View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20854_high_3 (Length: 359)
Name: NF20854_high_3
Description: NF20854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20854_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 332
Target Start/End: Complemental strand, 23748860 - 23748534
Alignment:
| Q |
6 |
ggtatattattctgtacaggaaaatagaatgaaatatgtatataataactataactataggttcatattgtgattctgttgtttggctggaaaaagcaac |
105 |
Q |
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| T |
23748860 |
ggtacattattctgtacaggaaaatagaatgaaatatgtatataataactataactataggttcatattgtgattcttttgtttggctggaaaaagcaac |
23748761 |
T |
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| Q |
106 |
tagccattcacaactttgtcaatgcagtacaacgtttccctccatgtcactaaagatggacaattctatcacaatatcttcctatttatctgcaaaaatg |
205 |
Q |
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| T |
23748760 |
tagccattcaaaactttgtcactgcagtacaatgtttccttccatgttactaaagatggacaacttggtcacaatatcttcctatttatctgcaaaaata |
23748661 |
T |
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| Q |
206 |
cacacaagagattaataacacatcttacctagcagtttgaaaacatggtcaagattatgttaatcacggatttggattccctgtagtcaagtaattgcac |
305 |
Q |
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| T |
23748660 |
cacacaacagattaataacacatcttacctagcagtttgaaaacatggtcaagattatgttaatcacggatttggattccctgtagtcaagtaatcgcac |
23748561 |
T |
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| Q |
306 |
attcgcgcagcgtaaatttccaaattg |
332 |
Q |
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| T |
23748560 |
attcgcgcagcgtaaatttccaaattg |
23748534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 23753601 - 23753544
Alignment:
| Q |
55 |
tataactataggttcatattgtgattctgttgtttggctggaaaaagcaactagccat |
112 |
Q |
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| T |
23753601 |
tataactatagtttcatattgtgattctgttgtttggttggagaaagaaactagccat |
23753544 |
T |
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