View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20858_high_5 (Length: 312)
Name: NF20858_high_5
Description: NF20858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20858_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 30 - 304
Target Start/End: Complemental strand, 194193 - 193927
Alignment:
| Q |
30 |
ctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttcttctaaatctctagcttttctcatctctttg |
129 |
Q |
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| T |
194193 |
ctcatcccaaccatcttcaaaccattcaaatctaataaatccttttcctatcacaacttccttctcttcttctaaatctctagcttttctcatctctttg |
194094 |
T |
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| Q |
130 |
ccccagcttttctggtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttcctcagcctcaatagagggttcacgtgtccttgcgccgggaac |
229 |
Q |
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| T |
194093 |
ccccagc-tttctagtgtgcaaaaagtcactgccaaaccttttgaggccaacagcttccccagcctcaatagagggttcacgtgtccttgcgccgggaac |
193995 |
T |
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| Q |
230 |
gatacaacatacaaggaacacatgctctacaatatcattatcacaccccatttttcctttaatctcattcatctc |
304 |
Q |
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| T |
193994 |
g-------atacaaggaacacatgctctacaatatcattatcacaccccattttccctttaatctcattcatctc |
193927 |
T |
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