View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_22 (Length: 300)
Name: NF20853_high_22
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 60 - 272
Target Start/End: Complemental strand, 4619008 - 4618796
Alignment:
| Q |
60 |
gtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatc |
159 |
Q |
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| T |
4619008 |
gtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatgatc |
4618909 |
T |
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| Q |
160 |
taaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggtta |
259 |
Q |
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| T |
4618908 |
taaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggtta |
4618809 |
T |
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| Q |
260 |
agtgtcaagtctg |
272 |
Q |
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| T |
4618808 |
agtgtcaagtctg |
4618796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 58 - 272
Target Start/End: Original strand, 45984652 - 45984858
Alignment:
| Q |
58 |
ctgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatga |
157 |
Q |
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| T |
45984652 |
ctgtggctgttggagtcatcaaggctgtgaagaagaaggatcctgctgcaggaggtaaaatcactaagtcgatattgaaaaaatgaactgtgcaagatga |
45984751 |
T |
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| Q |
158 |
tctaaatttaaatagaaagtgcatcgtcgttattacaataataattagtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggt |
257 |
Q |
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| T |
45984752 |
tcta----tctagcgaaa-tctatcgttgttattac---cataaatagtctttggtccttagtatttctatttctcctctagtaaacttgttttgcagat |
45984843 |
T |
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| Q |
258 |
taagtgtcaagtctg |
272 |
Q |
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| T |
45984844 |
taagtgtgaagtctg |
45984858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 38138819 - 38138921
Alignment:
| Q |
58 |
ctgtggctgttggagtcattaaggctgtgaagaagaaggatcctggtgcaggaggtagtatcactaaatcggcattgcagaagtgaattgtgcaggatga |
157 |
Q |
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| T |
38138819 |
ctgtggctgttggagtcatcatggttgtgaagaagaaggatcctcatgcagaaggtaagatcgctaagtaggcattgaagaagtgaatcttgcaggatga |
38138918 |
T |
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| Q |
158 |
tct |
160 |
Q |
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||| |
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| T |
38138919 |
tct |
38138921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 272
Target Start/End: Original strand, 43067815 - 43067882
Alignment:
| Q |
205 |
gtctttggtcctgagtatttctataccttgtctagtaaacttgttttgcaggttaagtgtcaagtctg |
272 |
Q |
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| T |
43067815 |
gtctttggtccttagtatttctatttctagtctagtttacttgtttttcatattaagtgtcaagtctg |
43067882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 3300055 - 3300013
Alignment:
| Q |
58 |
ctgtggctgttggagtcattaaggctgtgaagaagaaggatcc |
100 |
Q |
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| T |
3300055 |
ctgtggctgttggtgtcatcaaggctgtggagaagaaggatcc |
3300013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 43044321 - 43044279
Alignment:
| Q |
58 |
ctgtggctgttggagtcattaaggctgtgaagaagaaggatcc |
100 |
Q |
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| T |
43044321 |
ctgtggctgttggggtcatcaaggctgtggagaagaaggatcc |
43044279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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