View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_15 (Length: 328)
Name: NF20853_high_15
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 42995507 - 42995792
Alignment:
| Q |
11 |
caaaggacctatcacataaattaacacaaacatgctagtaacaa-tgaaaaccaagcctcatcaaggctcttagtgtttaatgaagtgctgctagaggca |
109 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
42995507 |
caaaggacctatcacataaattaacacaaacatgttagtgacaaatgaaaaccaagcctcatcaagcctcttagtgtttaatgaagtgctgctagaagca |
42995606 |
T |
|
| Q |
110 |
gctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacggcgagcggcgttgacagtttataaccttcccaaacctgtctttc |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
42995607 |
gctttgtctgtcgcagcattatgtttcttcacggtttcgatatcggcaccggcacggcgagcggcgttgacaatatataaacttcccaaacctgtctttc |
42995706 |
T |
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| Q |
210 |
aaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtataccataaaaatctctcagagcctt |
295 |
Q |
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| T |
42995707 |
aaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtatgccataaaaatctctcagagcctt |
42995792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 31042706 - 31042652
Alignment:
| Q |
77 |
ctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattat |
131 |
Q |
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| T |
31042706 |
ctcttagtgttcaatgaagtgctgctagatgcagctttgtttgttgcagcattat |
31042652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 78 - 292
Target Start/End: Original strand, 27354341 - 27354555
Alignment:
| Q |
78 |
tcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacggcgagcggcgtt |
177 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
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| T |
27354341 |
tcttagtgtttaatgaagtgttgttagaggcagctttgtctgtcgcaacattatgtttcttcacggtttcaatatcggcaccggcacggcgagcggcgtt |
27354440 |
T |
|
| Q |
178 |
gacagtttataaccttcccaaacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtataccata |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27354441 |
gacagtttataaccttcccaaacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtattccata |
27354540 |
T |
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| Q |
278 |
aaaatctctcagagc |
292 |
Q |
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||||||||||||||| |
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| T |
27354541 |
aaaatctctcagagc |
27354555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 35378168 - 35378233
Alignment:
| Q |
66 |
cctcatcaaggctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattat |
131 |
Q |
| |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35378168 |
cctcatcaagcctcttagtgttcaatgaagtgctgctagaggcagctttgtttgtcgcagcattat |
35378233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 16982037 - 16981928
Alignment:
| Q |
186 |
ataaccttcccaaacctgtctttcaaaaccattgcaaattttcccaaaccaacaaacaccagggtgatccatgctcccagtcgtataccataaaaatctc |
285 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| || ||||| ||||||| |
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| T |
16982037 |
ataaccttcccaaacatgtccttcaaaaccattgcaaatttccccaaaccaacaaacatcagggtgatccatgctccaagtcgaatcccatagaaatctc |
16981938 |
T |
|
| Q |
286 |
tcagagcctt |
295 |
Q |
| |
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| |||||||| |
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| T |
16981937 |
tgagagcctt |
16981928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 48846172 - 48846286
Alignment:
| Q |
66 |
cctcatcaaggctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacg |
165 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| || |||||||| | ||| ||||| |||| ||||| |
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| T |
48846172 |
cctcatcaagcctcttagtgttcaatgaagtgctgctagaggaagctttgtttgtcgcaacatcat-tttcttcatggttttgatatcggcaccagcacg |
48846270 |
T |
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| Q |
166 |
gcgagcggcgttgaca |
181 |
Q |
| |
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||||||||| |||||| |
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| T |
48846271 |
gcgagcggcattgaca |
48846286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 7016344 - 7016232
Alignment:
| Q |
68 |
tcatcaaggctcttagtgtttaatgaagtgctgctagaggcagctttgtctgtcgcagcattatgtttcttcacgatttcaatatcagcactggcacggc |
167 |
Q |
| |
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|||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||||| ||| || |||||||| | ||| ||||| |||| ||||| || |
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| T |
7016344 |
tcatcaagcctcttagtgttcaatgaagtgctgctagaggaagctttgtttgtcgcaacatcat-tttcttcatggttttgatatcggcaccggcaccgc |
7016246 |
T |
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| Q |
168 |
gagcggcgttgaca |
181 |
Q |
| |
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|||| || |||||| |
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| T |
7016245 |
gagcagcattgaca |
7016232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 21005352 - 21005390
Alignment:
| Q |
186 |
ataaccttcccaaacctgtctttcaaaaccattgcaaat |
224 |
Q |
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|||||||||||||| ||||||||||||||||| |||||| |
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| T |
21005352 |
ataaccttcccaaatctgtctttcaaaaccatagcaaat |
21005390 |
T |
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