View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20857_high_8 (Length: 326)
Name: NF20857_high_8
Description: NF20857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20857_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 31733398 - 31733101
Alignment:
| Q |
9 |
atcataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtnnnnn |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31733398 |
atcataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctgaacacatagcataagatcctaccaatttcacagcatagttcagtcaaaa |
31733299 |
T |
|
| Q |
109 |
nnnnnctcaaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaa |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31733298 |
aaaaactccaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacaaataaaaactccaaa |
31733199 |
T |
|
| Q |
209 |
taagcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgatgatgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31733198 |
taagcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgaagatgt |
31733101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 123 - 293
Target Start/End: Complemental strand, 31735962 - 31735793
Alignment:
| Q |
123 |
acaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaataagcaaaaccaca |
222 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
31735962 |
acaccacaaaaacttgatgaaactccaattcaggatcacaacatatagtcatacaaaggtcaaatgccacaactaaaaactccaaataagcaaaacaaca |
31735863 |
T |
|
| Q |
223 |
cagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacac-ttgtagtgtcacgttttt |
293 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||| ||| |||||||| || ||| ||||||| |||||| |
|
|
| T |
31735862 |
cag--gagtacaaaacaaaaggaatgagtagaataaaaacaattgcctcagacgttgcagtgtcatgttttt |
31735793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 31736066 - 31736020
Alignment:
| Q |
10 |
tcataggcaggatcgagaaggggtcacaatatcacaaatcgcgggat |
56 |
Q |
| |
|
|||||||||||| | ||||||| ||||||||||||||||| |||||| |
|
|
| T |
31736066 |
tcataggcaggaccaagaagggatcacaatatcacaaatcacgggat |
31736020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 6498389 - 6498092
Alignment:
| Q |
9 |
atcataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtnnnnn |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498389 |
atcataggcaggatcaagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtaaaaa |
6498290 |
T |
|
| Q |
109 |
nnnnnctcaaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaa |
208 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6498289 |
aaaaactccaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacaaataaaaactccaaa |
6498190 |
T |
|
| Q |
209 |
taagcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgatgatgt |
306 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6498189 |
taagcaaaacaacacagcagagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgaagatgt |
6498092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University