View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20854_high_2 (Length: 362)
Name: NF20854_high_2
Description: NF20854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20854_high_2 |
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| [»] scaffold0197 (2 HSPs) |
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Alignment Details
Target: scaffold0197 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 5531 - 5834
Alignment:
| Q |
13 |
tccttagcaaaatttcctctctttatgttaggacgtagatagttcaaccatcttagcctacaactctttctgcatctgtttagaccttcaacaaaccaat |
112 |
Q |
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| T |
5531 |
tcctcagcaaaatttcctctctttatgttaggacgtagatagttcaaccatcttagcctacaactctttctgcatctgtttagaccttcaacaaaccaat |
5630 |
T |
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| Q |
113 |
gtttgatgnnnnnnnnnnnntaatcaactaagtaagtatgttggttcaattgtgtaagaaccaattgcaaagattgaacaagtcagtcatttcatgatga |
212 |
Q |
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| T |
5631 |
gtttgatgaaaaaagaaaaataatcaactaagtaagtatgttggttcaattgtgtaagaaccaattgcaaagattgaacaagtaagtcatttcatgatga |
5730 |
T |
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| Q |
213 |
tttcattttaatagtaaacccaaggtttttctagtcaagaagagtatggaccaatctctcaaaataacggatccgttttaagaggtcgacagttgatttt |
312 |
Q |
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| T |
5731 |
tttcattttaatagtaaacccaaggtttttctagtcaagaagagtatggaccaatctctcaaaataacggatccgttttaagaggtcgacagttgatttt |
5830 |
T |
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| Q |
313 |
caat |
316 |
Q |
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|||| |
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| T |
5831 |
caat |
5834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 5895 - 6012
Alignment:
| Q |
193 |
agtcagtcatttcatgatgatttcattttaatagtaaacccaaggtttttctagtcaagaagagtatggaccaatctctcaaaataa-cggatccgtttt |
291 |
Q |
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| T |
5895 |
agtcggtcatttcatgatgatttcattttaatagtgaacccaaggttttcctagtc---aagagcatggaccaatctctcaaaataatatgatccgtttt |
5991 |
T |
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| Q |
292 |
aagaggtcgacagttgatttt |
312 |
Q |
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| T |
5992 |
aagaggtcgacaattgatttt |
6012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 41544317 - 41544284
Alignment:
| Q |
49 |
agatagttcaaccatcttagcctacaactctttc |
82 |
Q |
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| T |
41544317 |
agatagttcaaccatcttagcctgcaactctttc |
41544284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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