View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_18 (Length: 319)
Name: NF20853_high_18
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_18 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: scaffold0076 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 47622 - 47900
Alignment:
| Q |
13 |
aaggcaatattccaaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47622 |
aaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcacagaagtcatgatatcgtgtcag |
47721 |
T |
|
| Q |
113 |
gtggtacctttctaacaatgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatactctttgttcgtcgtttat |
212 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
47722 |
gtggtacctttctaactctgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatactttttgttcgtcgtttat |
47821 |
T |
|
| Q |
213 |
gcgatatatgcactgtgatagagtgataattaatattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47822 |
gcgatatatgcactgtgatagagtgataattaatattctggagacaatagattggactttcatccttgattctattact |
47900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 20134244 - 20133973
Alignment:
| Q |
13 |
aaggcaatattccaaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20134244 |
aaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
20134145 |
T |
|
| Q |
113 |
gtggtacctttctaacaatgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatactctttgttcgtcgtttat |
212 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20134144 |
gtggtacctttctaactctgttattctccgtggatccttttgttaaaccgaattggactttggttttctgctattacaatactttttgttcgtcgtttat |
20134045 |
T |
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| Q |
213 |
gcgatatatgcactgtgatagagtgataattaatattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
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||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
20134044 |
gcgatatatgcactgtgatagagtgataattaatatt-------ctagagattggactttcatccttgattctattact |
20133973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 18974406 - 18974461
Alignment:
| Q |
236 |
tgataattaatattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
| |
|
||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
18974406 |
tgataatggatattttggagacaataggttggactttcatccttgattctattact |
18974461 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 44357827 - 44358098
Alignment:
| Q |
13 |
aaggcaatattccaaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
112 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44357827 |
aaggcaatattccgaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
44357926 |
T |
|
| Q |
113 |
gtggtacctttctaacaatgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatactctttgttcgtcgtttat |
212 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44357927 |
gtggtacctttctaactctgttattctccgtggatccttttgttaaaccgaattggactttggttttctgctattacaatactttttgttcgtcgtttat |
44358026 |
T |
|
| Q |
213 |
gcgatatatgcactgtgatagagtgataattaatattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
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||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |
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| T |
44358027 |
gcgatatatgcactgtgatagagtgataattaatatt-------ctagagattggactttcatccttgattctattact |
44358098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 5331457 - 5331411
Alignment:
| Q |
245 |
atattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
5331457 |
atattttggagacaataggttggactttcatccttgattctattact |
5331411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 12325444 - 12325643
Alignment:
| Q |
13 |
aaggcaatattccaaacttcgccaacaccgccgccgaggaatataggcggcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
112 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325444 |
aaggcaatattccgaacttcgccaacaccgc---cgaggaagataggcagcctagacgtatgaccacctaaacatcgcagaagtcatgatatcgtgtcag |
12325540 |
T |
|
| Q |
113 |
gtggtacctttctaacaatgttattctccgttgatccttttgttaaaccgaatcggactttggttttctgctattacaatactctttgttcgtcgtttat |
212 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | || |||||| ||||||||||| |||||||||||||| | |
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| T |
12325541 |
gtggtacctttctaactctgttattctccgttgatccttttgttaaaccgagtcggccattagttttc----attacaatactttttgttcgtcgtttgt |
12325636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 215 - 291
Target Start/End: Original strand, 12325718 - 12325794
Alignment:
| Q |
215 |
gatatatgcactgtgatagagtgataattaatattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
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|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325718 |
gatatatgcactgtgatagggtgataattaatattctggagacaatagattggactttcatccttgattctattact |
12325794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 11203439 - 11203487
Alignment:
| Q |
235 |
gtgataattaatattatggagacaatagattggactttcatccttgatt |
283 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||| |
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|
| T |
11203439 |
gtgataattactattctggagacaatagattggactttcatccttgatt |
11203487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 19807279 - 19807224
Alignment:
| Q |
236 |
tgataattaatattatggagacaatagattggactttcatccttgattctattact |
291 |
Q |
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||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
19807279 |
tgataatggatattttggagacaataggttggactttcatccttgattctattact |
19807224 |
T |
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