View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_5 (Length: 377)
Name: NF20853_high_5
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 157 - 348
Target Start/End: Complemental strand, 23596018 - 23595826
Alignment:
| Q |
157 |
aaaattcactttcatacttatatacaaaaacataaatcatgctctagcactacaacctaatcatataaccaaaccaattgtataaacaatgcaaaaacta |
256 |
Q |
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| T |
23596018 |
aaaattcactttcatacttatatacaaaaacataaatcatgctctagcactacaacctaatcatataaccaaaccaattgtataaacaatgcaaaaacta |
23595919 |
T |
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| Q |
257 |
taaccaacaatttcacaacaataaaattcacctttctatcttttctactgtaaggcc-aaagaaacaaagtcggaaatcaaggtttaagagtt |
348 |
Q |
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| T |
23595918 |
taaccaacaatttcacaacaataaaattcacctttctatcttttgtactgtaaggccaaaaaaaacaaagtcggaaatctaggtttaagagtt |
23595826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 61 - 154
Target Start/End: Complemental strand, 23596086 - 23595989
Alignment:
| Q |
61 |
tgtcaacaatctctaatctcatgaccaa-tgcaaaaccat-atcaagaatcttacaatcataaac--taaaattcactttcatacttatatacaaaaa |
154 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23596086 |
tgtcaacaatctctaatctcataaccaaatgcaaaaccattatcaacaatcttacaatcataaacaataaaattcactttcatacttatatacaaaaa |
23595989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 23587031 - 23586949
Alignment:
| Q |
193 |
tcatgctctagcactacaacctaatcatataaccaaaccaattgtataaacaatgcaaaaactataaccaacaatttcacaac |
275 |
Q |
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||||| |||| |||| |||| ||||||||||||||||| |||| ||||| ||||||| ||||||| | ||||||||| ||||| |
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| T |
23587031 |
tcatgttctaacacttcaacataatcatataaccaaactaattatataatcaatgcacaaactattatcaacaattttacaac |
23586949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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