View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20853_high_8 (Length: 361)

Name: NF20853_high_8
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20853_high_8
NF20853_high_8
[»] chr4 (11 HSPs)
chr4 (15-333)||(47652029-47652349)
chr4 (223-283)||(19479455-19479515)
chr4 (227-282)||(47806238-47806293)
chr4 (235-287)||(27655750-27655801)
chr4 (227-283)||(51750031-51750087)
chr4 (248-282)||(33900727-33900761)
chr4 (235-280)||(8027387-8027432)
chr4 (235-280)||(24664981-24665026)
chr4 (235-280)||(29523522-29523567)
chr4 (235-283)||(3936650-3936698)
chr4 (227-283)||(22164251-22164307)
[»] chr7 (6 HSPs)
chr7 (233-283)||(3671847-3671897)
chr7 (236-282)||(8901395-8901441)
chr7 (235-282)||(580916-580963)
chr7 (227-282)||(39801730-39801785)
chr7 (228-282)||(37235335-37235389)
chr7 (234-278)||(5579721-5579765)
[»] chr6 (8 HSPs)
chr6 (233-282)||(10278477-10278526)
chr6 (227-282)||(7082974-7083029)
chr6 (227-283)||(13496139-13496195)
chr6 (235-282)||(27080794-27080841)
chr6 (233-283)||(2445322-2445372)
chr6 (239-284)||(11071670-11071715)
chr6 (238-282)||(20744162-20744206)
chr6 (235-287)||(27080688-27080740)
[»] chr5 (10 HSPs)
chr5 (244-284)||(1642356-1642396)
chr5 (226-282)||(6624800-6624856)
chr5 (235-282)||(8544979-8545026)
chr5 (227-282)||(15889435-15889490)
chr5 (239-282)||(18489070-18489113)
chr5 (244-282)||(42168944-42168982)
chr5 (227-280)||(16094083-16094136)
chr5 (227-279)||(24408522-24408574)
chr5 (227-283)||(32339758-32339814)
chr5 (228-280)||(39980534-39980586)
[»] chr3 (9 HSPs)
chr3 (227-282)||(7824831-7824886)
chr3 (235-283)||(32928578-32928626)
chr3 (235-282)||(7827532-7827579)
chr3 (228-282)||(14030718-14030772)
chr3 (236-282)||(46226016-46226062)
chr3 (235-284)||(32632343-32632392)
chr3 (234-283)||(52575970-52576019)
chr3 (235-287)||(31138436-31138487)
chr3 (246-282)||(52172788-52172824)
[»] chr1 (9 HSPs)
chr1 (235-282)||(29987102-29987149)
chr1 (227-282)||(32944760-32944815)
chr1 (225-284)||(32950741-32950800)
chr1 (235-278)||(5280659-5280702)
chr1 (235-280)||(5869790-5869835)
chr1 (233-282)||(43356459-43356508)
chr1 (235-283)||(39949835-39949883)
chr1 (227-271)||(41950066-41950110)
chr1 (228-280)||(49130211-49130262)
[»] chr2 (15 HSPs)
chr2 (233-287)||(29896282-29896336)
chr2 (227-283)||(7201530-7201585)
chr2 (227-283)||(17548065-17548121)
chr2 (235-283)||(29133474-29133522)
chr2 (235-282)||(2256995-2257042)
chr2 (235-282)||(12599855-12599902)
chr2 (228-282)||(33064010-33064064)
chr2 (233-282)||(9547397-9547446)
chr2 (235-280)||(10195652-10195697)
chr2 (225-282)||(22267537-22267593)
chr2 (234-283)||(34469861-34469910)
chr2 (227-287)||(24033756-24033816)
chr2 (235-283)||(25274819-25274867)
chr2 (235-283)||(34367992-34368039)
chr2 (246-282)||(41526777-41526813)
[»] scaffold0259 (1 HSPs)
scaffold0259 (227-282)||(5437-5492)
[»] chr8 (5 HSPs)
chr8 (235-282)||(29376925-29376972)
chr8 (227-282)||(30623317-30623372)
chr8 (235-282)||(42172233-42172280)
chr8 (235-283)||(4756960-4757008)
chr8 (235-283)||(18533692-18533740)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 15 - 333
Target Start/End: Complemental strand, 47652349 - 47652029
Alignment:
Q  15 ggagtaccttttatacttttttgaattaatatattatctttgattatcaataa--caatcacaagacttattattattacaatcagtccgatttcttgat 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  47652349 ggagtaccttttatacttttttgaattaatatattatctttgattatcaataaaacaatcacaagacttattattattacaatcagtccgatttcttgat 47652250  T
Q  113 cacaaattgtcaatgtgacagcaaactatattagtgtctgagtcttcttattttctaagatatgtttcggagatggtggttttagaagggaaatttttgg 212  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47652249 cacaaattgtcaatgtgacagctaactatattagtgtctgagtcttcttattttctaagatatgtttcgaagatggtggttttagaagggaaatttttgg 47652150  T
Q  213 agggagctatattgtttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtttctagtaactaactgagataagctcacga 312  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||    
T  47652149 agggagctatattctttttctcgtggtggtcggggttcgaactccagatcttgcatatactatgcattgttcctactaattaactgagataagctcacga 47652050  T
Q  313 cgaatacggttatagcaatat 333  Q
     || |||||||||| ||||||    
T  47652049 ggagtacggttataacaatat 47652029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 19479455 - 19479515
Alignment:
Q  223 attgtttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||||||||| |||||||||||||| |||| || || |||||||||| |||||||||||    
T  19479455 attgtttttctgatggtggtcggggtttgaaccccggaccttgcatatattatgcattgtt 19479515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 47806238 - 47806293
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||||||| ||||||||||||| ||||| |||||||||| ||||||||||    
T  47806238 tttttttggtggtgttcggggttcgaaccccagaccttgcatatattatgcattgt 47806293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 27655801 - 27655750
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtttcta 287  Q
    ||||||| |||||||||||| ||||| |||||||||| |||||||||||||||    
T  27655801 gtggtggccggggttcgaac-ccagaccttgcatatattatgcattgtttcta 27655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 51750087 - 51750031
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||| |||||||| || |||||||||| | |||||||||||||| |||||||||||    
T  51750087 tttttatggtggtgttctgggttcgaaccctagatcttgcatatagtatgcattgtt 51750031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 33900727 - 33900761
Alignment:
Q  248 ttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||||||||||||||||| ||||||||||    
T  33900727 ttcgaactccagatcttgcatatattatgcattgt 33900761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 8027387 - 8027432
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    ||||||||||||||| |||| || ||||||||||||| ||||||||    
T  8027387 gtggtggtcggggtttgaacccccgatcttgcatatattatgcatt 8027432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 24664981 - 24665026
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    |||||||||||||||||||| || || |||||||||| ||||||||    
T  24664981 gtggtggtcggggttcgaaccccggaccttgcatatattatgcatt 24665026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 29523522 - 29523567
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    ||||| ||||||||||||||||| |||| |||||||| ||||||||    
T  29523522 gtggtagtcggggttcgaactccggatcatgcatatattatgcatt 29523567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 3936698 - 3936650
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||||| |||||||||||| || || |||||||||| |||||||||||    
T  3936698 gtggtggccggggttcgaaccccggaccttgcatatattatgcattgtt 3936650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 22164251 - 22164307
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||| || |||||||||||||| |||| ||||| ||| |||||| |||||||||||    
T  22164251 tttttttgttggtggtcggggtttgaaccccagaccttacatatattatgcattgtt 22164307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 3671897 - 3671847
Alignment:
Q  233 tggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  3671897 tggtggtggtcggggtttgaactccagaccttgcatatattatgcattgtt 3671847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 8901441 - 8901395
Alignment:
Q  236 tggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  8901441 tggtggtcgggattcgaaccccagatcctgcatatactatgcattgt 8901395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 580916 - 580963
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||||||||||||| || ||||||||||||  ||||||||||    
T  580916 gtggtggtcggggttcgaacgccggatcttgcatattttatgcattgt 580963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 39801785 - 39801730
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||||||||| |||||||| || || ||||||||||||| ||||||||||    
T  39801785 tttttttggtggtggttggggttcgtaccccggatcttgcatatattatgcattgt 39801730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 37235389 - 37235335
Alignment:
Q  228 ttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||| |||||||||||||||||| |||| |||| ||||||||||  |||||||||    
T  37235389 ttttttggtggtggtcggggttcaaacttcagaccttgcatatatcatgcattgt 37235335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 5579765 - 5579721
Alignment:
Q  234 ggtggtggtcggggttcgaactccagatcttgcatatactatgca 278  Q
    |||||||||||||||| |||| ||||| |||||||||| ||||||    
T  5579765 ggtggtggtcggggtttgaaccccagaccttgcatatattatgca 5579721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 10278526 - 10278477
Alignment:
Q  233 tggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  10278526 tggtggtggttggggttcgaacttcagatcttgcatatattatgcattgt 10278477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 7082974 - 7083029
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  7082974 tttttttggtggtggctggggtttgaactccagatcttgcatatattatgcattgt 7083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 13496195 - 13496139
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||| ||||| ||||||||||| ||||||| || |||||||||| |||||||||||    
T  13496195 tttttttggtgttggtcggggtttgaactccggaccttgcatatattatgcattgtt 13496139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 27080794 - 27080841
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  27080794 gtggtggtcggggtttgaattccagagcttgcatatattatgcattgt 27080841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 2445372 - 2445322
Alignment:
Q  233 tggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||||||||||||||||||| ||  |||||| ||||| |||||||||||    
T  2445372 tggtggtggtcggggttcgaaccccgaatcttgtatatattatgcattgtt 2445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Complemental strand, 11071715 - 11071670
Alignment:
Q  239 tggtcggggttcgaactccagatcttgcatatactatgcattgttt 284  Q
    ||||||| ||| || ||||||||||| |||||||||||||||||||    
T  11071715 tggtcggagtttgagctccagatctttcatatactatgcattgttt 11071670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 20744206 - 20744162
Alignment:
Q  238 gtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||||| |||| ||||| |||||||||| ||||||||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcatatattatgcattgt 20744162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 27080688 - 27080740
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtttcta 287  Q
    ||||||||||||||| |||  ||||| |||||||||| |||||||||| ||||    
T  27080688 gtggtggtcggggtttgaatcccagagcttgcatatattatgcattgtctcta 27080740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 1642396 - 1642356
Alignment:
Q  244 ggggttcgaactccagatcttgcatatactatgcattgttt 284  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  1642396 ggggttcgaactccagatcttgcatatattatgcattgttt 1642356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 6624856 - 6624800
Alignment:
Q  226 gtttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||| ||||||||| |||||||||||| || || |||||||||| ||||||||||    
T  6624856 gtttttttggtggtggccggggttcgaaccccggaccttgcatatattatgcattgt 6624800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 8544979 - 8545026
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||||||    
T  8544979 gtggtggtcggagttcgaactccggaccttgcatatattatgcattgt 8545026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 15889490 - 15889435
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| ||||||||||||||||| |||| | ||| |||||||||| ||||||||||    
T  15889490 tttttttggtggtggtcggggtttgaaccctagaccttgcatatattatgcattgt 15889435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 282
Target Start/End: Original strand, 18489070 - 18489113
Alignment:
Q  239 tggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||    
T  18489070 tggtcggggttcaaactccagaccttgcatatattatgcattgt 18489113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 42168944 - 42168982
Alignment:
Q  244 ggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  42168944 ggggttcgaaccccagaccttgcatatactatgcattgt 42168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 16094136 - 16094083
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    ||||| ||| ||||||||||||| |||| ||||||||| |||||| ||||||||    
T  16094136 tttttgtggcggtggtcggggtttgaaccccagatcttacatatattatgcatt 16094083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 24408574 - 24408522
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcat 279  Q
    ||||| |||| |||||||||||| |||| ||||| |||||||||| |||||||    
T  24408574 tttttttggtagtggtcggggtttgaaccccagaccttgcatatattatgcat 24408522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 32339814 - 32339758
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||| ||||||||| |||| ||||||| || || |||||||||| |||||||||||    
T  32339814 tttttttggtggtggccgggattcgaaccccggaccttgcatatattatgcattgtt 32339758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 280
Target Start/End: Complemental strand, 39980586 - 39980534
Alignment:
Q  228 ttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    |||| ||||||||||||||||| ||||||| || |||||||||  ||||||||    
T  39980586 ttttttggtggtggtcggggtttgaactccggaccttgcatattttatgcatt 39980534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 7824886 - 7824831
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||| |||| |||||    
T  7824886 tttttttggtggtggtcgggtttcgaactccagaccttgcatatattatgtattgt 7824831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 32928578 - 32928626
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||||||||||||| ||||||||||||||  ||||| |||||||||||    
T  32928578 gtggtggtcggggtttgaactccagatcttatatatattatgcattgtt 32928626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 7827579 - 7827532
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  7827579 gtggtggtcgggtttcgaactccagaccttacatatattatgcattgt 7827532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 14030718 - 14030772
Alignment:
Q  228 ttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||| ||||||||||||||||| |||||||| | |||||||||| ||||| ||||    
T  14030718 ttttttggtggtggtcggggtttgaactccaaaccttgcatatattatgcgttgt 14030772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 46226016 - 46226062
Alignment:
Q  236 tggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||||||||||||||| || |||||||||| ||||||||||    
T  46226016 tggtgttcggggttcgaactccggaccttgcatatattatgcattgt 46226062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 32632392 - 32632343
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgttt 284  Q
    ||||||||||||||| |||||||| || || |||||| ||||||||||||    
T  32632392 gtggtggtcggggtttgaactccaaattttacatatattatgcattgttt 32632343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 52576019 - 52575970
Alignment:
Q  234 ggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||||||||||| ||||||| ||||| |||||||||  |||||||||||    
T  52576019 ggtggtggtcgggattcgaaccccagaccttgcatattttatgcattgtt 52575970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 31138487 - 31138436
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtttcta 287  Q
    ||||||||||||||| |||| | |||||||||||||| |||||||||| ||||    
T  31138487 gtggtggtcggggtttgaac-ctagatcttgcatatattatgcattgtctcta 31138436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 52172788 - 52172824
Alignment:
Q  246 ggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  52172788 ggtttgaactccagatcttgcatatattatgcattgt 52172824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 29987102 - 29987149
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||||||    
T  29987102 gtggtggttggggttcgaactccagaccttgcatatattatgcattgt 29987149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 32944815 - 32944760
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||||||||||||||||||||| |||||  ||||||||| ||||||||||    
T  32944815 tttttttggtggtggtcggggttcgaaccccagacgttgcatatattatgcattgt 32944760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 284
Target Start/End: Original strand, 32950741 - 32950800
Alignment:
Q  225 tgtttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgttt 284  Q
    ||||||| |||||||||||| |||| ||||||| || |||||||||| ||||||||||||    
T  32950741 tgtttttttggtggtggtcgaggtttgaactccggaccttgcatatattatgcattgttt 32950800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 278
Target Start/End: Complemental strand, 5280702 - 5280659
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgca 278  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||    
T  5280702 gtggtggtcggggttcgaaccccagaccttgcatatattatgca 5280659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 5869835 - 5869790
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    ||||||||||||||| |||||||  |||||||||||| ||||||||    
T  5869835 gtggtggtcggggtttgaactccgaatcttgcatatattatgcatt 5869790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 43356508 - 43356459
Alignment:
Q  233 tggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||||||||| |||||||| | ||| |||||| ||||||||||    
T  43356508 tggtggtggtcggggtttgaactccaaaccttacatatattatgcattgt 43356459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 39949883 - 39949835
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||||||||| ||||||| ||||| |||| ||||| |||||||||||    
T  39949883 gtggtggtcgggattcgaaccccagaccttgtatatattatgcattgtt 39949835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 41950066 - 41950110
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatata 271  Q
    ||||| ||||||||||||||||||||||  |||| ||||||||||    
T  41950066 tttttttggtggtggtcggggttcgaacctcagaccttgcatata 41950110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 49130211 - 49130262
Alignment:
Q  228 ttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    |||| |||||||||||||||||||||||| | |||||||||||  ||||||||    
T  49130211 ttttttggtggtggtcggggttcgaactcga-atcttgcatattttatgcatt 49130262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 29896282 - 29896336
Alignment:
Q  233 tggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtttcta 287  Q
    ||||||||||||||||| |||| ||| | |||||||||| |||||||||||||||    
T  29896282 tggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtttcta 29896336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 7201585 - 7201530
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||| |||||||||||||| |||||||||||||  ||||||||| |||||||||||    
T  7201585 tttttttggtggtggtcggg-ttcgaactccagactttgcatatattatgcattgtt 7201530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 17548121 - 17548065
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||| ||||||| |||||||||||||||||||| |||| ||||| |||| ||||||    
T  17548121 tttttttggtggtagtcggggttcgaactccagaccttgtatatattatgaattgtt 17548065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 29133474 - 29133522
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||||||||||||||||| | |||||||||||||  |||||||||||    
T  29133474 gtggtggtcggggttcgaaccctagatcttgcatattttatgcattgtt 29133522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 2257042 - 2256995
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||| |||||||||||| ||||| |||||||||| ||||||||||    
T  2257042 gtggtggccggggttcgaaccccagaccttgcatatattatgcattgt 2256995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 12599855 - 12599902
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||||||||||||||| ||||| |||||||||| |||| |||||    
T  12599855 gtggtggtcggggttcgaaccccagaccttgcatatattatgtattgt 12599902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 33064064 - 33064010
Alignment:
Q  228 ttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||| ||||||||| ||| ||||||||||| || |||||||||| ||||||||||    
T  33064064 ttttttggtggtggccggagttcgaactccggaccttgcatatattatgcattgt 33064010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 9547397 - 9547446
Alignment:
Q  233 tggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||||||||| |||| ||| | |||||||||| ||||||||||    
T  9547397 tggtggtggtcggggtttgaaccccaaaccttgcatatattatgcattgt 9547446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 10195652 - 10195697
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcatt 280  Q
    |||||| || ||||| ||||||||||||||||||||| ||||||||    
T  10195652 gtggtgatcagggtttgaactccagatcttgcatatattatgcatt 10195697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 22267593 - 22267537
Alignment:
Q  225 tgtttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||| ||||||||||||||||| ||||| || | |||||||||| ||||||||||    
T  22267593 tgtttttttggtggtggtcggggtttgaact-caaaccttgcatatattatgcattgt 22267537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 34469861 - 34469910
Alignment:
Q  234 ggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||||||||||||||||||| || || ||||||||  ||||||||||||    
T  34469861 ggtggtggtcggggttcgaaccccggaccttgcataagctatgcattgtt 34469910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 287
Target Start/End: Complemental strand, 24033816 - 24033756
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgtttcta 287  Q
    ||||| ||||||||||||||||||||||| || |  ||||||||  |||||||||| ||||    
T  24033816 tttttttggtggtggtcggggttcgaacttcacactttgcatattttatgcattgtctcta 24033756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 25274819 - 25274867
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||| ||||||||||||| ||||| ||| |||||| |||||||||||    
T  25274819 gtggtgttcggggttcgaaccccagaccttacatatattatgcattgtt 25274867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 34368039 - 34367992
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    ||||||||||||||| |||||| |||||||| ||||| |||||||||||    
T  34368039 gtggtggtcggggtttgaactc-agatcttgtatatattatgcattgtt 34367992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Original strand, 41526777 - 41526813
Alignment:
Q  246 ggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  41526777 ggttcgaaccccagaccttgcatatactatgcattgt 41526813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 5492 - 5437
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| ||||||||||||||| |||||| ||||| |||||||||  ||||||||||    
T  5492 tttttttggtggtggtcggggatcgaaccccagaccttgcatattttatgcattgt 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 29376972 - 29376925
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||||||||||||| |||||||||| |||||||||| || |||||||    
T  29376972 gtggtggtcggggtttgaactccagaccttgcatatattacgcattgt 29376925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 30623372 - 30623317
Alignment:
Q  227 tttttctggtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    ||||| |||| ||| ||||||||||||| ||||| |||||||||| ||||||||||    
T  30623372 tttttttggtcgtgttcggggttcgaaccccagaccttgcatatattatgcattgt 30623317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 42172233 - 42172280
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgt 282  Q
    |||||||| |||||| ||||||| ||||||||||||| ||||||||||    
T  42172233 gtggtggttggggtttgaactccggatcttgcatatattatgcattgt 42172280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 4756960 - 4757008
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||||||||||||||||| | |||| ||||||||  |||||||||||    
T  4756960 gtggtggtcggggttcgaacccaagatattgcatattttatgcattgtt 4757008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 18533740 - 18533692
Alignment:
Q  235 gtggtggtcggggttcgaactccagatcttgcatatactatgcattgtt 283  Q
    |||||||| |||||| |||| || ||||||||||||| |||||||||||    
T  18533740 gtggtggttggggtttgaaccccggatcttgcatatattatgcattgtt 18533692  T

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