View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20854_high_1 (Length: 370)

Name: NF20854_high_1
Description: NF20854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20854_high_1
NF20854_high_1
[»] chr4 (6 HSPs)
chr4 (33-357)||(50250261-50250585)
chr4 (305-344)||(48705187-48705226)
chr4 (292-342)||(7773620-7773670)
chr4 (175-248)||(7237420-7237493)
chr4 (308-344)||(48852904-48852940)
chr4 (308-344)||(49043997-49044033)
[»] chr6 (1 HSPs)
chr6 (94-344)||(21979212-21979475)
[»] chr3 (2 HSPs)
chr3 (226-344)||(11015213-11015329)
chr3 (292-344)||(11005714-11005766)
[»] chr8 (2 HSPs)
chr8 (289-344)||(12195541-12195596)
chr8 (289-344)||(12439969-12440024)
[»] chr7 (1 HSPs)
chr7 (289-345)||(48884046-48884102)


Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 33 - 357
Target Start/End: Original strand, 50250261 - 50250585
Alignment:
Q  33 ccatgaaacccgaactgctgtccttggtcattgtatttgaccaatgaatgaaaaccattttttccaatgatatcattattttttgtagtgtatatagggt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250261 ccatgaaacccgaactgctgtccttggtcattgtatttgaccaatgaatgaaaaccattttttccaatgatatcattattttttgtagtgtatatagggt 50250360  T
Q  133 aaaagtaaccaggaggaagaacaagtgtcttagtccaacaagattctttcatcacccatatttcagttgtaccattctgaaaatcaccacccaatagact 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250361 aaaagtaaccaggaggaagaacaagtgtcttagtccaacaagattctttcatcacccatatttcagttgtaccattctgaaaatcaccacccaatagact 50250460  T
Q  233 gagaaattctccaaat-cccacaaataacaatatcgagattgatagtcaaaatcgtgatctggaagagggatctcaaaaagtttcctttccatgaaatca 331  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50250461 gagaatttctccaaatacccacaaataacaatatcgagattgatagtcaaaatcgtgatctggaagagggatctcaaaaagtttccttt-catgaaatca 50250559  T
Q  332 aaggcaacaataatgaagctagagga 357  Q
    ||||||||||||||||||||||||||    
T  50250560 aaggcaacaataatgaagctagagga 50250585  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 344
Target Start/End: Original strand, 48705187 - 48705226
Alignment:
Q  305 tcaaaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  48705187 tcaaaaagttccctttccattaaatcaaaggcaacaataa 48705226  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 342
Target Start/End: Original strand, 7773620 - 7773670
Alignment:
Q  292 tggaagagggatctcaaaaagtttcctttccatgaaatcaaaggcaacaat 342  Q
    ||||||||| |||||||| | |||||||||||| |||||||||| ||||||    
T  7773620 tggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaat 7773670  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 7237420 - 7237493
Alignment:
Q  175 attctttcatcacccatatttcagttgtaccattctgaaaatcaccacccaatagactgagaaattctccaaat 248  Q
    |||||||||||||||||||| || ||||| |||| | | ||||   | || |||||||||||||||||||||||    
T  7237420 attctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaat 7237493  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Complemental strand, 48852940 - 48852904
Alignment:
Q  308 aaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  48852940 aaaagtttcctttccattaaatcaaaggccacaataa 48852904  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 344
Target Start/End: Original strand, 49043997 - 49044033
Alignment:
Q  308 aaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    |||||||||||||| || |||||||||||||||||||    
T  49043997 aaaagtttcctttcaattaaatcaaaggcaacaataa 49044033  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 94 - 344
Target Start/End: Original strand, 21979212 - 21979475
Alignment:
Q  94 ttccaatgatatcattattttttgtagtgtatatagggtaaaagtaaccaggaggaagaacaagtgtcttagtccaacaaga------------ttcttt 181  Q
    ||||||||||||||| ||||||||||| ||||| |||| ||| || || | |||||||||||||| ||||| ||||| | ||            ||||||    
T  21979212 ttccaatgatatcataattttttgtagagtatacagggaaaatgtcacaacgaggaagaacaagtttcttattccaagaggaacgcactttgtattcttt 21979311  T
Q  182 catcacccatatttcagttgtaccattctgaaaatcaccacccaatagactgagaaattctccaaat-cccacaaataacaatatcgagattgatagtca 280  Q
    ||||||||||||||  | ||||  |||   | ||||  || |||||||||| ||||| ||||||||| ||||||||| || || |  | | ||||||| |    
T  21979312 catcacccatatttttgatgtatgatttccataatcgacatccaatagactaagaaaatctccaaatacccacaaatgacgatgtgaaaactgatagtga 21979411  T
Q  281 aaatcgtgatctggaagagggatctcaaaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  21979412 aaatcatgatctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataa 21979475  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 344
Target Start/End: Original strand, 11015213 - 11015329
Alignment:
Q  226 atagactgagaaattctccaaatc-ccacaaataacaatatcgagattgatagtcaaaatcgtgatctggaagagggatctcaaaaagtttcctttccat 324  Q
    ||||||| |||||||||||||||  |||||||| ||||| |  || || |||||||||| |   |||||||| | | ||||| ||||||||||||||||     
T  11015213 atagacttagaaattctccaaatatccacaaatcacaatctataggttcatagtcaaaacc---atctggaaaatgcatctccaaaagtttcctttccac 11015309  T
Q  325 gaaatcaaaggcaacaataa 344  Q
     ||||||||| |||||||||    
T  11015310 taaatcaaagccaacaataa 11015329  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 11005714 - 11005766
Alignment:
Q  292 tggaagagggatctcaaaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    ||||| ||| ||||| ||||||||||||||||  ||||||||| |||||||||    
T  11005714 tggaaaaggcatctctaaaagtttcctttccactaaatcaaagccaacaataa 11005766  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 12195596 - 12195541
Alignment:
Q  289 atctggaagagggatctcaaaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    |||||||||||| ||||| || | |||||||||||| ||||||||| |||||||||    
T  12195596 atctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataa 12195541  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 289 - 344
Target Start/End: Complemental strand, 12440024 - 12439969
Alignment:
Q  289 atctggaagagggatctcaaaaagtttcctttccatgaaatcaaaggcaacaataa 344  Q
    |||||||||||| ||||| || | |||||||||||| ||||||||| |||||||||    
T  12440024 atctggaagaggtatctctaacaatttcctttccattaaatcaaagacaacaataa 12439969  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 48884102 - 48884046
Alignment:
Q  289 atctggaagagggatctcaaaaagtttcctttccatgaaatcaaaggcaacaataat 345  Q
    |||||| ||| ||||||| || |||||| ||||||| |||||||||||| |||||||    
T  48884102 atctgggagacggatctctaacagtttcttttccattaaatcaaaggcagcaataat 48884046  T

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