View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20858_high_4 (Length: 320)
Name: NF20858_high_4
Description: NF20858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20858_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 480712 - 480499
Alignment:
| Q |
30 |
gtatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataa |
129 |
Q |
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| T |
480712 |
gtatcataatgaaaattcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataa |
480613 |
T |
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| Q |
130 |
tgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctgatgaaggtat |
229 |
Q |
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| T |
480612 |
tgtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctgatgaaggtat |
480513 |
T |
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| Q |
230 |
aacatgacaaaggt |
243 |
Q |
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||||||||| |||| |
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| T |
480512 |
aacatgacagaggt |
480499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 475226 - 475054
Alignment:
| Q |
53 |
catactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatg |
152 |
Q |
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| T |
475226 |
catactgcatataaagcgcaaccaaattgaagtagagaattaattttccatgcattaaggtctggctctaagaatagtgtgactaatgctgattgtaatg |
475127 |
T |
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| Q |
153 |
tagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctgatgaag |
225 |
Q |
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| T |
475126 |
ttgccatgaaacacatccatgctgaaagtgataaataattgggatgacttgcataagctggaacctgaagaag |
475054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 468691 - 468516
Alignment:
| Q |
44 |
aatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttg |
143 |
Q |
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| T |
468691 |
aatcatccacatacagcatataaagcgctaccaaattgaagcagagacttaatcttccatccattaaagtctggctctaagaatagtgtgactaatgctg |
468592 |
T |
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| Q |
144 |
attgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctg |
219 |
Q |
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| T |
468591 |
attgtaatgttgccatgaaacacatccatgcacaaagtgataagtaattgggatgacttgcataagctggaacctg |
468516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 219
Target Start/End: Complemental strand, 457556 - 457391
Alignment:
| Q |
54 |
atactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataatgtgactactgttgattgaaatgt |
153 |
Q |
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| T |
457556 |
atactgcatataaagtgcacccaaattgaagtagagaattaattttccatgcattcaggtctggctccaagaataacgtcagtattgatgattgtaatgt |
457457 |
T |
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| Q |
154 |
agacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctg |
219 |
Q |
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| T |
457456 |
tgaaattaaacacatccaagctgacaatgatatataattaggatggcttgcgtaagctggaacctg |
457391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 31 - 231
Target Start/End: Complemental strand, 449308 - 449108
Alignment:
| Q |
31 |
tatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataat |
130 |
Q |
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|||||| ||||||| |||||||||||||||||||||| ||||||| | ||||| | ||| || |||||||| |||| | || || || | ||||| | |
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| T |
449308 |
tatcatcatgaaaattcatccacatactgcatataaagtgcaaccgagttgaactagagatttaatcttccatgcattcaagtttggctcaaagaatagt |
449209 |
T |
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| Q |
131 |
gtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctgatgaaggtata |
230 |
Q |
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| T |
449208 |
gccactattgatgattgtaatgttgacattatacacatccaggctgacaatgataaataattaggatggcttgcgtaagatggaacctgaggaagatata |
449109 |
T |
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| Q |
231 |
a |
231 |
Q |
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| T |
449108 |
a |
449108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 480485 - 480434
Alignment:
| Q |
263 |
agtaaatagaataactagttttgattacatttatctatcttagaataatatag |
315 |
Q |
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| T |
480485 |
agtaaatagaataactagttttgattacatttatct-tattagaataatatag |
480434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 220
Target Start/End: Original strand, 27490023 - 27490212
Alignment:
| Q |
31 |
tatcataatgaaaaatcatccacatactgcatataaaatgcaaccaaattgaagcaaagaattgatcttccaaacatttaggtctgattccacgaataat |
130 |
Q |
| |
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|||||| ||| || ||||||||||||||| |||||||||||||||||||||||| | |||| | |||||||| ||||||| |||| |||| ||||| | |
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| T |
27490023 |
tatcatcatggaagatcatccacatactgaatataaaatgcaaccaaattgaagtagagaagtaatcttccacgcatttagatctgcctccatgaatagt |
27490122 |
T |
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| Q |
131 |
gtgactactgttgattgaaatgtagacattaaacacatccatgctgtaaatgacaagtaattaggatggcttgcataagctggaacctga |
220 |
Q |
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| T |
27490123 |
gtcactagtgatgattgtaatgttgccattaaacacatccaggctgaaagagataaggtatttggatggcttgcatatgctggaacctga |
27490212 |
T |
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