View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20853_high_17 (Length: 327)
Name: NF20853_high_17
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 47652622 - 47652940
Alignment:
| Q |
1 |
acaccatgaaaagataaaagaagagtgtgtagatat--agtaagggaaagtggggaaagagtacaggttggcaaccatgtgaaaaagtttgttaagagaa |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47652622 |
acaccatgaaaagataaaagaagagtgtgtagatatatagtaagggaaagtggggaaagagtacaggttggcaaccatgtgaaaaagtttgttaagagaa |
47652721 |
T |
|
| Q |
99 |
tggggaaagaatagagaaagattcagagtagtagctactgtacatgtctctctgattgtgatgtattgtaatattggtgtttgcatgtccgtgatgggat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47652722 |
tggggaaagaatagagaaagattcagagtagtagctactgtacatgtctctctgattgtgatgtattgtaatattggtgtttgcatgtccgtgatgggat |
47652821 |
T |
|
| Q |
199 |
aaagactttataaagttttcttagtttttgtaattttgtatatccgtgaatgaactttccttcctttgatgtgatatcatatctcttattttcctttctt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47652822 |
aaagactttataaagttttcttagtttttgtaattttgtatatccgtgaatgaactttccttcctttgatgtgatatcatatctcttattttcctttctt |
47652921 |
T |
|
| Q |
299 |
tcaccacccaatttctgtg |
317 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
47652922 |
tcaccacccaatttctgtg |
47652940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University