View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20855_high_2 (Length: 642)

Name: NF20855_high_2
Description: NF20855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20855_high_2
NF20855_high_2
[»] chr2 (1 HSPs)
chr2 (30-642)||(3017100-3017721)


Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 30 - 642
Target Start/End: Original strand, 3017100 - 3017721
Alignment:
Q  30 aacatatttgttgagccaattttaggatcaaactacaacccaagaatttatttatcaacaacaaattgtttgaaatgtacttgaaagtaaaattctgttt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3017100 aacatatttgttgagccaattttaggatcaaactacaacccaagaatttatttatcaacaacaaattgtttgaaatgtacttgaaagtaaaattctgttt 3017199  T
Q  130 ttattaactaagaaaaaatgattgacttgttgaaaaacttattataatccacaatttagtgcttatatgaattgtgtttctaaagttttgatgtttctca 229  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3017200 ttattaactaagaaaaaattattgacttgttgaaaaacttattataatccacaatttagtgcttatatgaattatgtttctaaagttttgatgtttctca 3017299  T
Q  230 aaatatttcagccaatggattatataatcagcattttaaatttagtggcaatgaaaatctgcagttccctatgggaacaaagaggattgattttctgtgg 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3017300 aaatatttcagccaatggattatataatcagcattttaaatttagtggcaatgaaaatctgcagttccctatgggaacaaagaggattgattttttgtgg 3017399  T
Q  330 tgctgcacatgaaatgatcgtggaatgaaaccatgtcttccctctaaaatggtgtgac-nnnnnnnngatacaatgttataggtatattgtattacctgt 428  Q
    |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||||||||||||||||||||||    
T  3017400 t-atg-acatgaaatgatcgtggaatgaaaccatgtcttccctctaaaatggtgtgacaaaaaaaaagatccaatgttataggtatattgtattacctgt 3017497  T
Q  429 taattttcatacggtcatttcataaggttagtttttagtgtattttaagcaatataattacatta-----------ctttataatgtttcttttttgtgt 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  3017498 taattttcatacggtcatttcataaggttagtttttagtgtattttaagcaatataattacattactttacaatgtctttataatgtttcttttttgtgt 3017597  T
Q  518 tgaaggaaaaattacaaattccaatctggatattcaaaaatcaataaaattattagctaannnnnnnaaaaagtcatttaaattaaactgaactacatgt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||    
T  3017598 tgaaggaaaaattacaaattccaatctggatattcaaaaatcaataaaattattagctaatttttttaataagtcatttaaattaaactgaactacatgt 3017697  T
Q  618 gatataattcatttttggtggtcta 642  Q
    ||||||| |||||||| || |||||    
T  3017698 gatataa-tcattttttgtagtcta 3017721  T

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