View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20854_high_11 (Length: 318)
Name: NF20854_high_11
Description: NF20854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20854_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 28 - 307
Target Start/End: Complemental strand, 39151491 - 39151203
Alignment:
| Q |
28 |
catttctctcctaattatttgacatgtacatctagaaaaagaaaagagaatagagaaaaccatgataattatccatcaaagattctgttttatatagcca |
127 |
Q |
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| T |
39151491 |
catttctctcctaattatttgacatgtacatctagaaaaagaaaagagaatagagaaaaccatgataattatccatcaaagattctgttttatatagcca |
39151392 |
T |
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| Q |
128 |
ctcaccaaagtccccatgtcatgt------catcttc---tttgcaatcacaattcttatttttagcctaaatagtaagaaattgcttgcggtcccgtgt |
218 |
Q |
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| T |
39151391 |
ctcaccaaaatcaccatgtcatcttcttagcaatttcagttttgcaatcacaattcttatttttagcctaaatattaagaaattgcttgcggtcccgtgt |
39151292 |
T |
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| Q |
219 |
atgttttacaacttttaatttcacaataacttgtaaacaattcagacaaatacgannnnnnnactaaaaagtaatttctctctattcat |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
39151291 |
atgttttacaacttttaatttcacaataacttgtaaacaattcagacaaatacgatttttttactaaatagtaatttctctctattcat |
39151203 |
T |
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