View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20855_high_1 (Length: 807)
Name: NF20855_high_1
Description: NF20855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20855_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 456
Target Start/End: Complemental strand, 27184800 - 27184357
Alignment:
| Q |
29 |
atctttcatcctttctctcaacaaacaaatcttacattatgtagttggtgtaattttcactccattttaaactttgggaagatagataaataactaaata |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27184800 |
atctttcatcctttctctcaacaaacaaatcttacattatgtagttggtgtaattttcactccattttaaactttgggaagatagataaataactaaata |
27184701 |
T |
|
| Q |
129 |
ctaatcctaaaaagagaactatatgtagttagatgacagtgtatcttcc----aataataaaatgataatggaagtaatcaacccaaaatcatcaaataa |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27184700 |
ctaatcctaaaaagagaactatatgtagttagatgacagtgtatcttccaaataataataaaatgataatggaagtaatcaacccaaaatcatcaaataa |
27184601 |
T |
|
| Q |
225 |
ttccatgaatcagtcttaatctaatgaacattagagaatataaaatagatttacctgttttatatat------------ttcatttaacaaattgttttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27184600 |
ttccatgaatcagtcttaatctaatgaaaattagagaatataaaatagatttacctgttttatatatttcatttaatacttcatttaacaaattgttttc |
27184501 |
T |
|
| Q |
313 |
taagcatacaaagacagaggggnnnnnnnttcattagtaatacacaaagacaagtgagcaggtaagtaaagcaaaaatcagtctattatgtcatagaaag |
412 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
27184500 |
taagcatacaaagacagagaggaaaaaaattcattagtaatacacaaagacaagtgagcaggtaagtaaagcaaaaatcagtctaatatgtcatagaaag |
27184401 |
T |
|
| Q |
413 |
tactgcatcctattatttaatacatcattaaatctgagtaacta |
456 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
27184400 |
tactgcatcctattatttaatacagcattaaatcttagtaacta |
27184357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 455 - 795
Target Start/End: Complemental strand, 27184211 - 27183871
Alignment:
| Q |
455 |
tagactcataaaccttcaggttgaaaactttaagcttttactacaaaagcaattaactgtttattcctccaattggaccaaggtttttcttgtagagtac |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27184211 |
tagactcataaaccttcaggttgaaaactttaagctgttactacaaaagcaattaactgtttattcctccaattggaccaaggtttttcttgtagagtac |
27184112 |
T |
|
| Q |
555 |
aatttgacatacatgacttgcacctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagctattttaccattctttttatttatgaat |
654 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27184111 |
aatttgacatacgcgacttgcacctttaaaatcgatctcctcaatcacctcggttgttaaatcaaaacaagctattttaccattctttttatttatgaat |
27184012 |
T |
|
| Q |
655 |
atatttccgttcttctcggctgcgataacatgattaacataagatgaaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcaccca |
754 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
27184011 |
atatttccgttcttcccggctgcgataacatgattaacataagatgaaggtccaatatcgaagagtttaatccatgattctttgacaccaatttcaccca |
27183912 |
T |
|
| Q |
755 |
atatcgatatggtgtaagacttggttgtagaataatctgtg |
795 |
Q |
| |
|
| |||||||||||||||||||||||| || | ||||||||| |
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|
| T |
27183911 |
aaatcgatatggtgtaagacttggttatatagtaatctgtg |
27183871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 410 - 775
Target Start/End: Original strand, 27229995 - 27230360
Alignment:
| Q |
410 |
aagtactgcatcctattatttaatacatcattaaatctgagtaactagactcataaaccttcaggttgaaaactttaagcttttactacaaaagcaatta |
509 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||||||| |||||||||||||||||| || | |||||||||||||||||||| |||||||||||||||| |
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|
| T |
27229995 |
aagtactgcatcctattgtttaataaagcattaaatcttagtaactagactcataaatctcctggttgaaaactttaagctttgactacaaaagcaatta |
27230094 |
T |
|
| Q |
510 |
actgtttattcctccaattggaccaaggtttttcttgtagagtacaatttgacatacatgacttgcacctttaaaaccgatctcctcaatcacctcggtt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |||||||| | |||| || | | |||||||||||||||||||||||||| |||| |
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|
| T |
27230095 |
actgtttattcctccaattggaccaaggtttttcttgtaatgtactatttgacaaatatgaatttctcttttaaaaccgatctcctcaatcaccttggtt |
27230194 |
T |
|
| Q |
610 |
gttaaatcaaaacaagctattttaccattctttttatttatgaatatatttccgttcttctcggctgcgataacatgattaacataagatgaaggtccaa |
709 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | || ||| |||||||||||| |||||| || |||| |||| || ||||||||||||| ||||||||| |
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|
| T |
27230195 |
gttaaatcaaagcaagctattttaccattctctatacttaagaatatatttcctttcttcccgactgcaataatatcattaacataagataaaggtccaa |
27230294 |
T |
|
| Q |
710 |
tatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatggtgtaagact |
775 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||| |||||||| || |||||||||||||||| |
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|
| T |
27230295 |
tatcgaagagtctagtccatgattccttgacaccaatctcacccaaaattgatatggtgtaagact |
27230360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 577 - 765
Target Start/End: Original strand, 13472793 - 13472984
Alignment:
| Q |
577 |
cctttaaaaccgatctcctcaatcacc-tc--ggttgttaaatcaaaacaagctattttaccattctttttatttatgaatatatttccgttcttctcgg |
673 |
Q |
| |
|
||||||| | ||||||||||||||| | || ||| |||||||||||||||||||||||||||| |||||||| | ||||||||| || || ||| | | |
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|
| T |
13472793 |
cctttaacatcgatctcctcaatcatcatcatggtagttaaatcaaaacaagctattttaccatcttttttattgaagaatatattgccctttttcccag |
13472892 |
T |
|
| Q |
674 |
ctgcgataacatgattaacataagatgaaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
765 |
Q |
| |
|
|||||||| ||| | || |||| ||||| | ||||| |||||| || ||||||||||||||||||| ||||||||||| || |||||| |
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|
| T |
13472893 |
ctgcgatagaatgttcaatggaagacaaaggttcgatatcaaagagtctagtccatgattctttgacaccgatttcacccaaaattgatatg |
13472984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 247
Target Start/End: Complemental strand, 27186020 - 27185889
Alignment:
| Q |
124 |
aaatactaatcctaaaaagagaactatat---gtagtta-gatgacagtgtatcttccaa----taataaaatgataatggaagtaatcaacccaaaatc |
215 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| ||| ||||||||| || ||||||| ||||| |||||||||||||||||| || || ||| |
|
|
| T |
27186020 |
aaatactaatcctaaaaagagaagtatacaaggtaattaagatgacagtttaacttccaaataataatagaatgataatggaagtaattaatagaacatc |
27185921 |
T |
|
| Q |
216 |
atcaaataattccatgaatcagtcttaatcta |
247 |
Q |
| |
|
| ||||||||||||| || |||||||||||| |
|
|
| T |
27185920 |
accaaataattccatctataagtcttaatcta |
27185889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 27229436 - 27229478
Alignment:
| Q |
213 |
atcatcaaataattccatgaatcagtcttaatctaatgaacat |
255 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
27229436 |
atcaccaaataattccatgtatcagtcttaatctattgaacat |
27229478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 701 - 765
Target Start/End: Complemental strand, 13281153 - 13281089
Alignment:
| Q |
701 |
aaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
765 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||| ||||||||||||||||| || |||||| |
|
|
| T |
13281153 |
aaggtccaacatcgaagagtctagtccatgattctttaacaccaatttcacccaaaattgatatg |
13281089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 701 - 765
Target Start/End: Complemental strand, 28995047 - 28994983
Alignment:
| Q |
701 |
aaggtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
765 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||| || |||||| |
|
|
| T |
28995047 |
aaggtccaatatcgaagagtctaaaccatgattcaccgacaccaatttcacccaagattgatatg |
28994983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 714 - 764
Target Start/End: Complemental strand, 9764560 - 9764510
Alignment:
| Q |
714 |
gaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatat |
764 |
Q |
| |
|
||||||| ||||||||||||| |||||||||| ||||||||| || ||||| |
|
|
| T |
9764560 |
gaagagtctaatccatgattccttgacaccaagttcacccaaaattgatat |
9764510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 628
Target Start/End: Original strand, 19163113 - 19163163
Alignment:
| Q |
578 |
ctttaaaaccgatctcctcaatcacctcggttgttaaatcaaaacaagcta |
628 |
Q |
| |
|
|||||| ||| ||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
19163113 |
ctttaacaccaatctcctcaatcatcccggtagttaaatcaaaacaagcta |
19163163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 704 - 765
Target Start/End: Original strand, 28867117 - 28867178
Alignment:
| Q |
704 |
gtccaatatcgaagagtgtaatccatgattctttgacaccaatttcacccaatatcgatatg |
765 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||| | ||||||||||||||||| || |||||| |
|
|
| T |
28867117 |
gtccaatattgaagagtctaacccatgattcctcaacaccaatttcacccaagattgatatg |
28867178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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