View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20857_high_1 (Length: 399)

Name: NF20857_high_1
Description: NF20857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20857_high_1
NF20857_high_1
[»] chr4 (14 HSPs)
chr4 (1-399)||(6627109-6627527)
chr4 (289-399)||(6550722-6550832)
chr4 (295-398)||(6522908-6523011)
chr4 (295-399)||(6593460-6593564)
chr4 (295-398)||(6646733-6646836)
chr4 (295-398)||(6792054-6792157)
chr4 (309-398)||(6503850-6503939)
chr4 (309-398)||(6738198-6738287)
chr4 (274-398)||(6811488-6811612)
chr4 (290-396)||(6832025-6832131)
chr4 (309-394)||(6541762-6541847)
chr4 (308-399)||(6502598-6502689)
chr4 (306-399)||(6769226-6769319)
chr4 (309-389)||(6748552-6748632)
[»] scaffold0729 (1 HSPs)
scaffold0729 (295-398)||(6472-6575)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 6627527 - 6627109
Alignment:
Q  1 tgggtggcatcaatcagcaaagctaccatatatacgggacaaagtgatctcgaagacaggtaattttaaagttgaaacttgattg--------------- 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
T  6627527 tgggtggcatcaatcagcaaagctaccatatatacgggacaaagtgatctcgaagacaggtaattttaaagttgaaacttgattgatatgaaattataat 6627428  T
Q  86 ----ctccatctttatggcttttttaatttacatgtctcaccttatt-atttcctcctttctctccagctatgcacgtgttggacaaatctaatcttctc 180  Q
        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6627427 attactccatctttatggcttttttaatttacatgtctcaccttatttatttcctcctttctctccagctatgcacgtgttggacaaatctaatcttctc 6627328  T
Q  181 ttattcatatattatacaggaacagtagtatatatattgacgatgtagtcgaatgtgttactaatgtgctacgccactggaaagacttctcccgtgcttt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6627327 ttattcatatattatacaggaacagtagtatatatattgacgacgtagtcgaatgtgttactaatgtgctacgccactggaaagacttctcccgtgcttt 6627228  T
Q  281 ctgtccagtgagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggatt 380  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6627227 ctgtccagtgagcataaaatctggtgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggatt 6627128  T
Q  381 ggtaaatcaaccattgccc 399  Q
    |||||||||||||||||||    
T  6627127 ggtaaatcaaccattgccc 6627109  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 6550832 - 6550722
Alignment:
Q  289 tgagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatc 388  Q
    |||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||| ||||||||||||| |    
T  6550832 tgagcataaattctcgtgtgcaagatgtgattcaactattgaaacaatcaaaatctcctctacttatagggatttgggggatggcagggattggtaaaac 6550733  T
Q  389 aaccattgccc 399  Q
    |||||||||||    
T  6550732 aaccattgccc 6550722  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 6523011 - 6522908
Alignment:
Q  295 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 394  Q
    |||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||| |||||||||||||||||||||    
T  6523011 taaaatctggtgcgcatgatgtgattcaactattgaaacaatcaaaatctcctctcgtaataggcatatgggggatggtagggattggtaaatcaaccat 6522912  T
Q  395 tgcc 398  Q
    ||||    
T  6522911 tgcc 6522908  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 6593564 - 6593460
Alignment:
Q  295 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 394  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||   ||||||  ||||||||||||||||||||  |||||||||||||||||||||    
T  6593564 taaaatctggtgtgcaagacgtgattcaactattgaaacaatcaaaaagtcctctcataatagggatatgggggatgacagggattggtaaatcaaccat 6593465  T
Q  395 tgccc 399  Q
    |||||    
T  6593464 tgccc 6593460  T

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Target: chr4; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 6646733 - 6646836
Alignment:
Q  295 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 394  Q
    |||||||||| ||||||||||||||||| || |||||||||||||    |||||| |||||||||||||||||||||| |||||| ||||||||||||||    
T  6646733 taaaatctggtgtgcaagatgtgattcacctgttgaaacaatcaagaagtcctctcctaatagggatatgggggatggcagggatcggtaaatcaaccat 6646832  T
Q  395 tgcc 398  Q
    ||||    
T  6646833 tgcc 6646836  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 6792054 - 6792157
Alignment:
Q  295 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 394  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||   |||| | ||| |||||||||||||||||  |||||||||||||||||||||    
T  6792054 taaaatctggtgtgcaagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccat 6792153  T
Q  395 tgcc 398  Q
    ||||    
T  6792154 tgcc 6792157  T

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Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 6503939 - 6503850
Alignment:
Q  309 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcc 398  Q
    |||||||||||||||||||||||||||||||| |||||||| ||  | |||||||||||||||  |||||||||||||||||||||||||    
T  6503939 caagatgtgattcaactattgaaacaatcaaaatctcctctcctgctggggatatgggggatgacagggattggtaaatcaaccattgcc 6503850  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 6738198 - 6738287
Alignment:
Q  309 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgcc 398  Q
    |||||||||||||||||||||||||||||||| ||| |||| ||  |||||||||||||||||  |||||||||||||||||||||||||    
T  6738198 caagatgtgattcaactattgaaacaatcaaaatcttctctcctgctagggatatgggggatgacagggattggtaaatcaaccattgcc 6738287  T

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Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 6811488 - 6811612
Alignment:
Q  274 gtgctttctgtccagtgagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatggg 373  Q
    ||||||||| | ||| |||  |||||||| |  |||||||||||||||||| ||||||||||||||| | |||||| ||| |||||||||||||||||      
T  6811488 gtgctttctatacagagagtctaaaatctagtttgcaagatgtgattcaacaattgaaacaatcaaaatgtcctctcctactagggatatgggggatgac 6811587  T
Q  374 agggattggtaaatcaaccattgcc 398  Q
    |||||||||||||||| ||||||||    
T  6811588 agggattggtaaatcagccattgcc 6811612  T

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Target: chr4; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 290 - 396
Target Start/End: Original strand, 6832025 - 6832131
Alignment:
Q  290 gagcataaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatca 389  Q
    ||||||||| || || | ||||||||||||||||||||||||||| ||||| ||||||||  || |||||||||||||||||  ||||||||||||||||    
T  6832025 gagcataaattcaggggcgcaagatgtgattcaactattgaaacagtcaaaatctcctctcatactagggatatgggggatgccagggattggtaaatca 6832124  T
Q  390 accattg 396  Q
    | |||||    
T  6832125 agcattg 6832131  T

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Target: chr4; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 309 - 394
Target Start/End: Complemental strand, 6541847 - 6541762
Alignment:
Q  309 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 394  Q
    |||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||  ||||||||| |||||||||||    
T  6541847 caagatgtgattcaactattgaaacaatcaaaatgtcctcttttagtagggatatgggggatgacagggattggcaaatcaaccat 6541762  T

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Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 399
Target Start/End: Complemental strand, 6502689 - 6502598
Alignment:
Q  308 gcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgccc 399  Q
    ||||||||||||||||||||||||||||||||  |||||||| ||  ||||||| |||||||||  ||||||| ||||||||||||||||||    
T  6502689 gcaagatgtgattcaactattgaaacaatcaagatctcctctcctgctagggatgtgggggatgtcagggattagtaaatcaaccattgccc 6502598  T

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Target: chr4; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 306 - 399
Target Start/End: Original strand, 6769226 - 6769319
Alignment:
Q  306 gtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccattgccc 399  Q
    |||||||||||||||||| |||||||||||||||| |||||| | ||||| ||||| |||||||||  ||||||||||||| | ||||||||||    
T  6769226 gtgcaagatgtgattcaattattgaaacaatcaaaatctcctttcctaattgggatttgggggatgacagggattggtaaaactaccattgccc 6769319  T

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Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 6748552 - 6748632
Alignment:
Q  309 caagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatca 389  Q
    |||||||||||||||||||| |||||||| || || ||||| ||| | |||||||||||||||| |||| |||||||||||    
T  6748552 caagatgtgattcaactattaaaacaatcgaaatcccctctcctactcgggatatgggggatggcaggggttggtaaatca 6748632  T

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Target: scaffold0729 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 6575 - 6472
Alignment:
Q  295 taaaatctggcgtgcaagatgtgattcaactattgaaacaatcaaactctcctcttctaatagggatatgggggatgggagggattggtaaatcaaccat 394  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||   |||| | ||| |||||||||||||||||  |||||||||||||||||||||    
T  6575 taaaatctggtgtgcaagatgtgattcaactattgaaacgatcaaaaagtcctatcctactagggatatgggggatgacagggattggtaaatcaaccat 6476  T
Q  395 tgcc 398  Q
    ||||    
T  6475 tgcc 6472  T

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