View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20857_high_3 (Length: 359)
Name: NF20857_high_3
Description: NF20857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20857_high_3 |
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| [»] scaffold0907 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 59 - 354
Target Start/End: Original strand, 42945721 - 42946017
Alignment:
| Q |
59 |
tctaacaataacaccatgatggtaaggtgcattcagctgaagaaaacagttcaaaagctctctaaggtcatctttagagtatatttcattctccaatatc |
158 |
Q |
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| T |
42945721 |
tctaacaataacaccatgatggtaaggtgcattcagctgaagaaaacagttcaaaagctctctaaggtcatctttagagtatatttcattctccaatatc |
42945820 |
T |
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| Q |
159 |
-tttgaagcatggaatgcctgaaatcaagataaggatcttcagaatctttctccaccgccacgccttctcctccggctcttcctaaaccacctactctcc |
257 |
Q |
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| T |
42945821 |
atttgaagcatggaatgcctgaaatcaagataaggatcttcagaatctttctccaccgccacgccttctcctccggctcttcctaaaccacctactctcc |
42945920 |
T |
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| Q |
258 |
tttggtcctttgcataggcatctgagtcagagaagtttgaggaatagtagggtgaaaatgtggtggcagtgtttgtggtcgtggtgtctgtggtgct |
354 |
Q |
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| T |
42945921 |
tttggtcctttgcataggcatctgagtcagaaaagtttgaggaatagtagggtgaaaatgtggtggcagtgtttgtggttgtggtgtttggggtgct |
42946017 |
T |
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Target: scaffold0907 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0907
Description:
Target: scaffold0907; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 89 - 213
Target Start/End: Original strand, 2914 - 3039
Alignment:
| Q |
89 |
attcagctgaagaaaacagttcaaaagctctctaaggtcatctttagagtatatttcattctccaatatc-tttgaagcatggaatgcctgaaatcaaga |
187 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| | || | ||| ||||| | ||||||||| |
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| T |
2914 |
attcagctgaagaaaacagttcaaaagctctctaagatcatctttagaatatatctcattctccaatatcatctgcaacattgaatgtcgaaaatcaaga |
3013 |
T |
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| Q |
188 |
taaggatcttcagaatctttctccac |
213 |
Q |
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| T |
3014 |
taagggtcatcagaatctttctccac |
3039 |
T |
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