View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20857_high_7 (Length: 329)
Name: NF20857_high_7
Description: NF20857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20857_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 35907609 - 35907901
Alignment:
| Q |
8 |
tagattattctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcagggctgtgcaagttatcgataaa |
107 |
Q |
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| T |
35907609 |
tagattcttctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcagggctgcgcaagttatcgataaa |
35907708 |
T |
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| Q |
108 |
agcaccaaaaggggtgtctgagaccgataaaaattcatgtgtgattgatatgaactgtggcacatgtgaaggttttggtgaaaatttggacgacgaaatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
35907709 |
agcaccaaaaggggtgtctgagaccgataaaaattcatgtgtgattgatatgaactgtggcacatgtgaaggttttggtgaaaatttggatgacgaaatg |
35907808 |
T |
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| Q |
208 |
atttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactccaaatattgctgataaaagtacaggtttgatt |
300 |
Q |
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| T |
35907809 |
atttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactccaaatattgctgataaaagtacaggtttgatt |
35907901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 35915257 - 35915338
Alignment:
| Q |
45 |
tggagataatagaaaattggaagctaaaactaatgaatcagggctgtgcaagttatcgataaaagcaccaaaaggggtgtct |
126 |
Q |
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| T |
35915257 |
tggagataatagaaaattggaagctaaaactaatgaaccaggactgcacaagttattgattaaagaaccaaaaggggtgtct |
35915338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 300
Target Start/End: Original strand, 35915371 - 35915496
Alignment:
| Q |
185 |
gtgaaaatttggacgacgaaatgatttgtag-gatttgccatctggcctctgggcaaccgttagaagc---------aactgctgttggcactccaaata |
274 |
Q |
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| T |
35915371 |
gtgaaaatttggatgatgaaatgatttgtagagatttctcatctggactctgagcaaccgttagaagcaagtcaagcaactgctgttggcactccacaca |
35915470 |
T |
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| Q |
275 |
ttgctgataaaagtacaggtttgatt |
300 |
Q |
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|||| |||||| ||||| ||||||| |
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| T |
35915471 |
gtgctaataaaaatacagatttgatt |
35915496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 33911002 - 33911294
Alignment:
| Q |
8 |
tagattattctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcagggctgtgcaagttatcgataaa |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
33911002 |
tagattcttctgctcaagttgaacgtgtcactgtcaatggagataatagaaaattggaagctaaaactaatgaatcagggctgcgcaagttatcaataaa |
33911101 |
T |
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| Q |
108 |
agcaccaaaaggggtgtctgagaccgataaaaattcatgtgtgattgatatgaactgtggcacatgtgaaggttttggtgaaaatttggacgacgaaatg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33911102 |
agcaccaaaaggggtgtctgagaccgataaaaattcatgtgtgattgatatgaactgtggcacatgtgaaggttttggtgaaaatttggatgacgaaatg |
33911201 |
T |
|
| Q |
208 |
atttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactccaaatattgctgataaaagtacaggtttgatt |
300 |
Q |
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| T |
33911202 |
atttgtaggatttgccatctggcctctgggcaaccgttagaagcaactgctgttggcactccaaatattgctgataaaagtacaggtttgatt |
33911294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 41140766 - 41140812
Alignment:
| Q |
39 |
tgtcaatggagataatagaaaattggaagctaaaactaatgaatcag |
85 |
Q |
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| T |
41140766 |
tgtcaatggagataatagaagattggaagctaaaactaatgaatcag |
41140812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 5072979 - 5073025
Alignment:
| Q |
115 |
aaaggggtgtctgagaccgataaaaattcatgtgtgattgatatgaa |
161 |
Q |
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| T |
5072979 |
aaaggggtgtctgaaactgataaagatttatgtgtgattgatatgaa |
5073025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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