View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20858_high_7 (Length: 302)
Name: NF20858_high_7
Description: NF20858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20858_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 51741559 - 51741273
Alignment:
| Q |
15 |
agacatcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaa |
114 |
Q |
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| T |
51741559 |
agacatcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaa |
51741460 |
T |
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| Q |
115 |
agagtacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51741459 |
agagtacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctg |
51741360 |
T |
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| Q |
215 |
ttataaaaatcaaccataaaagtattgtcaatctcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatat |
301 |
Q |
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| T |
51741359 |
ttataaaaatcaaccataaaagtattgtcaatctcattcacagtctcttcccctgataaagacattaaaatttctttttcatcatat |
51741273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 10202356 - 10202078
Alignment:
| Q |
19 |
atcaccaaccgttccaagttctggacattcttcccaatcactcatacctattgttaatgaactatttcctctaccacctcttcctactataaacaaagag |
118 |
Q |
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||||||||| | |||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
10202356 |
atcaccaactgatccaagttctggacattcctcccaatcactcatatctattgttagtgaactatttcctctaccaccctttccaactataaacaaagag |
10202257 |
T |
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| Q |
119 |
tacaagtccccaatctctttcaaagattccactgtttgtgttccatctttcacaaacttttccacatatccaatctgtcctgaagccacatacctgttat |
218 |
Q |
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|| | ||| ||||||||||||||| |||| ||||||||| |||||| |||||||| ||||| ||||||||||| | ||| ||||| |||| |||||||| |
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| T |
10202256 |
tatatgtcaccaatctctttcaaacattcaactgtttgtcttccattcttcacaaaattttctacatatccaatttttcccgaagcgacatgcctgttat |
10202157 |
T |
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| Q |
219 |
aaaaatcaaccataaaagtattgtcaatc---tcattcacagtctcttcccctgataaagacattaaaatttctttttc |
294 |
Q |
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||||||||||||| || ||||||||||| |||||| ||||||||||||| || || ||||||||||| |||||||| |
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| T |
10202156 |
aaaaatcaaccatgaagttattgtcaatctcatcattcgcagtctcttccccggacaacgacattaaaatctctttttc |
10202078 |
T |
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