View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20854_high_10 (Length: 320)
Name: NF20854_high_10
Description: NF20854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20854_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 37 - 310
Target Start/End: Complemental strand, 17390721 - 17390448
Alignment:
| Q |
37 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
136 |
Q |
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| T |
17390721 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
17390622 |
T |
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| Q |
137 |
attattcaatgctagatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcatt |
236 |
Q |
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| T |
17390621 |
attattcattgctagatccaaacttagcattcttataagtttcctcagtatttgaatcacgaatgatagtgtgaatctcacaatctccttttttatcatt |
17390522 |
T |
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| Q |
237 |
gttgttcttcacataaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatccctttg |
310 |
Q |
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| T |
17390521 |
gttgttcttcacataacttttgtaaacttgcactagtattcccttttgattttcatctcaatttcatccttttg |
17390448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 37 - 304
Target Start/End: Complemental strand, 13706678 - 13706412
Alignment:
| Q |
37 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
136 |
Q |
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| T |
13706678 |
tataaaagatttgtat-atctcatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaacaagaaaataagggtcgttaacag |
13706580 |
T |
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| Q |
137 |
attattcaatgctagatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcatt |
236 |
Q |
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| T |
13706579 |
attattcattgctagatccaaacttagcattcttataagtttcctcactgtttgaatcacagatgttagtgtgaatctcacaatctcgttcttcatcatt |
13706480 |
T |
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| Q |
237 |
gttgttcttcacataaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
304 |
Q |
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| T |
13706479 |
gttgttcttcacatcccttttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
13706412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 37 - 304
Target Start/End: Complemental strand, 13714169 - 13713903
Alignment:
| Q |
37 |
tataaaagatttgtatcatcacatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaataagaaaataagggtcgttaacag |
136 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13714169 |
tataaaagatttgtat-atctcatttggattaggtatatgagtgaaattacatgttcaataagacgtctcttgcaacaagaaaataagggtcgttaacag |
13714071 |
T |
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| Q |
137 |
attattcaatgctagatccaaacttagcattcttataagtttccttagtgtttgaatcacgaatgatagtgtgaatctcacaatctccttctttatcatt |
236 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||| ||||| |||||| |
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| T |
13714070 |
attattcattgctagatccaaacttagcattcttataagtttcctcactgtttgaatcacagatgttagtgtgaatctcacaatctcgttcttcatcatt |
13713971 |
T |
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| Q |
237 |
gttgttcttcacataaattttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13713970 |
gttgttcttcacatcccttttgtaaacttgcactagtagtcccttttgattttcatctcaatttcatc |
13713903 |
T |
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