View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_16 (Length: 328)
Name: NF20853_high_16
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 29 - 317
Target Start/End: Original strand, 47970891 - 47971180
Alignment:
| Q |
29 |
atgaaagactactatttaggagtatgaatgaatgaaatcttaaataatgaggtgcttcttgttccttattccaa-tgatacagatcctgcaggtgtaggg |
127 |
Q |
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| T |
47970891 |
atgaaagactactatttaggagtatgaatgaatgaaatcttaaataatgaggtgcttcttgttccttattccaaatgatacagatcctgcaggtgtaggg |
47970990 |
T |
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| Q |
128 |
agaaggaatattgaatttgacagtgcttagttttctttctaaaatcaaaggatttcaagtcgacctacaccattaaatgttatcttcgaaacaacagtaa |
227 |
Q |
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| T |
47970991 |
agaaggaatattgaatttgacagtgcttagttttctttctaaaatcaaaggatttcaagtcgacctacacgattaaatgttatcttcgaaacaacagtaa |
47971090 |
T |
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| Q |
228 |
taatcagtagtaccttaaagcataaaattgaatgtcaaaatccatttttacatgaaattcactacacgaccaggttgctataaagtataa |
317 |
Q |
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| T |
47971091 |
taatcagtagtaccttaaagcataaaattgaatgtcaaaatccatttttacatgaaattcactacacgaccaggttgctataaagtataa |
47971180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 34 - 306
Target Start/End: Original strand, 52227724 - 52228003
Alignment:
| Q |
34 |
agactactatttaggagtatgaatgaatgaaatcttaaataatgaggtgcttcttgttccttattccaa-tgatacagatcctgcaggtgtagggagaag |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
52227724 |
agactactatttaggagtatgaatgaatgaaatcttaaataacgaggtgcttcttgttccttattccaaatgatatagatcctgcaggtgtagggagaag |
52227823 |
T |
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| Q |
133 |
gaatattgaatttgacagtgcttagttttctttctaaaatcaaaggatttcaagtcgacctacaccattaaatgttatcttcgaa--acaa----cagta |
226 |
Q |
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| T |
52227824 |
gattattgaatttgacagtgcttagttttctttctaaaatcaaaggatttcaagtcaacctacaccattaaatgttatctttgaatgtcaaaatccagta |
52227923 |
T |
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| Q |
227 |
ataatcagtagtaccttaaagcataaaattgaatgtcaaaatccatttttacatgaaattcactacacgaccaggttgct |
306 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52227924 |
ataatcagtagtaccttaaagcataaaattaaacgtcaaaatccatttttacatgaaattcactacacgaccaggttgct |
52228003 |
T |
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