View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20859_high_1 (Length: 563)
Name: NF20859_high_1
Description: NF20859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20859_high_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 25450628 - 25450871
Alignment:
| Q |
20 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
119 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25450628 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttaccttattcatgt |
25450727 |
T |
|
| Q |
120 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
219 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25450728 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25450827 |
T |
|
| Q |
220 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
263 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25450828 |
acagccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25450871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 25446065 - 25446308
Alignment:
| Q |
20 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
119 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
25446065 |
gacatcatcatcactgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagtcagtacaattgacttaccttattcatgt |
25446164 |
T |
|
| Q |
120 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25446165 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
25446264 |
T |
|
| Q |
220 |
acagccgtgtgtaaaatacagcagaaatatattagcctttgtta |
263 |
Q |
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||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
25446265 |
acaaccgtgtgtaaaatatagcagaaatatattagcctttgtta |
25446308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 270
Target Start/End: Complemental strand, 2607085 - 2606833
Alignment:
| Q |
20 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| |
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| T |
2607085 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaattgtcattagttagtacaattgacttaccttattcatgt |
2606986 |
T |
|
| Q |
120 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
219 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2606985 |
acaattgttttgctctactgtaattccaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgt |
2606886 |
T |
|
| Q |
220 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttata |
270 |
Q |
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|||||| |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
2606885 |
acagccatgtgtaaaatatatagcagaaatatattagcctttgttattttata |
2606833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 470
Target Start/End: Original strand, 47367403 - 47367472
Alignment:
| Q |
399 |
ttcaagtttcaagcaatcaattaaaactcaatatatatcatagctttacattttaccagtattcatataatc |
470 |
Q |
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|||| ||||||||||||||| ||||||||| ||||||||||| | |||||||||| || |||||||||||| |
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| T |
47367403 |
ttcatgtttcaagcaatcaactaaaactca--atatatcatagttgtacattttactagcattcatataatc |
47367472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 285 - 563
Target Start/End: Original strand, 38489615 - 38489893
Alignment:
| Q |
285 |
ctcattaatttcatcggtcattaaaatccactttgttgtgacaaacaaacattgttcaatactttatgcctacatagacatcaaatgttatattttgaca |
384 |
Q |
| |
|
||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38489615 |
ctcattaatttcatcagtcattgaaatcctctttgttttgacaaacaaacattgttcaatactttatgcctacatagacatcgaatgttatattttgaca |
38489714 |
T |
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| Q |
385 |
gaacctggatttcattcaagtttcaagcaatcaattaaaactcaatatatatcatagctttacattttaccagtattcatataatcgaaaggataatttg |
484 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38489715 |
gaacctagatttcattcaagtttcaagcaatcaattaaaactcaaaatatatcatagctttacattttaccagtattcatataatcgaaaggagaatttg |
38489814 |
T |
|
| Q |
485 |
attacacggatttgatattttttcactgaacaaagttatataatataacacccnnnnnnnttcatacataaaaaaccac |
563 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
38489815 |
attacacggatttgttattttttcactgagcaaagttatataatataactcccaaaaaaattcatacataaaaaaccac |
38489893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 31901369 - 31901622
Alignment:
| Q |
20 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
31901369 |
gacatcatcatcattgttgacttcccttaattcatgcataactattattgtttatgatcaactgtcattagtcagtaaagttgacttaccttattcatgt |
31901468 |
T |
|
| Q |
120 |
acaattgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31901469 |
acaattgttttgctctactgtaattcccattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgt |
31901568 |
T |
|
| Q |
220 |
acagccgtgtgtaaa--atacagcagaaatatattagcctttgttattttatat |
271 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
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|
| T |
31901569 |
acagccgtgtgtaaaagatatagcataaatatattagcctttgttattttatat |
31901622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 23 - 268
Target Start/End: Original strand, 31925239 - 31925485
Alignment:
| Q |
23 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacaattgacttgccttattcatgtaca |
122 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31925239 |
atcatcatcattgttgacttcccttaattcatgcataactattattgtttaggatcaactgtcattagtcagtacagttgacttaccttattcatgtaca |
31925338 |
T |
|
| Q |
123 |
attgttttgctctactgtaattctaattcaatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtaca |
222 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31925339 |
attgttttgctctactgtaattccaa-tcaataaatttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtaca |
31925437 |
T |
|
| Q |
223 |
gccgtgtgtaaa--atacagcagaaatatattagcctttgttatttta |
268 |
Q |
| |
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||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
31925438 |
accgtgtgtaaaagatatagcataaatatattagcctttgttatttta |
31925485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 390 - 465
Target Start/End: Complemental strand, 48446735 - 48446660
Alignment:
| Q |
390 |
tggatttcattcaagtttcaagcaatcaattaaaactcaatatatatcatagctttacattttaccagtattcata |
465 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||| ||||| || |||||||| |
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| T |
48446735 |
tggatttctttcatgtttcaagcaatcaattaaaactcaaaatatatcatagttttatgttttatcactattcata |
48446660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 43099677 - 43099632
Alignment:
| Q |
392 |
gatttcattcaagtttcaagcaatcaattaaaactcaatatatatc |
437 |
Q |
| |
|
|||||| ||||| ||||||||||||| ||||||||||| ||||||| |
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| T |
43099677 |
gatttctttcaaatttcaagcaatcagttaaaactcaaaatatatc |
43099632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 292 - 344
Target Start/End: Complemental strand, 43099889 - 43099837
Alignment:
| Q |
292 |
atttcatcggtcattaaaatccactttgttgtgacaaacaaacattgttcaat |
344 |
Q |
| |
|
|||||||| |||| ||||||||| |||| | ||||||||||| |||||||||| |
|
|
| T |
43099889 |
atttcatcagtcactaaaatccattttgctatgacaaacaaatattgttcaat |
43099837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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