||||||||||||||||||||    
T  21157628 caaaagtgacaattaaaaaggaacggagg 21157600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 25344171 - 25344199
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  25344171 gtgacaattaaaaaggaacggaggtagta 25344199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 37809966 - 37809998
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||| |||||||||||    
T  37809966 aaaagtgacaattaaaaaggatcggaggtagta 37809998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 38910484 - 38910512
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  38910484 gtgacaattaaaaaggaacggaggtagta 38910512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 39893821 - 39893789
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||| ||||||    
T  39893821 aaaagtgacaattaaaaaggaacggatgtagta 39893789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 41351214 - 41351182
Alignment:
Q  31 aaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||||||||||||||||||||||||||||    
T  41351214 aaagtgacaattaaaaaggaacggaggtagtat 41351182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 2642925 - 2642959
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||| ||||    
T  2642925 tcaaaagtgacaattaaaaaggaacggagggagta 2642959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 23771300 - 23771266
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||| |||||    
T  23771300 caaaagtgacaattaaaaaggaacggaggaagtat 23771266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 20105205 - 20105172
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||| ||||||||||||||||||||||    
T  20105205 caaaagtgacacttaaaaaggaacggaggtagta 20105172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 40139859 - 40139830
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  40139859 gtgacaattaaaaaggaacggaggtagtat 40139830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Complemental strand, 51219110 - 51219081
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  51219110 gtgacaattaaaaaggaacggaggtagtat 51219081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 2858594 - 2858566
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  2858594 gtgacaattaaaaaggaacggaggtagta 2858566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 20105402 - 20105430
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  20105402 gtgacaattaaaaaggaacggaggtagta 20105430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 29803877 - 29803905
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  29803877 gtgacaattaaaaaggaacggaggtagta 29803905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 33491156 - 33491128
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  33491156 gtgacaattaaaaaggaacggaggtagta 33491128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 33874567 - 33874535
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||| ||||||||||||||||||||||||||||    
T  33874567 aaaaatgacaattaaaaaggaacggaggtagta 33874535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 41425858 - 41425886
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  41425858 gtgacaattaaaaaggaacggaggtagta 41425886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 41926905 - 41926937
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||| |||||||||    
T  41926905 aaaagtgacaattaaaaaggaacagaggtagta 41926937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 44092263 - 44092295
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||| |||||||||    
T  44092263 aaaagtgacaattaaaaaggaacagaggtagta 44092295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 45101375 - 45101347
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  45101375 gtgacaattaaaaaggaacggaggtagta 45101347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 47104389 - 47104421
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||| ||||    
T  47104389 aaaagtgacaattaaaaaggaacggagggagta 47104421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 252817 - 252852
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||||||||||||||||||||||||| |||||    
T  252817 tcaaaagtgacaattaaaaaggaacggagggagtat 252852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 252607 - 252574
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||||||||| ||||    
T  252607 caaaagtgacaattaaaaaggaacggagggagta 252574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 11222330 - 11222299
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||||||||||||||||    
T  11222330 gtgacaattaaaaaggaacggaggtagtatat 11222299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 65
Target Start/End: Complemental strand, 35158369 - 35158334
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    ||||||||||||||||||| ||||||||||||||||    
T  35158369 aaaagtgacaattaaaaagaaacggaggtagtatat 35158334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 13754178 - 13754212
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||| ||||||    
T  13754178 tcaaaagtgacaattaaaaaggaacggaagtagta 13754212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Original strand, 13965832 - 13965862
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtag 60  Q
    |||||||||||||||||||||||||||||||    
T  13965832 aaaagtgacaattaaaaaggaacggaggtag 13965862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 34262840 - 34262806
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtata 64  Q
    |||| ||||||||||||||||||||||||||||||    
T  34262840 aaaattgacaattaaaaaggaacggaggtagtata 34262806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 10812428 - 10812457
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  10812428 gtgacaattaaaaaggaacggaggtagtat 10812457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 13215618 - 13215651
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||| |||||||||||||||||||||||||||    
T  13215618 aaaagtaacaattaaaaaggaacggaggtagtat 13215651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 19594579 - 19594612
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtatatga 67  Q
    ||||||||||||||| ||||||||||||||||||    
T  19594579 gtgacaattaaaaagtaacggaggtagtatatga 19594612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 26342809 - 26342838
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  26342809 gtgacaattaaaaaggaacggaggtagtat 26342838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 34357407 - 34357436
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  34357407 gtgacaattaaaaaggaacggaggtagtat 34357436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 36375802 - 36375831
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  36375802 gtgacaattaaaaaggaacggaggtagtat 36375831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 37077184 - 37077147
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagtatat 65  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  37077184 tcaaaagtgacaattaaaaatgaacggaggtggtatat 37077147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 8443903 - 8443935
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||| |||||||||    
T  8443903 aaaagtgacaattaaaaaggaacagaggtagta 8443935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 9707012 - 9707044
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    ||||||||||||||||||||||||| |||||||    
T  9707012 aaaagtgacaattaaaaaggaacgggggtagta 9707044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 13849733 - 13849701
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||| ||||||||||||||||||||||||||||    
T  13849733 aaaaatgacaattaaaaaggaacggaggtagta 13849701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 15183015 - 15182987
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  15183015 gtgacaattaaaaaggaacggaggtagta 15182987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 15893594 - 15893566
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  15893594 gtgacaattaaaaaggaacggaggtagta 15893566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 19594363 - 19594331
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||| ||||    
T  19594363 aaaagtgacaattaaaaaggaacggagggagta 19594331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 32854800 - 32854768
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||| ||||||||||||||||||||||    
T  32854800 aaaagtgacagttaaaaaggaacggaggtagta 32854768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 62
Target Start/End: Original strand, 44360662 - 44360690
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||    
T  44360662 gtgacaattaaaaaggaacggaggtagta 44360690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 62
Target Start/End: Original strand, 23360 - 23394
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||||| ||||    
T  23360 tcaaaagtgacaattaaaaaggaacggagggagta 23394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2146 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2146
Description:

Target: scaffold2146; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 777 - 810
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    |||||||| |||||||||||||||||||||||||    
T  777 aaaagtgaaaattaaaaaggaacggaggtagtat 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 8383 - 8412
Alignment:
Q  34 gtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||||||||||||||    
T  8383 gtgacaattaaaaaggaacggaggtagtat 8412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 57
Target Start/End: Complemental strand, 14268 - 14239
Alignment:
Q  28 tcaaaagtgacaattaaaaaggaacggagg 57  Q
    ||||||||||||||||||||||||||||||    
T  14268 tcaaaagtgacaattaaaaaggaacggagg 14239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 30708 - 30675
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagtat 63  Q
    ||||||||||||||||||| ||||||||||||||    
T  30708 aaaagtgacaattaaaaagaaacggaggtagtat 30675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 184355 - 184396
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagtatatgagtg 70  Q
    ||||||||||| ||||||||||||||||| ||||||| ||||    
T  184355 caaaagtgacacttaaaaaggaacggagggagtatataagtg 184396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 4738 - 4770
Alignment:
Q  29 caaaagtgacaattaaaaaggaacggaggtagt 61  Q
    |||| ||||||||||||||||||||||||||||    
T  4738 caaatgtgacaattaaaaaggaacggaggtagt 4770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0831 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0831
Description:

Target: scaffold0831; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 3034 - 3066
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||||||| ||||    
T  3034 aaaagtgacaattaaaaaggaacggagggagta 3066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 7649 - 7681
Alignment:
Q  30 aaaagtgacaattaaaaaggaacggaggtagta 62  Q
    |||||||||||||||||||||||| ||||||||    
T  7649 aaaagtgacaattaaaaaggaacgaaggtagta 7681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University