View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20854_high_7 (Length: 328)

Name: NF20854_high_7
Description: NF20854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20854_high_7
NF20854_high_7
[»] chr5 (3 HSPs)
chr5 (24-131)||(7927194-7927301)
chr5 (135-251)||(30964673-30964797)
chr5 (200-246)||(35836303-35836349)
[»] chr4 (1 HSPs)
chr4 (137-251)||(26144947-26145069)
[»] chr1 (2 HSPs)
chr1 (189-246)||(29633680-29633737)
chr1 (144-250)||(51946197-51946312)
[»] chr8 (2 HSPs)
chr8 (137-244)||(41076478-41076595)
chr8 (137-244)||(42009169-42009285)
[»] chr3 (2 HSPs)
chr3 (199-250)||(6102022-6102073)
chr3 (137-186)||(6100982-6101031)
[»] chr6 (1 HSPs)
chr6 (209-250)||(31047199-31047240)


Alignment Details
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 7927194 - 7927301
Alignment:
Q  24 tcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataattttcccaccttcctgggctgttattacccaaccacccta 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7927194 tcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataattttcccaccttcctgggctgttattacccaaccacccta 7927293  T
Q  124 gtaaataa 131  Q
    ||||||||    
T  7927294 gtaaataa 7927301  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 30964797 - 30964673
Alignment:
Q  135 atgagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagtt 226  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||     ||||    |||||||||||||| |||||||||||||||||||||    
T  30964797 atgagtcctgataggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagtt 30964698  T
Q  227 tagtcaaaactcatataaaccttga 251  Q
    |||||||||||||||||||||||||    
T  30964697 tagtcaaaactcatataaaccttga 30964673  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 35836349 - 35836303
Alignment:
Q  200 tattttatcttttaatgaagggtagtttagtcaaaactcatataaac 246  Q
    ||||| |||||||||||||||||||||| |||| || ||||||||||    
T  35836349 tatttcatcttttaatgaagggtagttttgtcataattcatataaac 35836303  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 251
Target Start/End: Original strand, 26144947 - 26145069
Alignment:
Q  137 gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagttta 228  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||     ||||    |||||||||||||| |||||||||||||||||||||||    
T  26144947 gagtcctgatgggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagttta 26145046  T
Q  229 gtcaaaactcatataaaccttga 251  Q
    |||||||||||||||||||||||    
T  26145047 gtcaaaactcatataaaccttga 26145069  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 29633737 - 29633680
Alignment:
Q  189 ggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataaac 246  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  29633737 ggtagttttggtatttcatcttttaatgaagggtagttttgtcaaaacccatataaac 29633680  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 51946312 - 51946197
Alignment:
Q  144 gataggtgaacacacttagctggcaacacactctgatacaccc---------atggtagttttggtattttatcttttaatgaagggtagtttagtcaaa 234  Q
    ||||||||||||||||||||  ||||||||| || ||||||||         ||| ||||||| ||||||  ||||||||||||||||||||| ||||||    
T  51946312 gataggtgaacacacttagcatgcaacacacccttatacacccccatgtggcatgatagttttagtatttcttcttttaatgaagggtagttttgtcaaa 51946213  T
Q  235 actcatataaaccttg 250  Q
    || |||||||||||||    
T  51946212 acccatataaaccttg 51946197  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 41076595 - 41076478
Alignment:
Q  137 gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----------atggtagttttggtattttatcttttaatgaagggtagtt 226  Q
    |||||||||||||||||||  ||||| ||||||||||||||  |||||||          | |||||||||||||||| | |||||||||||||||||||    
T  41076595 gagtcctgataggtgaacatgcttaggtggcaacacactcttgtacaccccccatgtggcagggtagttttggtatttcaccttttaatgaagggtagtt 41076496  T
Q  227 tagtcaaaactcatataa 244  Q
    | |||||||| |||||||    
T  41076495 ttgtcaaaacccatataa 41076478  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 244
Target Start/End: Complemental strand, 42009285 - 42009169
Alignment:
Q  137 gagtcctgataggtgaacacacttagctggcaacacactctgataca--cccatg-------gtagttttggtattttatcttttaatgaagggtagttt 227  Q
    |||||||||||||||||||  ||||| ||||||||||||||  ||||  ||||||       ||||||| ||||||| | ||||||||||||||||||||    
T  42009285 gagtcctgataggtgaacatgcttaggtggcaacacactcttgtacatccccatgtggcagggtagtttcggtatttcaccttttaatgaagggtagttt 42009186  T
Q  228 agtcaaaactcatataa 244  Q
     |||||||| |||||||    
T  42009185 tgtcaaaacccatataa 42009169  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 6102022 - 6102073
Alignment:
Q  199 gtattttatcttttaatgaagggtagtttagtcaaaactcatataaaccttg 250  Q
    |||||| |||||||||||||| ||||||| |||||||| |||||||||||||    
T  6102022 gtatttcatcttttaatgaagagtagttttgtcaaaacccatataaaccttg 6102073  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 6100982 - 6101031
Alignment:
Q  137 gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc 186  Q
    |||| |||||||||||||||| |||||||||||||| | || ||||||||    
T  6100982 gagtgctgataggtgaacacatttagctggcaacacccccttatacaccc 6101031  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 31047240 - 31047199
Alignment:
Q  209 ttttaatgaagggtagtttagtcaaaactcatataaaccttg 250  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  31047240 ttttaatgaagggtagttttgtcaaaacccatataaaccttg 31047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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