View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_7 (Length: 365)
Name: NF20853_high_7
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 30 - 353
Target Start/End: Complemental strand, 38880557 - 38880242
Alignment:
| Q |
30 |
agatcttcaaagaatcaacttttatcttgcnnnnnnngtattagatttcttactattttgagtatttttcagaacaaaactgaagctaaaactactttcg |
129 |
Q |
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| T |
38880557 |
agatcttcaaagaatcaacttttatcttgcaaaaaaagtattagatttcttactattttgagtatttttcagaacaaaactgaagctaaaactactttcg |
38880458 |
T |
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| Q |
130 |
tcgatacaaagtgtttttcataattatactagcttctgctttatataaaatttataaacataactttgaaaacaatagtaacttacctactaaatatatt |
229 |
Q |
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| T |
38880457 |
tcgatacaaagtgtttttcataattatactagcttctgctttatataaaatttataaacataactttgaaaacaatagta--------agtaaatatatt |
38880366 |
T |
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| Q |
230 |
tacaggacgagtatatgcgtaccgtgactgcgagggtaaagtcgattgaagcacatcgacaggctgctgaagctaaaaatttgatcagtaacccttctcc |
329 |
Q |
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| T |
38880365 |
tacaggacgagtatatgcgtaccgtgactgcgagggtaaagtcgattgaagcacatcgacaggctgctgaagctaaaaatttgatcagtaacccttctcc |
38880266 |
T |
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| Q |
330 |
ctcaggtgacttatcctcttctct |
353 |
Q |
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| T |
38880265 |
ctcaggtgacttatcctcttctct |
38880242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 16632081 - 16631930
Alignment:
| Q |
86 |
tttgagtatttttcagaacaaaactgaagctaaaactactttcgtcgatacaaagtgtttttcataattatactagcttctgctttatataaaatttata |
185 |
Q |
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| T |
16632081 |
tttgagtagtttttaaaacaaaattgacgctataactacctttgtcaatacaaagtggtattcataattacactagcttctgctttatataaaatctcta |
16631982 |
T |
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| Q |
186 |
aacataactttgaaaac--aatagtaacttacctactaaatatatttacagg |
235 |
Q |
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| T |
16631981 |
aacacgacttttaaaacataatagtaacttttctactaaatatgtttacagg |
16631930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 14630110 - 14629975
Alignment:
| Q |
102 |
aacaaaactgaagctaaaactactttcgtcgatacaaagtgtttttcataattatactagcttctgctttatataaaatttataaacataactttga--a |
199 |
Q |
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||||||| ||| |||| |||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||| | | |
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| T |
14630110 |
aacaaaattgacgctataactacctttgtcaatacaaagtgttattcataattatactagcttctgctttatataaaatctctaaacacgacttttaaga |
14630011 |
T |
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| Q |
200 |
aacaatagtaacttacctactaaatatatttacagg |
235 |
Q |
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| T |
14630010 |
cacaatagttacttatctacttaatatgtttacagg |
14629975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 16640823 - 16640699
Alignment:
| Q |
114 |
gctaaaactactttcgtcgatacaaagtgtttttcataattata--ctagcttctgctttatataaaatttataaacataactttgaaaa-caatagtaa |
210 |
Q |
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|||| |||||| || ||| |||||||||||| |||||||||||| |||||||| | |||||||||||| | | |||| ||||| |||| ||||||||| |
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| T |
16640823 |
gctataactacctttgtcaatacaaagtgttattcataattatatactagcttccgatttatataaaatctctgaacacgacttttaaaaacaatagtaa |
16640724 |
T |
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| Q |
211 |
cttacctactaaatatatttacagg |
235 |
Q |
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|||| ||||||||||| |||||||| |
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| T |
16640723 |
cttatctactaaatatgtttacagg |
16640699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 16619590 - 16619487
Alignment:
| Q |
86 |
tttgagtatttttcagaacaaaactgaagctaaaactactttcgtcgatacaaagtgtttttcataattatactagcttctgctttatataaaatttata |
185 |
Q |
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|||||||| |||| | ||||||| ||| |||| |||||| |||||||||||||||||||||| || |||||| ||||||||||||||||||| ||| |
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| T |
16619590 |
tttgagtagtttttaaaacaaaattgatgctataactaccttcgtcgatacaaagtgttttttgtagttatac--acttctgctttatataaaatcaata |
16619493 |
T |
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| Q |
186 |
aacata |
191 |
Q |
| |
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|||||| |
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| T |
16619492 |
aacata |
16619487 |
T |
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