View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_10 (Length: 352)
Name: NF20853_high_10
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 13111970 - 13112284
Alignment:
| Q |
14 |
attctcagaaacggcaagtggtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaata-----ctaaacgctgcttaca |
108 |
Q |
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| T |
13111970 |
attctcagaaacggcaagtggtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaatatactactaaacgctgtttaca |
13112069 |
T |
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| Q |
109 |
tcagaaaatttctttatttttaatattcattccttctatttataatacttgatcttctttgctactaattagaagtactcaattctctaaaatcaaaaca |
208 |
Q |
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| T |
13112070 |
tcagaaaatttctttatttttaatattcattccttctatttataatacttgatcttctttgctactaattagaagttctcaattctctaaaatcaaaata |
13112169 |
T |
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| Q |
209 |
gggtaaaacatgtgttactgtaaagctgccatcatgtacacattcaatttttctaagcttatgccataattaatagttcaataccatccagtgataggtt |
308 |
Q |
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| T |
13112170 |
gggtaaaacatgtgttactgtaaagctgccatcatgtacacattcaatttttctaagcttatgccataattaatagttcaataccatccagtgataggtt |
13112269 |
T |
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| Q |
309 |
gaaccctttttactg |
323 |
Q |
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| T |
13112270 |
gaaccctttttactg |
13112284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 134 - 295
Target Start/End: Original strand, 14516025 - 14516187
Alignment:
| Q |
134 |
ttcattccttctatttataatacttgatcttctttgctactaattagaagtactcaattctctaaaatcaaaacagggtaaaacatgtgttactgtaaag |
233 |
Q |
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| T |
14516025 |
ttcattccttctatttacaaaacttaatcttatttgctactgtttagaagttctcaactctctaaaatcaaaatatggtaacacatgtgtcattgtaaag |
14516124 |
T |
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| Q |
234 |
ctgccatcatgtacacattcaatttttctaagcttatgccataattaatagttc-aataccat |
295 |
Q |
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| T |
14516125 |
ctgtcatcatgtacacatgcaagttttctaagcttataccacaattaatagttctaataccat |
14516187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 14515861 - 14515776
Alignment:
| Q |
34 |
gtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaatactaaacgctgcttacatcagaaaattt |
119 |
Q |
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| T |
14515861 |
gtttaggtgctaaaatgctgctaagtggtgcttgctaaagcatgcagcattcatcaacgctaaatgttgcttacataagaaaattt |
14515776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 323
Target Start/End: Complemental strand, 18513612 - 18513426
Alignment:
| Q |
134 |
ttcattccttctatttataatacttgatcttctttgctactaattagaagtactcaattctctaaaatcaaaacagggtaaaacatgtgttactgtaaag |
233 |
Q |
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||||||||||||||||| || ||||||||| |||||| ||||||||| |||||| || |||||| ||| ||||||| | |||||||||| ||| | |
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| T |
18513612 |
ttcattccttctatttacaaatcttgatcttatttgctg---attagaagttctcaatcatcaaaaatcgaaatagggtaacatatgtgttactctaagg |
18513516 |
T |
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| Q |
234 |
ctgccatcatgtacacattcaatttttctaagcttatgccataattaatagttcaataccatccagtgataggttgaaccctttttactg |
323 |
Q |
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| T |
18513515 |
ctgtcatcatgtacacatgcaatttttctaagcttatgctacaattaatagttcaataccatgcattgatagattgcaccatttttactg |
18513426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 18513750 - 18513671
Alignment:
| Q |
34 |
gtttaggtgctaaaatgctgctaagtggtgcttgctgaagcgctcaactttcattaatactaaacgctgcttacatcagaaaatttct |
121 |
Q |
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| T |
18513750 |
gtttaggtgctaaaatgttgctaagtcgtgtttgctgaagcg--------ttattaacactaaatgttgcttacatcagaaaatttct |
18513671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 6953984 - 6953948
Alignment:
| Q |
255 |
atttttctaagcttatgccataattaatagttcaata |
291 |
Q |
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| T |
6953984 |
atttttctaagctcataccataattaatagttcaata |
6953948 |
T |
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