View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_21 (Length: 302)
Name: NF20853_high_21
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 25284650 - 25284914
Alignment:
| Q |
10 |
gcagagagttctcagatttcgagttcttataagaggatagcttctgttggtataattaagactccgagatcaccggggcggaatacgtttgataatgttg |
109 |
Q |
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| T |
25284650 |
gcagagagttctcagatttcgagttcttataagaggatagcttctgttggtataattaagactccgagatcaccgggacggaatgcgtttgataatgttg |
25284749 |
T |
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| Q |
110 |
atgattctgatgatgatggaacacaacttagtgatgataatcacattcctttttaccctgtgaccggagattctacaaattcttatgtgaggattatgat |
209 |
Q |
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| T |
25284750 |
atgattctgatgatgatggaacacaacttagtgatgataatcacattcctttttaccctgtgaccggagattctacaaattcttatgtgaggattatgat |
25284849 |
T |
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| Q |
210 |
ttattgttgtttgtttggatatttatgcattttaattctttgtcaactaaactatggtttgttgt |
274 |
Q |
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| T |
25284850 |
ttattgttgtttgtttggatatttatgcattttaattctttgtcaactaaactatggtttgttgt |
25284914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 14662690 - 14662564
Alignment:
| Q |
91 |
aatacgtttgataatgttgatgattctgatgatgatggaacacaacttagtgatgataatcacattcctttttaccctgtgaccggagattctacaaatt |
190 |
Q |
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||||| ||||| |||||||| |||||||||||||||| |||||||||| | ||| ||||||||||||||| | || |||||| |||||||| |||||| |
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| T |
14662690 |
aatacatttgaaaatgttgaggattctgatgatgatgaaacacaacttggctatggtaatcacattcctttcttccatgtgactagagattcttcaaatt |
14662591 |
T |
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| Q |
191 |
cttatgtgaggattatgatttattgtt |
217 |
Q |
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| T |
14662590 |
cttatgtaaggataacgattaattgtt |
14662564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 203
Target Start/End: Original strand, 5080846 - 5080958
Alignment:
| Q |
91 |
aatacgtttgataatgttgatgattctgatgatgatggaacacaacttagtgatgataatcacattcctttttaccctgtgaccggagattctacaaatt |
190 |
Q |
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||||| ||||| |||||||| |||||||||||||||| |||||||||| | |||| ||||||||||||||| | || |||||| |||||||| |||||| |
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| T |
5080846 |
aatacatttgaaaatgttgaggattctgatgatgatgaaacacaacttggcgatggtaatcacattcctttcttccatgtgactagagattcttcaaatt |
5080945 |
T |
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| Q |
191 |
cttatgtgaggat |
203 |
Q |
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| T |
5080946 |
cttatgtgaggat |
5080958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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