View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20859_high_4 (Length: 369)
Name: NF20859_high_4
Description: NF20859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20859_high_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 172 - 369
Target Start/End: Complemental strand, 38490361 - 38490163
Alignment:
| Q |
172 |
gaatgcacgtcgttgctaggaatacttccacatttccccaaacttcaacatcttatcattcaagttttgatgtttaggatttgctttctttttcaattct |
271 |
Q |
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| T |
38490361 |
gaatgcacgtcgttgttaggaatacttccacatttccccaaacttcaacatcttatcattcaggttttgatgtttaggatttgctttctttttcaattct |
38490262 |
T |
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| Q |
272 |
aatttcacgtattttattttctaaaaacaaaaattatgcgaactgtttataggataatgcgaaggaagggaat-atttgttacaatttttgcaagcatc |
369 |
Q |
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| T |
38490261 |
aatttcacgtattttattttctaaaaacaaaaattatgcgaactgtttacaggataatgcgaaggaaggaaataatttgttacaatttttggaagcatc |
38490163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 278
Target Start/End: Complemental strand, 7175251 - 7175067
Alignment:
| Q |
94 |
atctcttggacaaggcttcccgtgttttacaatttgatgcacatgaaacttagtattcatgatacacattgcaatatggaatgcacgtcgttgctaggaa |
193 |
Q |
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| T |
7175251 |
atctctcggacaaggcttaccgtgtttcacaatttgacccacatggaacttagtgttcatgataagttttgcaataagagatgtacgaggttgctaggaa |
7175152 |
T |
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| Q |
194 |
tacttccacatttccccaaacttcaacatcttatcattcaagttttgatgtttaggatttgctttctttttcaattctaatttca |
278 |
Q |
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| T |
7175151 |
tactcccacattttcccaaacttgaacattatatcattcaggttctgatttttagtatttgttttctttttcaattgtaatttca |
7175067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 48446157 - 48446273
Alignment:
| Q |
187 |
ctaggaatacttccacatttccccaaacttcaacatcttatcattcaagttttgatgtttaggatttgctttctttttcaattctaatttcacgtatttt |
286 |
Q |
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| T |
48446157 |
ctagcaatactcccacatttccccaatcttcaacattttatcatccaggttttgatgtttaggatttgttttctttttaaattctaatttcacatatttt |
48446256 |
T |
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| Q |
287 |
attttctaaaaacaaaaa |
304 |
Q |
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| T |
48446257 |
atttt-taaaaccaaaaa |
48446273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 43099114 - 43099164
Alignment:
| Q |
183 |
gttgctaggaatacttccacatttccccaaacttcaacatcttatcattca |
233 |
Q |
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| T |
43099114 |
gttgctaggaatactcccacgcttccccaaacttcaacattttatcattca |
43099164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 47368156 - 47368105
Alignment:
| Q |
102 |
gacaaggcttcccgtgttttacaatttgatgcacatgaaacttagtattcat |
153 |
Q |
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| T |
47368156 |
gacaaggcttcccatgtttcacaatttgacccacatgaaacttagcattcat |
47368105 |
T |
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