View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20853_high_12 (Length: 334)

Name: NF20853_high_12
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20853_high_12
NF20853_high_12
[»] chr3 (7 HSPs)
chr3 (116-326)||(43616161-43616371)
chr3 (199-326)||(43609698-43609826)
chr3 (199-326)||(43603290-43603417)
chr3 (118-188)||(42914485-42914555)
chr3 (76-114)||(29438417-29438455)
chr3 (76-116)||(43615840-43615880)
chr3 (116-187)||(29313137-29313208)
[»] chr2 (2 HSPs)
chr2 (116-187)||(32532765-32532836)
chr2 (116-164)||(12287972-12288020)
[»] chr5 (5 HSPs)
chr5 (116-187)||(4870217-4870288)
chr5 (116-187)||(3631947-3632018)
chr5 (116-158)||(13106135-13106177)
chr5 (116-187)||(2977233-2977304)
chr5 (116-158)||(13036145-13036187)
[»] chr8 (2 HSPs)
chr8 (116-188)||(33285070-33285142)
chr8 (76-116)||(25430942-25430982)
[»] chr7 (4 HSPs)
chr7 (76-117)||(31642754-31642795)
chr7 (76-116)||(44598579-44598619)
chr7 (79-116)||(9698211-9698248)
chr7 (116-159)||(23705386-23705429)
[»] chr4 (1 HSPs)
chr4 (79-116)||(13564588-13564625)
[»] chr1 (4 HSPs)
chr1 (79-116)||(171039-171076)
chr1 (76-116)||(52453836-52453876)
chr1 (116-187)||(46906000-46906071)
chr1 (131-164)||(26673786-26673819)
[»] chr6 (1 HSPs)
chr6 (76-116)||(14533644-14533684)


Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 116 - 326
Target Start/End: Original strand, 43616161 - 43616371
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaatcgggtcaatgatcctactttgttgttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43616161 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaagaattgagaggaccttgaattaatcgggtctatgatcctactttgttgttt 43616260  T
Q  216 ttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactgtcttccggcttcaacat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616261 ttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactgtcttccggcttcaacat 43616360  T
Q  316 tcttctctgct 326  Q
    |||||| ||||    
T  43616361 tcttctttgct 43616371  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 43609698 - 43609826
Alignment:
Q  199 atcctactttgttg-tttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaact 297  Q
    ||||||||| |||| ||||||||| ||||||||||| |||||||| ||||| |||||||| |||| || ||||||||| || ||| |||||||||||| |    
T  43609698 atcctacttggttgctttttcagacttactttaactctgaatgtgcatggtgttgctctttcttatacttctgctatgctgtctggtgcaattgttaatt 43609797  T
Q  298 gtcttccggcttcaacattcttctctgct 326  Q
    ||||||||||||| |||||||||| ||||    
T  43609798 gtcttccggcttcgacattcttctttgct 43609826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 199 - 326
Target Start/End: Original strand, 43603290 - 43603417
Alignment:
Q  199 atcctactttgttgtttttcagaattactttaactttgaatgtgaatggtattgctcttgcttacacgtctgctatgttggctgctgcaattgttaactg 298  Q
    ||||| ||| |||| ||||||||||||||||| || |||||||| |||||||||| |||| |||||| ||||||  |||||||||||| |||||||| ||    
T  43603290 atccttcttggttgcttttcagaattactttagctctgaatgtgcatggtattgcccttgtttacacttctgcttcgttggctgctgctattgttaattg 43603389  T
Q  299 tcttccggcttcaacattcttctctgct 326  Q
     ||||| ||||  |||||||||| ||||    
T  43603390 ccttcctgcttgtacattcttctttgct 43603417  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 42914555 - 42914485
Alignment:
Q  118 taaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaat 188  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||  |||  ||||| |||||||||||    
T  42914555 taaggagatcattgatatttctaatgatagttgcataaacatgtcaagcattaggaggagcttgaattaat 42914485  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 29438417 - 29438455
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaa 114  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  29438417 acttgtttaatcttctattattgcatattgtatttaaaa 29438455  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 43615840 - 43615880
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  43615840 acttgtttaatcttctattattcaatatcgtatttaaaaaa 43615880  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 29313208 - 29313137
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 187  Q
    |||||||||||| || |||||||| |||||||| ||||||||||| |||  ||| || ||| ||||||||||    
T  29313208 attaaggagatccttaatatttctgatgatagtggcataaacatgtcaagcattaaggggagcttgaattaa 29313137  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 32532765 - 32532836
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 187  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||    
T  32532765 attaaggagatcattgatatttctaatgatagttgcataaacatgccaagagttgagaggagcttgaattaa 32532836  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 12287972 - 12288020
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaa 164  Q
    |||||||||||| |  | ||||||||||||||| |||||||||||||||    
T  12287972 attaaggagatcttcaacatttctaatgatagtggcataaacatgccaa 12288020  T

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Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 4870217 - 4870288
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 187  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||||    
T  4870217 attaaggagattgttgatatttctaatgatagttgcataaacatgtcaagcattgagaggagcttgaattaa 4870288  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 3631947 - 3632018
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 187  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||  |||||||||  ||||||||||    
T  3631947 attaaggagatcgttgatgtttctaatgatagttgcataaacatgtcaaacattgagaggggcttgaattaa 3632018  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 13106135 - 13106177
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaaca 158  Q
    ||||||||||||||| ||||||||||||||| |||||||||||    
T  13106135 attaaggagatcgttaatatttctaatgataattgcataaaca 13106177  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 2977304 - 2977233
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 187  Q
    |||||||||||| |||| |||| | | |||||| ||||||| |||||||  |||||||||| ||||||||||    
T  2977304 attaaggagatccttgacattttttacgatagtggcataaaaatgccaagcattgagaggaacttgaattaa 2977233  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 13036145 - 13036187
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaaca 158  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  13036145 attaaggagatcgttaatatttttaatgatagttgtataaaca 13036187  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 33285142 - 33285070
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaat 188  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||  |||| ||||| ||| |||||||    
T  33285142 attaagcagatcgttgatatttctaatgatagttgcataaacatgtcaagcattgggaggagcttaaattaat 33285070  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 25430942 - 25430982
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  25430942 acttgtttaatcttctattattgcatattgtattaaaaaaa 25430982  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 31642754 - 31642795
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaaaat 117  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  31642754 acttgtttaatcttctattattgcatattgtatttaaaaaat 31642795  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 44598579 - 44598619
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  44598579 acttgtttaatcttctattattgcatattgtatttaaaaaa 44598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 9698248 - 9698211
Alignment:
Q  79 tgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9698248 tgtttaatcttctattattgcatattgtatttaaaaaa 9698211  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 23705386 - 23705429
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacat 159  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||    
T  23705386 attaaagagatcattgatatttctattgatagttgcataaacat 23705429  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 13564625 - 13564588
Alignment:
Q  79 tgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13564625 tgtttaatcttctattattgcatattgtatttaaaaaa 13564588  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 171039 - 171076
Alignment:
Q  79 tgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  171039 tgtttaatcttctattattgcatattgtatttaaaaaa 171076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 52453876 - 52453836
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  52453876 acttgtttaatcttctattatagcatattgtatttaaaaaa 52453836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 46906071 - 46906000
Alignment:
Q  116 attaaggagatcgttgatatttctaatgatagttgcataaacatgccaacaattgagaggaccttgaattaa 187  Q
    |||||||||||| || | |||||| ||| |||| ||||||||||||||| ||||||| ||  ||||||||||    
T  46906071 attaaggagatccttaacatttctgatggtagtggcataaacatgccaagaattgaggggggcttgaattaa 46906000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 26673819 - 26673786
Alignment:
Q  131 gatatttctaatgatagttgcataaacatgccaa 164  Q
    ||||||||||||| ||||||||||||||||||||    
T  26673819 gatatttctaatgttagttgcataaacatgccaa 26673786  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 14533644 - 14533684
Alignment:
Q  76 acttgtttaatcttctattattgcatatcgtatttaaaaaa 116  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  14533644 acttgtttaatcttctattgttgcatattgtatttaaaaaa 14533684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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