View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20857_high_10 (Length: 321)
Name: NF20857_high_10
Description: NF20857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20857_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 32 - 307
Target Start/End: Complemental strand, 6627928 - 6627653
Alignment:
| Q |
32 |
tctgcgaccaagacaaagacctgcattcttttgttttcagtatctataatgctcttagtagaaaagctggagttgatgttttctgggagaatgagaggga |
131 |
Q |
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| T |
6627928 |
tctgcgaccaagacaaagacctgcattcttttgttttcagtatctataatgctcttagtagaaaagctggagttgatgttttctgggagaatgagaggga |
6627829 |
T |
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| Q |
132 |
tggctatggagatcgagaaaaaccaacctctgtgctcaatgttataagagattgcaaagtttttgtaattgtattttcaagagactatttcaattcaagg |
231 |
Q |
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| T |
6627828 |
tggctatggagatcgagaaaaaccaacctctgtgctcaatgttataagagattgcaaagtttttgtaattgtattttcaagagactatttcaattcaagg |
6627729 |
T |
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| Q |
232 |
tcgtgtcttcatgaatttnnnnnnntaactgagtgttgccgaaccaaagatgatcttatggttctacctgtgttct |
307 |
Q |
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| T |
6627728 |
tcgtgtcttcatgaatttaaaaaaataactgagtgttgccgaaccaaagatgatcttatggttctacctgtgttct |
6627653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 6646150 - 6646230
Alignment:
| Q |
169 |
aatgttataagagattgcaaagtttttgtaattgtattttcaagagactatttcaattcaaggtcgtgtcttcatgaattt |
249 |
Q |
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| T |
6646150 |
aatgttatagaagattgcaaagttgctgtaatagtattttcaagaaattatgttaattcaagatcgtgtcttcaagaattt |
6646230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 6551578 - 6551502
Alignment:
| Q |
70 |
agtatctataatgctcttagtagaaaagctggagttgatgttttctgggagaatgagagggatggctatggagatcg |
146 |
Q |
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| T |
6551578 |
agtatctataagactcttagcataaaagctggatttgttgttttctgggaggaaaagaggcttggttatggagatcg |
6551502 |
T |
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