View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20853_high_2 (Length: 559)

Name: NF20853_high_2
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20853_high_2
NF20853_high_2
[»] chr2 (2 HSPs)
chr2 (28-546)||(2661999-2662513)
chr2 (486-546)||(2682008-2682068)
[»] chr8 (5 HSPs)
chr8 (505-546)||(19379497-19379538)
chr8 (505-546)||(19526541-19526582)
chr8 (505-546)||(19537435-19537476)
chr8 (505-537)||(19289702-19289734)
chr8 (506-546)||(19348431-19348471)
[»] chr4 (3 HSPs)
chr4 (452-545)||(31697180-31697273)
chr4 (453-546)||(36290614-36290707)
chr4 (493-545)||(36437717-36437769)
[»] chr3 (1 HSPs)
chr3 (493-546)||(3122586-3122639)
[»] chr7 (1 HSPs)
chr7 (499-543)||(20062569-20062613)
[»] chr1 (1 HSPs)
chr1 (506-546)||(36311356-36311396)


Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 28 - 546
Target Start/End: Original strand, 2661999 - 2662513
Alignment:
Q  28 cattgccggtgtaaaacttaattgcaccttcatccgatcagatttctctatgatgtcaatttgttattacactataccggcaaacatttatatggtagaa 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2661999 cattgccggtgtaaaacttaattgcaccttcatccgatcagatttctctatgatgtcaatttgttattacactataccggcaaacatttatatggtagaa 2662098  T
Q  128 tttgattggatgattgttacactgtcagtgcatagttctcaaactctttgattatttcagatacatgcgcattcattataatactcacatggcctaagag 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2662099 tttgattggatgattgttacactgtcagtgcatagttctcaaactctttgattatttcagatacatgcgcattcattataatactcacatggcctaagag 2662198  T
Q  228 attcaacttgtgatcagggtgaaaaaatcctctgtttttcttgccactcaatagctctaaaagtaaaactccaaagctataaacatcagatttgaaagag 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2662199 attcaacttgtgatcagggtgaaaaaatcctctgtttttcttgccactcaacagctctaaaagtaaaactccaaagctataaacatcagatttgaaagag 2662298  T
Q  328 aaatgtccatccattgttagctagctggaggcatgtatccactgcaacaatttcagaacatagaataatctagccacgttataagatgaaaaaagtttgg 427  Q
    ||||||||||||||||    ||  ||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||    
T  2662299 aaatgtccatccattgcgtact--ctggaggcatgtatccactgcaacaatttcagaacatagaataatttag--tagttataagatgaaaaaagtttgg 2662394  T
Q  428 taggttaagtcattttgttttagtacttactatgttccaactacccttttggtcttttcttcagtttgatctccaccaaacattcttgccattccaaagt 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2662395 taggttaagtcattttgttttagtacttactatgttccaactacccttttggtcttttcttcagtttgatctccaccaaacattcttgccattccaaagt 2662494  T
Q  528 cagaaatttttggattcat 546  Q
    |||||||||||||||||||    
T  2662495 cagaaatttttggattcat 2662513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 546
Target Start/End: Original strand, 2682008 - 2682068
Alignment:
Q  486 cttcagtttgatctccaccaaacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    |||||||||||||||  ||||| ||||| ||||| |||||||| || ||||||||||||||    
T  2682008 cttcagtttgatctctgccaaatattctagccatcccaaagtctgatatttttggattcat 2682068  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 19379538 - 19379497
Alignment:
Q  505 aaacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    ||||||||||||||| ||||| |||| |||||||||||||||    
T  19379538 aaacattcttgccataccaaaatcagcaatttttggattcat 19379497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Original strand, 19526541 - 19526582
Alignment:
Q  505 aaacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  19526541 aaacattcttgccataccaaaatcagaaatttttgggttcat 19526582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 546
Target Start/End: Original strand, 19537435 - 19537476
Alignment:
Q  505 aaacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  19537435 aaacattcttgccataccaaaatcagaaatttttgggttcat 19537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 537
Target Start/End: Complemental strand, 19289734 - 19289702
Alignment:
Q  505 aaacattcttgccattccaaagtcagaaatttt 537  Q
    ||||||||||||||||||||| |||||||||||    
T  19289734 aaacattcttgccattccaaaatcagaaatttt 19289702  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 546
Target Start/End: Complemental strand, 19348471 - 19348431
Alignment:
Q  506 aacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  19348471 aacattcttgccataccaaaatcagaaatttttgggttcat 19348431  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 545
Target Start/End: Complemental strand, 31697273 - 31697180
Alignment:
Q  452 acttactatgttccaactacccttttggtcttttcttcagtttgatctccaccaaacattcttgccattccaaagtcagaaatttttggattca 545  Q
    |||||||||||||||||||| || || || ||| ||||| | || ||||| |||||   ||| ||||||||||| || || |||||||||||||    
T  31697273 acttactatgttccaactactctatttgtatttccttcaatctggtctcctccaaaagatctggccattccaaaatctgatatttttggattca 31697180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 546
Target Start/End: Complemental strand, 36290707 - 36290614
Alignment:
Q  453 cttactatgttccaactacccttttggtcttttcttcagtttgatctccaccaaacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    ||||||||||||||||||| || |  || ||  ||||| |||||| ||| ||||| ||  ||||||  |||||||| |||||||||||||||||    
T  36290707 cttactatgttccaactactctctctgtattcccttcattttgatttcccccaaatatctttgccaagccaaagtctgaaatttttggattcat 36290614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 36437717 - 36437769
Alignment:
Q  493 ttgatctccaccaaacattcttgccattccaaagtcagaaatttttggattca 545  Q
    ||||||||||||||||||||| ||||| ||||| || | ||||||||| ||||    
T  36437717 ttgatctccaccaaacattctagccataccaaaatctgcaatttttgggttca 36437769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 3122639 - 3122586
Alignment:
Q  493 ttgatctccaccaaacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    ||||||||| |||||  ||||||| | ||||||||| |||||||||||||||||    
T  3122639 ttgatctcctccaaatgttcttgctagtccaaagtctgaaatttttggattcat 3122586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 543
Target Start/End: Original strand, 20062569 - 20062613
Alignment:
Q  499 tccaccaaacattcttgccattccaaagtcagaaatttttggatt 543  Q
    ||||||||| ||||| ||||||||||||||||||| ||| |||||    
T  20062569 tccaccaaagattctagccattccaaagtcagaaactttgggatt 20062613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 546
Target Start/End: Original strand, 36311356 - 36311396
Alignment:
Q  506 aacattcttgccattccaaagtcagaaatttttggattcat 546  Q
    |||||||||||||| ||||| |||||||||||||| |||||    
T  36311356 aacattcttgccataccaaaatcagaaatttttgggttcat 36311396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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