View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20858_high_3 (Length: 335)

Name: NF20858_high_3
Description: NF20858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20858_high_3
NF20858_high_3
[»] chr4 (12 HSPs)
chr4 (63-306)||(3762496-3762739)
chr4 (50-300)||(3776564-3776814)
chr4 (63-299)||(3780890-3781126)
chr4 (63-288)||(3751517-3751742)
chr4 (63-295)||(3745700-3745932)
chr4 (50-305)||(3755371-3755626)
chr4 (50-305)||(3766899-3767154)
chr4 (225-305)||(3771304-3771384)
chr4 (136-181)||(3851509-3851554)
chr4 (63-187)||(3770675-3770799)
chr4 (138-200)||(3789113-3789175)
chr4 (63-200)||(3844991-3845128)
[»] chr7 (1 HSPs)
chr7 (63-299)||(25985387-25985623)
[»] scaffold0433 (1 HSPs)
scaffold0433 (63-200)||(10020-10157)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 3762496 - 3762739
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3762496 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatact 3762595  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 262  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3762596 ttccttcaatgaaagcaaaattcactgtcataagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagctcttccaacaagtttagaact 3762695  T
Q  263 cagttctggtcctaaagtcaaagggttgtcaatcatgcggacta 306  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  3762696 cagttcgggtcctaaagtcaaagggttgtcaatcatgcggacta 3762739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 50 - 300
Target Start/End: Original strand, 3776564 - 3776814
Alignment:
Q  50 agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagta 149  Q
    |||| ||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||  |||||||||||||||||||||| |||    
T  3776564 agcataacctctagcaaatctgaaaagtccactaccaccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggta 3776663  T
Q  150 ctcccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa 249  Q
    || |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||||    
T  3776664 ctaccattatactttccttcaatgaaagcaaaattcattgtcataagaaaacctatttcttcctgtgaagcagatgcatagaatccttgagctctaccaa 3776763  T
Q  250 caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgc 300  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  3776764 caagtttagaactcaattcgggtcctaaagttaaagggttgtcaatcatgc 3776814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 63 - 299
Target Start/End: Original strand, 3780890 - 3781126
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  |||||  || ||||||||||| | |||||||| |||||| ||||||||||    
T  3780890 gcaaatctgaaaagtccactaccaccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatact 3780989  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 262  Q
    |||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||    
T  3780990 ttccttcaatgaaagcaaaattcattgtcataagaaaacctagttcttcttgtgaagcagatgcatagaatccttgagctcttccaacaagcttagaact 3781089  T
Q  263 cagttctggtcctaaagtcaaagggttgtcaatcatg 299  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3781090 cagttctggtcctaaagttaaagggttgtcaatcatg 3781126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 63 - 288
Target Start/End: Original strand, 3751517 - 3751742
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    |||||||||||||||||||| ||||||| || ||||||||| ||| ||||||||| | | | ||||||||||||||||||||| ||||| ||||||||||    
T  3751517 gcaaatctgaaaagtccactaccaccaataataggcatctctctagccttattaataccagaattcctccccaagatagtaattgtactaccattatact 3751616  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 262  Q
    |||||||||| |||||||| ||||| | ||  |||||||| |  || || |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  3751617 ttccttcaatgaaagcaaagttcatagccatgagaaaaccaaaatcatcttgtgatgcagatgcatagaaaccttgagcttttccaacaagcttagaact 3751716  T
Q  263 cagttctggtcctaaagtcaaagggt 288  Q
    || || |||||||| |||||||||||    
T  3751717 caattgtggtcctatagtcaaagggt 3751742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 63 - 295
Target Start/End: Original strand, 3745700 - 3745932
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    |||||||| ||| ||||  | |||||||||| |||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||    
T  3745700 gcaaatctaaaacgtccggtaccaccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatact 3745799  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 262  Q
    |||||||||| ||||||||| |||| | ||  |  ||||  |  || |||| ||||||||||||||| || |||||||||||||||||||| ||||||||    
T  3745800 ttccttcaatgaaagcaaaagtcatagccatgaacaaactaaactcatcctttgatgcagatgcatacaacccttgagcttttccaacaagcttagaact 3745899  T
Q  263 cagttctggtcctaaagtcaaagggttgtcaat 295  Q
    || || |||||||||||| ||||||||||||||    
T  3745900 catttttggtcctaaagttaaagggttgtcaat 3745932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 50 - 305
Target Start/End: Original strand, 3755371 - 3755626
Alignment:
Q  50 agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagta 149  Q
    |||| ||||| | ||||||||||||| |||||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||    
T  3755371 agcataacctctagcaaatctgaaaaatccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgta 3755470  T
Q  150 ctcccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa 249  Q
    || |||||||||||||||||| | |||||||||||||| | || ||| ||| | | ||| || |   |||||||||||||||||||||||||||||||||    
T  3755471 cttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaa 3755570  T
Q  250 caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggact 305  Q
    |||  |||||| |||  | |||||||||||| ||||||||||| ||||||||||||    
T  3755571 caatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggact 3755626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 50 - 305
Target Start/End: Original strand, 3766899 - 3767154
Alignment:
Q  50 agcagaacctgtggcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagta 149  Q
    |||| ||||| | ||||||||||||| |||||| |||||||  ||||||||||| ||||| |||| || | | | |||||| ||||| |||||||  |||    
T  3766899 agcataacctctagcaaatctgaaaactccactaccaccaatcacaggcatctctctaactttatgaaaaacagcattccttcccaatatagtaagtgta 3766998  T
Q  150 ctcccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaa 249  Q
    || |||||||||||||||||| | |||||||||||||| | || ||| ||| | | ||| || |   |||||||||||||||||||||||||||||||||    
T  3766999 cttccattatactttccttcagtaaaagcaaaattcatagccataagcaaatcaacttcatctttgcatgcagatgcatagaatccttgagcttttccaa 3767098  T
Q  250 caagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggact 305  Q
    |||  |||||| |||  | |||||||||||| ||||||||||| ||||||||||||    
T  3767099 caatcttagaattcaactgtggtcctaaagttaaagggttgtcgatcatgcggact 3767154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 3771304 - 3771384
Alignment:
Q  225 gcatagaatccttgagcttttccaacaagtttagaactcagttctggtcctaaagtcaaagggttgtcaatcatgcggact 305  Q
    |||| ||| ||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  3771304 gcatcgaacccttgagattttccaacaagcttagaactcagttctggtcctaaagttaaagggttgtcgatcatgcggact 3771384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 3851509 - 3851554
Alignment:
Q  136 agatagtaatagtactcccattatactttccttcaatcaaagcaaa 181  Q
    |||||||||| ||||||||||||||||||||||||| ||| |||||    
T  3851509 agatagtaatggtactcccattatactttccttcaaacaaggcaaa 3851554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 3770675 - 3770799
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    |||||||||||||||||| | |||||||  | ||||||||| | ||| |||| || | |   |||||| ||||| |||||||   |||| ||||||||||    
T  3770675 gcaaatctgaaaagtccaataccaccaatcataggcatctctcaaactttatgaaaaacaacattccttcccaaaatagtaagtttacttccattatact 3770774  T
Q  163 ttccttcaatcaaagcaaaattcat 187  Q
    |||||||| | ||| ||||||||||    
T  3770775 ttccttcagtaaaaacaaaattcat 3770799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 3789113 - 3789175
Alignment:
Q  138 atagtaatagtactcccattatactttccttcaatcaaagcaaaattcattgtcacaagaaaa 200  Q
    |||||||| || || ||||||||||||||||||| ||||||||| |||||  ||| |||||||    
T  3789113 atagtaatggtgcttccattatactttccttcaaacaaagcaaagttcataatcataagaaaa 3789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 3844991 - 3845128
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    |||||||| ||||| ||||| |||||||  |||||||| || |||||||| | |   ||   ||| || |||||||||||||| || || |||||||| |    
T  3844991 gcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatatt 3845090  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaa 200  Q
    | |||||||  || |||||||||||| ||| |||||||    
T  3845091 tcccttcaaataatgcaaaattcattatcataagaaaa 3845128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 299
Target Start/End: Complemental strand, 25985623 - 25985387
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    ||||||| |||||| ||||| |||||||  | |||||| ||||||||||||| |  | | |||||||||||||| ||||| || || || ||||| ||||    
T  25985623 gcaaatcggaaaagaccactaccaccaattataggcatttccctaaccttatcagaaacaggattcctccccaaaatagtgatggtgctaccattgtact 25985524  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaacctatttcttcctgtgatgcagatgcatagaatccttgagcttttccaacaagtttagaact 262  Q
    | |||||||| | |||||||||||| | ||  | ||   |||  ||    |||||||  || |||||||||||||| ||||||||||| | ||| |||||    
T  25985523 tcccttcaattatagcaaaattcatagccatgataaggtctacctcactttgtgatgttgaggcatagaatccttgtgcttttccaaccaatttggaact 25985424  T
Q  263 cagttctggtcctaaagtcaaagggttgtcaatcatg 299  Q
    || ||  |||||||| || |||||||| |||||||||    
T  25985423 caattgaggtcctaaggttaaagggttctcaatcatg 25985387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 10157 - 10020
Alignment:
Q  63 gcaaatctgaaaagtccactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactcccattatact 162  Q
    |||||||| ||||| ||||| |||||||  |||||||| || |||||||| | |   ||   ||| || |||||||||||||| || || |||||||| |    
T  10157 gcaaatctaaaaagcccacttccaccaatcacaggcatttctctaaccttttcatatgcatcatttcttcccaagatagtaattgtgcttccattatatt 10058  T
Q  163 ttccttcaatcaaagcaaaattcattgtcacaagaaaa 200  Q
    | |||||||  || |||||||||||| ||| |||||||    
T  10057 tcccttcaaataatgcaaaattcattatcataagaaaa 10020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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