View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_6 (Length: 370)
Name: NF20853_high_6
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_6 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 47680669 - 47680999
Alignment:
| Q |
30 |
cgataaccctacagaaacaattgaaggtattgtgcgaaccctacaaaaactctcaagtaagtagaaattgagtaagcataagtaattgataaaggatata |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
47680669 |
cgataaccctacagaaacaattgaaggtattgtgcgaaccctatagaaactctcaagtaatttgaaattgagtaagcataagtaattgataaaggatat- |
47680767 |
T |
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| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaacaaaactcgtactcaaaggacacttaaaatgaaacgaatgaggtattg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47680768 |
---aattgatgaattatatcagtaaactatcaaaacgacggttaaataggaacaaaactcgtactcaaaggacacttaaaaagaaacgaatgaggtattg |
47680864 |
T |
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| Q |
230 |
tgtgaatctacatgatcgcaatcattcttgtatttcttgcataatgccttttggacattgttatgatgagtatatcttaaattattgagaaagtactaaa |
329 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
47680865 |
tgtgaatctacatgaaagcaatcattcttgtatttcttgcataatgccttttggacattgttatgatgagtatagcttaaattattgagaaagtactaca |
47680964 |
T |
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| Q |
330 |
acacaagacgatttttgggaagacttagacctatg |
364 |
Q |
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| T |
47680965 |
acaaaagacgatttttgggaagacttagacctatg |
47680999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 7259788 - 7259822
Alignment:
| Q |
152 |
taaactatcaaaacgacggttaaataggaacaaaa |
186 |
Q |
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| T |
7259788 |
taaaatatcaaaacgacggttaaataggaacaaaa |
7259822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 54675258 - 54675310
Alignment:
| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaac |
182 |
Q |
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| T |
54675258 |
tataattgataaattgtatccttaaaatatcaaaatgacggttaaataggaac |
54675310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 272454 - 272506
Alignment:
| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaac |
182 |
Q |
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| T |
272454 |
tataattgataaattgtaccattaaaatatcaaaacgacagttaaataggaac |
272506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 41411538 - 41411590
Alignment:
| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaac |
182 |
Q |
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| T |
41411538 |
tataattgataaattgtatccttaaaatatcaaaatgacggttaaataggaac |
41411590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 1719950 - 1720033
Alignment:
| Q |
129 |
atataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaaca--aaactcgtactcaaaggacacttaaaa |
210 |
Q |
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| T |
1719950 |
atataattgataaattatacaaataaactatcaaaacaacaattaaataggaacaatatattcgtactcaaacgaaacttaaaa |
1720033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 37269458 - 37269402
Alignment:
| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaataggaacaaaa |
186 |
Q |
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|||||||||| ||| |||| |||| |||||||||||| ||||||||||||||||| |
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| T |
37269458 |
tataattgatcaatcgtatccttaaaatatcaaaacgacagttaaataggaacaaaa |
37269402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 178
Target Start/End: Original strand, 408567 - 408615
Alignment:
| Q |
130 |
tataattgatgaattatatcagtaaactatcaaaacgacggttaaatag |
178 |
Q |
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| T |
408567 |
tataattgataaattgtatccataaaatatcaaaacgacggttaaatag |
408615 |
T |
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