View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20857_high_2 (Length: 359)
Name: NF20857_high_2
Description: NF20857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20857_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 9674370 - 9674527
Alignment:
| Q |
118 |
tttcttaattatacataaaacctatatctaaaaagaaataatttagccaaatgttaacattttttaagattagattatgaattttgatttctaatatcaa |
217 |
Q |
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| T |
9674370 |
tttcataaatatacataaa-cctatatctaaaaagaactattttagccaaatgttaacatttttaaagattaaattatgaatattcatttctaatatcaa |
9674468 |
T |
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| Q |
218 |
atagatcttcatctatttcttaag-tttcagttta-ttgtttcagtattttatgacaaa |
274 |
Q |
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| T |
9674469 |
atagatcttcatatatttcttaagttttttgtttatttgtttcggtattttatgacaaa |
9674527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 9674767 - 9674834
Alignment:
| Q |
281 |
taaggaactagaaagagtgcatcatacatgaaagctccaattcaacaaattggacagactccatctgt |
348 |
Q |
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| T |
9674767 |
taaggaactagaaagagtgcatcatacacaaaagctccaattcaacaaattggacagactccatctgt |
9674834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 9683965 - 9684042
Alignment:
| Q |
147 |
aaaaagaaataatttagccaaatgttaacattttttaagattagattatgaattttgatttctaatatcaaatagatc |
224 |
Q |
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| T |
9683965 |
aaaaagaactaatttagcatattattgacatttttaaagataaaattgtgaattttcatttctaatatcaaatagatc |
9684042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 9690040 - 9690078
Alignment:
| Q |
186 |
attagattatgaattttgatttctaatatcaaatagatc |
224 |
Q |
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| T |
9690040 |
attaaattatgaattttcatttctaatatcaaatagatc |
9690078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 344
Target Start/End: Original strand, 9691906 - 9691968
Alignment:
| Q |
282 |
aaggaactagaaagagtgcatcatacatgaaagctccaattcaacaaattggacagactccat |
344 |
Q |
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| T |
9691906 |
aaggaactagaaagagcacattatacatgaaagctctagttcgacaaattgatcagactccat |
9691968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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