View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20858_high_2 (Length: 358)
Name: NF20858_high_2
Description: NF20858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20858_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 1428868 - 1429197
Alignment:
| Q |
14 |
gaagaccagctgagcaccaccacagatacggtttctctggtggcgagattggagaagataccaacgagcatagatatggagacaaagcattaaaatgatg |
113 |
Q |
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| T |
1428868 |
gaagaccagctgagcacgatgacggatacggtttctccggtggcgagattggagaagataccaacgagcataaatatggagacaaagcattaaaatgatg |
1428967 |
T |
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| Q |
114 |
ttgaaaaagagaaggactttagcgtagatcatgattttgctgttgcgattgtaaccctttccgccataatcgttgggaggcttttaatctttggtgaatt |
213 |
Q |
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| T |
1428968 |
ttgaaaaagagaaggactttagcgtagatcatgattttgctgttgcgattgtaaccctttgcgccataatcgttgggaggcttttaatctttggtgaatt |
1429067 |
T |
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| Q |
214 |
tgggtatgggttcaaaacctgaaacc--------------aatcccctcgtggactgttgattccgccggtgtaagcttcgaattgatcgaagggttgtt |
299 |
Q |
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| T |
1429068 |
tgggtatgggttcaaaacctgaaaccaatccccttgaccgaatccccttgtggaccgttgattccgcccgtgtaaacttcgaattgatcgaagggttgtt |
1429167 |
T |
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| Q |
300 |
ctgcgccataggaggagcaggagcagaatg |
329 |
Q |
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| T |
1429168 |
ctgcgccgcaggaggagcaggagcagaatg |
1429197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 39 - 227
Target Start/End: Original strand, 13999144 - 13999332
Alignment:
| Q |
39 |
atacggtttctctggtggcgagattggagaagataccaacgagcatagatatggagacaaagcattaaaatgatgttgaaaaagagaaggactttagcgt |
138 |
Q |
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| T |
13999144 |
atacggtttctccggcgacgagattggagaaggtaccaacgagcgtaaatatggagacaaagcattaatactatgatgaagaagagaaggataatggcac |
13999243 |
T |
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| Q |
139 |
agatcatgattttgctgttgcgattgtaaccctttccgccataatcgttgggaggcttttaatctttggtgaatttgggtatgggttca |
227 |
Q |
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| T |
13999244 |
agagcatgattttgccgttgagattgtaaccttttgggtcaaaatcgttgggagggttttgatctctggggaatttgggtatgggttca |
13999332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 11799721 - 11799651
Alignment:
| Q |
249 |
gtggactgttgattccgccggtgtaagcttcgaattgatcgaagggttgttctgcgccataggaggagcag |
319 |
Q |
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| T |
11799721 |
gtggaccgttgattccgatggtgtaagtttcgaattgatcgaagtgctgttctgcgccgcatgaggagcag |
11799651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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