View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20853_high_9 (Length: 359)
Name: NF20853_high_9
Description: NF20853
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20853_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 162 - 329
Target Start/End: Complemental strand, 8712866 - 8712703
Alignment:
| Q |
162 |
aaaaggtgaagatgaaaccatcaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
261 |
Q |
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| T |
8712866 |
aaaaggtgaagatgaaaccaccaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
8712767 |
T |
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| Q |
262 |
ctaagttatctttttgacagattttgtaatcttggatatgcaagaattaagatcgaaaatgtccacct |
329 |
Q |
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| T |
8712766 |
ctaagttatctttttgacagattttgtaatcttggatatgcaag----aagatcgaaaatgtccacct |
8712703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 162 - 329
Target Start/End: Complemental strand, 9064753 - 9064590
Alignment:
| Q |
162 |
aaaaggtgaagatgaaaccatcaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
261 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9064753 |
aaaaggtgaagatgaaaccaccaaacataaatctcaccttggcagatggtacaatcaaatttccttatggcatagtagaattcttgatggtaaaagtaaa |
9064654 |
T |
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| Q |
262 |
ctaagttatctttttgacagattttgtaatcttggatatgcaagaattaagatcgaaaatgtccacct |
329 |
Q |
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| T |
9064653 |
ctaagttatctttttgacagattttgtaatcttggatatgcaag----aagatcgaaaatgtccacct |
9064590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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