View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_1 (Length: 629)
Name: NF20853_high_1
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 330 - 618
Target Start/End: Original strand, 9499594 - 9499882
Alignment:
| Q |
330 |
ggtctctgccacggtagttggttgcaccgattttgggtagctaaatgtagccgctgcccaacacatccaaggagtgatgcgtgaccgttatttcatcagg |
429 |
Q |
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| T |
9499594 |
ggtctctgccacggtagttggttgcactgattttgggtagctaaatgtagccgctgtccaatgcatccaaggagtggtgcgtgaccgttatttcatcagg |
9499693 |
T |
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| Q |
430 |
catgtaaaatggggaattacttccccacttctgcatgacccacctatggtgtcctatcatttttgtggatcccccactcctctaagggtttgaaccaaag |
529 |
Q |
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| T |
9499694 |
catgtaaaatggggaattacttccccatttctgcatgacccacctatggtgtcctatcatttttgtggatcccccactcctctaagggtttgaaccaaag |
9499793 |
T |
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| Q |
530 |
cctctcccatcaccaacccccactttttatgaaggccttattccactccaccatttgttgcctactttcaatttctgtacatggtctgt |
618 |
Q |
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| T |
9499794 |
cctctcccatcaccaacccccactttttatgaaggccttattccactccaccatttgttgcctactttcaatttctgtacatggtctgt |
9499882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 9499330 - 9499596
Alignment:
| Q |
30 |
aaaatagcccaatgctatatttatacattgcatgattttaagttggatgatgttttcttataattcagccgcatgctcccctactttttagtaaacatat |
129 |
Q |
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| T |
9499330 |
aaaatagcccaatgctatatttatacattgcatgattttaagttggatgatgttttcttataattcagccgcatgctcccctactttttagtaaacatat |
9499429 |
T |
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| Q |
130 |
cctgagaaattggattagaccatcacaaaaccattgttttatggtgattttatccccataagaaattgggttaaaagcagcaaaatccggtgttggaact |
229 |
Q |
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| T |
9499430 |
ctttagaaattggattagaccatcacaaaaccattgttttatggtgattttatccccataagaaattgggttaaaagcagcaaaatccagcgttggaact |
9499529 |
T |
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| Q |
230 |
gttcagacccaacagactgcaaataattctaagtgaaacagctgtgtttagatttaccgtatttggt |
296 |
Q |
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| T |
9499530 |
gttcagacccaacagactgcaaataattctaagtgaaacagctgtgtttagatttaccgtatttggt |
9499596 |
T |
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