View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20852_high_5 (Length: 340)
Name: NF20852_high_5
Description: NF20852
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20852_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 38 - 333
Target Start/End: Complemental strand, 33751104 - 33750813
Alignment:
| Q |
38 |
gtagttgaagcaagaaagacactagctagctgcacattgcacagcaaaattctacatagcagattcttctgcaaaaacaaaaattgaaatcacgatttgc |
137 |
Q |
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| T |
33751104 |
gtagttgaagcaagaaagacactagct----gcacattgcacagcaaaattctacatagcagattcttctgcaaaaacaaaaattgaaatcacgatttgc |
33751009 |
T |
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| Q |
138 |
acttgcagctggcaaggcgacttcctcctccgaaaaaatctagtggaagaaagattatgcacattgttgcaaagcgaagctaatcaataccttaacctcg |
237 |
Q |
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| T |
33751008 |
acttgcagctggcatggtaacttcctcctccgaaaaaatctagtggaagaaagattatgcacattgttgcaaagcgaagctaatcaataccttaacctcg |
33750909 |
T |
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| Q |
238 |
gtcaaacacgcactaatttacacaagtaactgttccattgttgttgagttcaggaactaattaaaagtgttcccagttctggaatcagaataatct |
333 |
Q |
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| T |
33750908 |
gtcaaacacgcactaatttacacaagtaactgttccattgttgttgagttcaggaactaattaaaagtgttcccagttctggaatcagaagaatct |
33750813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 227
Target Start/End: Complemental strand, 33719578 - 33719443
Alignment:
| Q |
85 |
aattctacatagcagattcttctgcaaaaacaaaaattgaaatcacgatttgcacttgcagctggcaaggcgacttcct-cctccgaaaaaatctagtgg |
183 |
Q |
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| T |
33719578 |
aattctacaaagcggattcttcttcaaaatcaaacattgaaatcactatttgcacttgcag-----aaagcaacttcctccctaaaaaaaaatctcgtag |
33719484 |
T |
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| Q |
184 |
aagaaagattatgcacattgttgcaaagcgaagctaatcaatac |
227 |
Q |
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| T |
33719483 |
aagagagattatgcaca---ttgcacagcaaagctaatcaatac |
33719443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 33721392 - 33721324
Alignment:
| Q |
264 |
taactgttccattgttgttgagttcaggaactaattaaaagtgttcccagttctggaatcagaataatc |
332 |
Q |
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||||||||| |||||||||| || |||||||||||||||||||| || ||||| |||| |||| |||| |
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| T |
33721392 |
taactgttctgttgttgttgaattgaggaactaattaaaagtgtttcctgttctagaatgagaagaatc |
33721324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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