View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085R-Insertion-1 (Length: 1015)

Name: NF2085R-Insertion-1
Description: NF2085R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085R-Insertion-1
NF2085R-Insertion-1
[»] chr2 (29 HSPs)
chr2 (432-979)||(5814520-5815078)
chr2 (7-433)||(5815124-5815550)
chr2 (776-979)||(41192368-41192574)
chr2 (40-392)||(5795475-5795818)
chr2 (36-240)||(5777803-5778006)
chr2 (779-979)||(21083667-21083869)
chr2 (32-240)||(5772172-5772379)
chr2 (32-238)||(5828021-5828219)
chr2 (432-705)||(5796240-5796517)
chr2 (101-240)||(5797814-5797953)
chr2 (779-979)||(4616623-4616826)
chr2 (194-329)||(5815586-5815721)
chr2 (776-979)||(1887814-1888020)
chr2 (776-979)||(6728514-6728720)
chr2 (776-979)||(34619886-34620073)
chr2 (776-979)||(5290686-5290890)
chr2 (829-979)||(32737857-32738010)
chr2 (678-770)||(5816185-5816278)
chr2 (812-934)||(2195200-2195322)
chr2 (842-926)||(37057161-37057245)
chr2 (32-75)||(5777519-5777562)
chr2 (32-75)||(5793129-5793172)
chr2 (343-392)||(5778049-5778101)
chr2 (863-959)||(26257781-26257880)
chr2 (349-392)||(5797688-5797734)
chr2 (817-869)||(6903813-6903865)
chr2 (826-925)||(29132678-29132776)
chr2 (343-392)||(5772415-5772467)
chr2 (833-867)||(6903819-6903853)
[»] chr8 (14 HSPs)
chr8 (776-979)||(35161503-35161707)
chr8 (776-959)||(4322592-4322777)
chr8 (776-922)||(15743234-15743380)
chr8 (776-959)||(4759214-4759399)
chr8 (776-959)||(42182556-42182741)
chr8 (776-979)||(1217687-1217893)
chr8 (823-976)||(5913104-5913260)
chr8 (812-979)||(9039597-9039767)
chr8 (774-840)||(23810900-23810966)
chr8 (919-976)||(15739695-15739755)
chr8 (774-833)||(5913980-5914039)
chr8 (917-959)||(23810863-23810906)
chr8 (829-867)||(42182609-42182647)
chr8 (829-870)||(43835423-43835464)
[»] chr7 (14 HSPs)
chr7 (776-979)||(4035137-4035343)
chr7 (776-979)||(39283885-39284091)
chr7 (813-944)||(8260812-8260944)
chr7 (776-1015)||(37449898-37450145)
chr7 (827-979)||(3742355-3742506)
chr7 (813-875)||(33802907-33802969)
chr7 (858-979)||(14678282-14678406)
chr7 (827-870)||(31267975-31268018)
chr7 (803-979)||(40144768-40144941)
chr7 (816-870)||(2914742-2914796)
chr7 (833-867)||(8260828-8260862)
chr7 (829-867)||(31267978-31268016)
chr7 (829-867)||(33802923-33802961)
chr7 (835-925)||(39476483-39476572)
[»] chr6 (5 HSPs)
chr6 (776-979)||(11598915-11599121)
chr6 (800-959)||(30634121-30634282)
chr6 (803-979)||(3515203-3515383)
chr6 (829-898)||(13312535-13312603)
chr6 (832-889)||(23912328-23912385)
[»] chr5 (11 HSPs)
chr5 (779-979)||(1081873-1082075)
chr5 (776-979)||(2786628-2786834)
chr5 (776-979)||(18172120-18172326)
chr5 (828-979)||(12143994-12144148)
chr5 (788-979)||(34953956-34954150)
chr5 (812-948)||(40034020-40034157)
chr5 (889-979)||(7662189-7662283)
chr5 (776-848)||(7662272-7662344)
chr5 (817-868)||(24531027-24531078)
chr5 (835-875)||(8688171-8688211)
chr5 (829-870)||(11125881-11125922)
[»] chr3 (16 HSPs)
chr3 (776-979)||(49501517-49501723)
chr3 (835-971)||(49742092-49742231)
chr3 (837-979)||(41649903-41650048)
chr3 (776-889)||(53401552-53401663)
chr3 (835-979)||(23029602-23029749)
chr3 (889-979)||(2447602-2447696)
chr3 (776-848)||(2447541-2447613)
chr3 (825-867)||(36182815-36182857)
chr3 (889-975)||(49303216-49303306)
chr3 (825-867)||(36182819-36182861)
chr3 (776-925)||(48086738-48086886)
chr3 (829-901)||(2182556-2182627)
chr3 (812-863)||(50561676-50561727)
chr3 (833-867)||(50561676-50561710)
chr3 (829-862)||(6755815-6755848)
chr3 (832-889)||(47560455-47560512)
[»] chr1 (16 HSPs)
chr1 (776-979)||(33686529-33686735)
chr1 (776-977)||(12926723-12926927)
chr1 (776-959)||(10308369-10308553)
chr1 (829-979)||(7014759-7014912)
chr1 (776-979)||(43138634-43138840)
chr1 (818-980)||(22605376-22605541)
chr1 (830-944)||(30858446-30858561)
chr1 (813-979)||(1671312-1671480)
chr1 (776-848)||(15399016-15399088)
chr1 (818-870)||(3781856-3781908)
chr1 (833-944)||(5770585-5770696)
chr1 (837-925)||(21482862-21482949)
chr1 (776-848)||(49150491-49150563)
chr1 (835-925)||(3660220-3660309)
chr1 (829-863)||(5770662-5770696)
chr1 (776-809)||(23943676-23943709)
[»] chr4 (25 HSPs)
chr4 (776-977)||(54703533-54703737)
chr4 (812-979)||(42118906-42119076)
chr4 (812-958)||(37694519-37694667)
chr4 (776-979)||(34939344-34939550)
chr4 (776-979)||(43502270-43502476)
chr4 (779-979)||(52789294-52789497)
chr4 (776-921)||(36046938-36047083)
chr4 (776-879)||(52032771-52032874)
chr4 (803-979)||(33985434-33985613)
chr4 (804-979)||(54808989-54809167)
chr4 (901-979)||(51242831-51242912)
chr4 (776-848)||(47020012-47020084)
chr4 (831-870)||(2777925-2777964)
chr4 (829-934)||(9242953-9243057)
chr4 (889-956)||(47020073-47020143)
chr4 (812-870)||(49261883-49261941)
chr4 (889-959)||(45043015-45043088)
chr4 (814-870)||(31936419-31936475)
chr4 (901-948)||(52032720-52032768)
chr4 (891-948)||(779474-779533)
chr4 (812-863)||(13856165-13856216)
chr4 (832-867)||(42118923-42118958)
chr4 (812-870)||(13867879-13867937)
chr4 (829-867)||(37694612-37694650)
chr4 (829-866)||(43139623-43139660)
[»] scaffold0051 (1 HSPs)
scaffold0051 (856-979)||(20069-20195)


Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 432 - 979
Target Start/End: Complemental strand, 5815078 - 5814520
Alignment:
Q  432 caaaggaactctcgtactccaaattgaaaattgttttaaaagtttgcaatagaatattgtgtactttttccattgcatcagcttacttggtggttaagta 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5815078 caaaggaactctcgtactccaaattgaaaattgttttaaaagtttgcaatagaatattgtgtactttttccattgcatcagcttacttggtggttaagta 5814979  T
Q  532 atgcattgcatgcatgttacaatcagaaagcagttatgttgtgtactaaataattacttttttgcagcattatgtgattccaat--agagtgtgtgtgaa 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  5814978 atgcattgcatgcatgttacaatcagaaagcagttatgttgtgtactaaataattacttttttgcagcattatgtgattccaatagagagtgtgtgtgaa 5814879  T
Q  630 gaaatacattacatgttccaacaccccttcatacgtccttattagtaacagaattctctcactctatcccagtcccttaacttcaccaac--atacatcc 727  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||  ||||||||    
T  5814878 gaaatacattacatgttccaacaccccttcatacgtccttattagtaacagaattctatgactctatcccagtcccttaacttcaccaacatatacatcc 5814779  T
Q  728 cttctctatttagggccgacccaaggggctgtcactaaagcaagaatt---ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatata 824  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||   || || ||||| |||||||||||||||||||||||||||||||||||||    
T  5814778 cttctctattcagggccgacccaaggggctgtcactaaagcaagaattttgctttttaccctacacattttgtttgcgccctgcacttttttcaaatata 5814679  T
Q  825 accctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaa 923  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  5814678 accctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcgtgactttaagtcacgcactactgagcctatacgcgagttaa 5814579  T
Q  924 cttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5814578 cttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 5814520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 5815550 - 5815124
Alignment:
Q  7 catacattgctgttatatacttactcttctatcttaagttgcactaaaaatagaagttactaacatgtgcttacatgttcagtcacgttcatagaaaaaa 106  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5815550 catacattgctgttatatacttatacttctatcttaagttgcactaaaaatagaagttactaacatgtgcttacatgttcagtcacgttcatagaaaaaa 5815451  T
Q  107 gtagtgaaaagaatgaacttcattaacgaggtattaacaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgatgacattgcaacc 206  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5815450 gtagtgaaaagaatgaacttcattaacgaggtactaaaaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgataacattgcaacc 5815351  T
Q  207 ctctaataaagtgtgacttattatgaaagaatgtgtatttctttaaatgtacaaagcaataagcaatattgagtcactatgaaaaatggtgtaaagacgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5815350 ctctaataaagtgtgacttattatgaaagaatgtgtatttctttaaatgtacaaagcaataagcaatattgagtcactatgaaaaatggtgtaaagacgg 5815251  T
Q  307 tacatattacctcaaagataaatggtgactaattatatatgcacttgctttctcatctctagtaattattcctttttaattatcatattaggtaaaattc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5815250 tacatattacctcaaagataaatggtgactaattatatatgcacttgctttctcatctctagtaataattcctttttaattatcatattaggtaaaattc 5815151  T
Q  407 tccttatattaggtaaaattaggacca 433  Q
    |||||||||||||||||||||||||||    
T  5815150 tccttatattaggtaaaattaggacca 5815124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 41192574 - 41192368
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41192574 ctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 41192475  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||  |||| ||||||||| || ||||||||||||  ||||||||||||||||||| ||||||||||| |||||| |||||| ||||||||||||||    
T  41192474 gctctgtgtgac-ttaagtcacacaccactgagcctatgtgcgagttaacttgcgcaagttggccggtggtaaaaactaaagcacaaacgtttcttggac 41192376  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  41192375 ggtagtca 41192368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 40 - 392
Target Start/End: Original strand, 5795475 - 5795818
Alignment:
Q  40 ttaagttgcactaaaaatagaagttactaacatgtgcttacatgttcagtcacgttcatagaaaaaagtagtgaaaagaatgaacttcattaacgaggta 139  Q
    ||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||  ||||||||  ||||||    
T  5795475 ttaagttacactaaaaataaaaattactaacatgtgcttacatgttcggtcacgttcttagaaaaaagtattgaaaagaatgggcttcattattgaggta 5795574  T
Q  140 ttaacaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgatgacattgcaaccctctaataaagtgtgacttattatgaaagaatg 239  Q
                  |||||||||||||||||      |||| ||||| ||||||||||||| |||||| |||| ||||||||||||||||  |||||||     
T  5795575 --------------ctaacaaagtattaaaaattttttagtaatggtaagtcgatgacattacaaccccctaacaaagtgtgacttattacaaaagaatc 5795660  T
Q  240 tgtatttcttt-aaatgtacaaagcaataagcaatattgagtcactatgaaaaatggtgtaaagacggtacatattacctcaaagataaatggtga---- 334  Q
    | ||  ||||| ||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||| || ||| |||||||||| || ||||||||        
T  5795661 tataaatcttttaaatgtacaaagcaataagtaatattgagtcactatggaaaacggtttaaagacagtgcatgttacctcaaaaat-aatggtgactat 5795759  T
Q  335 ctaattatatatgcac-ttgctttctcatctctagtaattattcctttttaattatcat 392  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  5795760 ctaactatatatacactttgctttctcatctctagtaattattcctttttaattatcat 5795818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 5777803 - 5778006
Alignment:
Q  36 tatcttaagttgcactaaaaatagaagttactaacatgtgcttacatgttcagtcacgttcatagaaaaaagtagtgaaaagaatgaacttcattaacga 135  Q
    ||||||||||| ||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||||||||| |||||| |||| | ||||||||| |    
T  5777803 tatcttaagttacactaaaaataaaaattactaacatatgcttacatgttcggtcactttcatagaaaaaagtattgaaaaaaatggatttcattaacta 5777902  T
Q  136 ggtattaacaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgatgacattgcaaccctctaataaagtgtgacttattatgaaag 235  Q
      || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||     
T  5777903 aatactaacaaagtgtgactaacaaaatattaaaagaaaactagtgatggtgagtcgatgacattacaaccc-caaacaaagtgtgacttattatgaaat 5778001  T
Q  236 aatgt 240  Q
    |||||    
T  5778002 aatgt 5778006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 779 - 979
Target Start/End: Original strand, 21083667 - 21083869
Alignment:
Q  779 ttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagct 878  Q
    |||| |||||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  21083667 ttcatcctgcatattttgcttgcgccctacacatttttcaaatataaccctgcgtgagttaagtcacgcagtgagacttaactcacgcatctcacaagct 21083766  T
Q  879 ctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggtaaaactgaagcac-aacgtttcttggacggta 975  Q
    |||| |||| |||||||||  || ||||||||| | ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  21083767 ctgcgtgac-ttaagtcacttacaactgagcctctgcgcaagttaacttgcgcaagttggccggtggtaaaactgaagcacaaacgtttcttggacggta 21083865  T
Q  976 gtca 979  Q
    ||||    
T  21083866 gtca 21083869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 5772172 - 5772379
Alignment:
Q  32 cttctatcttaagttgcactaaaaatagaagttactaacatgtgcttacatgttcagtcacgttcatagaaaaaagtagtgaaaagaatgaacttcatta 131  Q
    ||||||||||||||| ||||||||||| || ||||||| ||||||||| ||||||  |||  || ||||| ||||||| ||||||||||| |||||||||    
T  5772172 cttctatcttaagttacactaaaaataaaaattactaatatgtgcttatatgttcgatcatttttatagagaaaagtattgaaaagaatggacttcatta 5772271  T
Q  132 acgaggtattaacaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgatgacattgcaaccctctaataaagtgtgacttattatg 231  Q
    || |  || ||||||||||||||||||||| ||||||||||||| |||| ||| |||||| ||||||||||||||| |||||||||||||||||||||||    
T  5772272 actaaatactaacaaagtgtgactaacaaaatattaaaagaaaattagtaatgatgagtcaatgacattgcaaccc-ctaataaagtgtgacttattatg 5772370  T
Q  232 aaagaatgt 240  Q
    |||||||||    
T  5772371 aaagaatgt 5772379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 5828021 - 5828219
Alignment:
Q  32 cttctatcttaagttgcactaaaaatagaagttactaacatgtgcttacatgttcagtcacgttcatagaaaaaagtagtgaaaagaatgaacttcatta 131  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| || |||||| |||  |||| |||     
T  5828021 cttctatctttagttacactaaaaatagaaattactaacatgtgcttacatgttcggtcactttcatagaaaaaaatattgaaaaaaattgactttatt- 5828119  T
Q  132 acgaggtattaacaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgatgacattgcaaccctctaataaagtgtgacttattatg 231  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||  ||| |||||||||||||| |||    
T  5828120 acgaggtacttacaaagtgtgactaacaaagtattaaaagaaaactagtga-------tcaatgacattgcaacccattaacaaagtgtgacttatcatg 5828212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 432 - 705
Target Start/End: Original strand, 5796240 - 5796517
Alignment:
Q  432 caaaggaactctcgtactccaaattgaaaattgttttaaaagtttgcaatagaatattgtgtactttttccattgcatcagcttacttggtggttaagta 531  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||||||||||   ||||||| ||||||||||||||||| |||||||||| ||||||||    
T  5796240 caaaggaactcttgtactccaaattgaaaattattttgaaagtttgcaatag---attgtgtgctttttccattgcatcatcttacttggttgttaagta 5796336  T
Q  532 atgcattgcatgcatgttacaatcagaaagca------gttatgttgtgtact-aaataattacttttttgcagca-ttatgtgattccaataga----g 619  Q
             |||||||||||||||| ||||||       ||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||    |    
T  5796337 ---------atgcatgttacaatcacaaagcacttatgtttatgttatgtactaaaaaaattacttttttgcagcacttatgtgattccaatagagagtg 5796427  T
Q  620 tgtgtgtgaagaaatacattacatgttccaacaccccttcatacgtcctt----attagtaacagaattctctcactctatcccagtccc 705  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||||||    ||||| ||| |||||| |||| ||||||||| ||||    
T  5796428 tgtgtgtgaagaaatgcattgcatgttccaacaccccttcctacgtccttataaattagcaactgaattccctcattctatcccattccc 5796517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 5797953 - 5797814
Alignment:
Q  101 aaaaaagtagtgaaaagaatgaacttcattaacgaggtattaacaaagtgtgactaacaaagtattaaaagaaaactagtgatggtgagtcgatgacatt 200  Q
    ||||||||| | ||||||||| | ||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  5797953 aaaaaagtattaaaaagaatggatttcattatcgaggtactaacaaagtgtaactaacaaagtattaaaagaaaattagtgatggtgagtcgatgacatt 5797854  T
Q  201 gcaaccctctaataaagtgtgacttattatgaaagaatgt 240  Q
    ||||||| |||| |||||||||||||| ||||||||||||    
T  5797853 gcaaccccctaacaaagtgtgacttataatgaaagaatgt 5797814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 779 - 979
Target Start/End: Complemental strand, 4616826 - 4616623
Alignment:
Q  779 ttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagct 878  Q
    ||||||| |||||||| | | ||||||||||  |||||||||||||||| || |||||||||||||||| | | |||||||||||||||| |||||||||    
T  4616826 ttcacccagcacatttcgctcgcgccctgcatgtttttcaaatataaccatgtgtgagttaagtcacgctgtgtgacttaactcacgcacttcacaagct 4616727  T
Q  879 ctgcttgactttaagtcacg-cacactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggt 974  Q
    |||| |||| |||||||||| | |||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | |||||||    
T  4616726 ctgcgtgac-ttaagtcacgccccactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggt 4616628  T
Q  975 agtca 979  Q
     ||||    
T  4616627 ggtca 4616623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 194 - 329
Target Start/End: Complemental strand, 5815721 - 5815586
Alignment:
Q  194 tgacattgcaaccctctaataaagtgtgacttattatgaaagaatgtgtatttctttaaatgtacaaagc-aataagcaatattgagtcactatgaaaaa 292  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||||    
T  5815721 tgacattgcaacccactaacaaagtgtgacgtattatgaaagaatgtatatatctttaaatgtacaaagcaaataggcaatattgagtcactatgaaaaa 5815622  T
Q  293 tggtgtaaagacggtacatattacctcaaagataaat 329  Q
    |||| | ||||| || |||||||||||||||||||||    
T  5815621 tggtct-aagacagtgcatattacctcaaagataaat 5815586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 1887814 - 1888020
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||  ||||||| | | | ||| ||||| |||||||||||| | | |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  1887814 ctcttcacccaacacatttcgctcgagccttgcacatttttcaaatatgatcttgcgtgagttaagtcacgcaacgtcacttaacacacgcacctcacaa 1887913  T
Q  876 gctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| ||||||||||| | ||||| | ||| |||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||    
T  1887914 gctctgcgtgac-ttaagtcacgcccaactgatcatatgcgcgagttaacttgcgcaagttgcccggtggtaaaaactgaagcacaaacgtttcttggac 1888012  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  1888013 ggtagtca 1888020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 6728514 - 6728720
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||  ||||||||| ||||| |||||| ||||| ||||||||||||||| |||||||||| ||||| | | |||||||   ||||||||||||    
T  6728514 ctcttcacccatcacattttgcttgcgtcctgcattttttccaaatataaccctgcttgagttaagtaacgcaacaacacttaacatgcgcacctcacaa 6728613  T
Q  876 gctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcaca-acgtttcttggac 971  Q
     || ||  |||||| ||| |  |||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  6728614 tctatgtgtgactt-aagccgtgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacagacgtttcttggac 6728712  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  6728713 ggtagtca 6728720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 34620073 - 34619886
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||                   |||||||||    
T  34620073 ctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgc-------------------acctcacaa 34619993  T
Q  876 gctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||| | ||||||||||||| ||||||||||||||    
T  34619992 gctctgcgtgac-ttaagtcacgcactactgagcctatgcgcgagttaacttgcacaagttggccggtgataaaaactgaagcacaaacgtttcttggac 34619894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 5290890 - 5290686
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||| || |||||||| | | ||||| ||||  |||||| ||||||||| |||||| |||||||||||| | | ||||||||||| | ||||| |||    
T  5290890 ctcttcatccagcacatttcgctcgcgccgtgcatgtttttcgaatataacc-tgcgtgggttaagtcacgctgtgtgacttaactcatgtacctctcaa 5290792  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcaca-acgtttcttggac 971  Q
    ||||||| |||| |||||||||||| |||||||||||| || ||||||||| ||||||| ||| ||||||| ||||||||| |||| ||||||| |||||    
T  5290791 gctctgcgtgac-ttaagtcacgcaccactgagcctatgcgtgagttaactcgcgcaagttggacggtggtaaaaactgaaacacagacgtttc-tggac 5290694  T
Q  972 ggtagtca 979  Q
    ||| ||||    
T  5290693 ggtggtca 5290686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 829 - 979
Target Start/End: Complemental strand, 32738010 - 32737857
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttg 927  Q
    ||||| ||||||||||| ||||| |||||||   |||||||| | ||| | ||| |||||| ||||||||||| ||||||||| | || |||||||||||    
T  32738010 tgcgttagttaagtcacacagcgtgacttaataaacgcaccttataagttgtgcgtgactt-aagtcacgcaccactgagcctctgcgtgagttaacttg 32737912  T
Q  928 cgcaagt-ggccggtggtaaaa-ctgaagcacaa-cgtttcttggacggtagtca 979  Q
    ||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  32737911 cgcaagttggccgatggtaaaaactgaagcacaaacgtttcttggacggtagtca 32737857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 678 - 770
Target Start/End: Original strand, 5816185 - 5816278
Alignment:
Q  678 cagaattctctcactctatcccagtcccttaacttcaccaacatacatcccttctctatttagggccgacccaa-ggggctgtcactaaagcaa 770  Q
    |||||||| |||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||  ||| ||||||| |||||||||||    
T  5816185 cagaattccctcactctattccattcacttaacttcaccaacatacatcccttctctattcagggccgattcaagggggctgccactaaagcaa 5816278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 812 - 934
Target Start/End: Complemental strand, 2195322 - 2195200
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcct 910  Q
    |||| |||||||||| |||||||||||||  |||||| || ||||||||||||| ||||||||||||||||  || |||||||| |||| |||||| | |    
T  2195322 ttttccaaatataactctgcgtgagttaacacacgcaacgtgacttaactcacgtacctcacaagctctgcacga-tttaagtctcgcaccactgatcat 2195224  T
Q  911 atacgcgagttaacttgcgcaagt 934  Q
     ||| |||||||||| ||||||||    
T  2195223 ctacccgagttaactcgcgcaagt 2195200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 842 - 926
Target Start/End: Original strand, 37057161 - 37057245
Alignment:
Q  842 tcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaactt 926  Q
    |||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||||| |||| || || |||||||||||||||    
T  37057161 tcacgctgcgtgacttaactcacgcacctcacaagctctgcgtgac-ttaagtcacgcaccactaagtctttacgcgagttaactt 37057245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 5777519 - 5777562
Alignment:
Q  32 cttctatcttaagttgcactaaaaatagaagttactaacatgtg 75  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  5777519 cttctatcttaagttacactaaaaatagaaattactaacatgtg 5777562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 5793129 - 5793172
Alignment:
Q  32 cttctatcttaagttgcactaaaaatagaagttactaacatgtg 75  Q
    ||||||||||||||| |||||||||||||| |||||||||||||    
T  5793129 cttctatcttaagttacactaaaaatagaaattactaacatgtg 5793172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 5778049 - 5778101
Alignment:
Q  343 atatgcacttgctttctcatctctagtaa---ttattcctttttaattatcat 392  Q
    |||| ||||||||||||||||||||||||   |||||||||||||||||||||    
T  5778049 atatacacttgctttctcatctctagtaatttttattcctttttaattatcat 5778101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 863 - 959
Target Start/End: Complemental strand, 26257880 - 26257781
Alignment:
Q  863 acgcacctcacaagctctgcttgactttaagtcacgca--cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcaca 958  Q
    ||||||||||||| |||||| |||||| ||||||| ||  |||||||||| | ||| |||||||||||||||| | | ||||||| ||||||||||||||    
T  26257880 acgcacctcacaaactctgcgtgactt-aagtcacacatccactgagcctctgcgcaagttaacttgcgcaagttagacggtggtaaaaactgaagcaca 26257782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 5797734 - 5797688
Alignment:
Q  349 acttgctttctcatctctagtaat---tattcctttttaattatcat 392  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||    
T  5797734 acttgctttctcatctctagtaattattattcctttttaattatcat 5797688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 817 - 869
Target Start/End: Complemental strand, 6903865 - 6903813
Alignment:
Q  817 caaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacc 869  Q
    |||||||| | |||||||||||||||||||| ||| ||||||||||| |||||    
T  6903865 caaatataccactgcgtgagttaagtcacgctgcgtgacttaactcatgcacc 6903813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 826 - 925
Target Start/End: Complemental strand, 29132776 - 29132678
Alignment:
Q  826 ccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaac 924  Q
    |||||||| |||||||||||||| || ||||||||| |||||||| | ||| ||| | |||| |||||||||||| ||| | |||||| |||||||||||    
T  29132776 ccctgcgttagttaagtcacgcaacgtgacttaactaacgcaccttataagttctacgtgac-ttaagtcacgcaccaccg-gcctatgcgcgagttaac 29132679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 5772415 - 5772467
Alignment:
Q  343 atatgcacttgctttctcatctctagta---attattcctttttaattatcat 392  Q
    |||| |||||||||||||||||||||||   ||||||| ||||||||||||||    
T  5772415 atatacacttgctttctcatctctagtaattattattcttttttaattatcat 5772467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 6903819 - 6903853
Alignment:
Q  833 tgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||| |||||||||||||||    
T  6903819 tgagttaagtcacgcagcgtgacttaactcacgca 6903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 1e-65; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 35161503 - 35161707
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||    
T  35161503 ctcttcaccctgcacattttgctcgcgccctgcactttttttaaatataaccatgcgtgagttaagtcatgcagcgagacttaacacacccacctcacaa 35161602  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggtaaaactgaagcac-aacgtttcttggacg 972  Q
    ||||||| ||||||  ||||||||| |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||    
T  35161603 gctctgcgtgactt--agtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaactgaagcacaaacgtttcttagacg 35161700  T
Q  973 gtagtca 979  Q
    |||||||    
T  35161701 gtagtca 35161707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 776 - 959
Target Start/End: Original strand, 4322592 - 4322777
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||| |||||||||||| | ||||||||||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  4322592 ctcttcactctgcacattttgctcgcgccctgcactttttttaaatataatcctgtgtgagttaactcacgcagcgagacttaactcacgcacctcacaa 4322691  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcacaa 959  Q
    | ||||| | || ||| |||||||| |||||||||||| |||||||||||||||||||| || |||||||| |||||||||||||||    
T  4322692 gttctgcgtaac-ttaggtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaa 4322777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 776 - 922
Target Start/End: Complemental strand, 15743380 - 15743234
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  15743380 ctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataatcctgtgtgagttaagtcacgcagcaagacttaactcacgcacctcacaa 15743281  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagtta 922  Q
    ||||||| |||| |||||||||||| |||||||||||| |||||||||    
T  15743280 gctctgcgtgac-ttaagtcacgcaccactgagcctatgcgcgagtta 15743234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 776 - 959
Target Start/End: Complemental strand, 4759399 - 4759214
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||  |||||||||| | ||||||  ||  |||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||    
T  4759399 ctcttcacctagcacattttgctcgcgcccaacatgtttttcaaatataaccctgcgtaagttaagtcacgcaacgtgacttaacacacgcacctcacaa 4759300  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcacaa 959  Q
    ||||||| |||| |||||||| ||| |||||||||| | |||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  4759299 gctctgcgtgac-ttaagtcatgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagcacaa 4759214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 776 - 959
Target Start/End: Original strand, 42182556 - 42182741
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||  ||||||| | | ||||||||||  |||| ||||||||| ||||||||||||||||||| | ||| ||||||||||||||| |||||||    
T  42182556 ctcttcacccaacacatttcgctcgcgccctgcatgttttccaaatataatcctgcgtgagttaagtcacactgcgtgacttaactcacgcatctcacaa 42182655  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcacaa 959  Q
    ||||| | ||||  ||||||||||| ||||||| || |||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  42182656 gctctacgtgac-ctaagtcacgcaccactgagtctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaa 42182741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 1217687 - 1217893
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||| | |||||||| | | ||||||||||  |||| |||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||    
T  1217687 ctcttcactcagcacatttcgctcgcgccctgcatgttttccaaatataaccctgtgtgagttaagtcacgttgcgtgacttaactcacgcacctcacaa 1217786  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||| ||  |||| |||||||||||| ||| |||||| | |||||||| ||||||||||| ||||||||||| ||||||||| ||| ||||||||| ||||    
T  1217787 gctttgtgtgac-ttaagtcacgcaccaccgagcctctgcgcgagttgacttgcgcaagttggccggtggtaaaaactgaaacacaaacgtttctgggac 1217885  T
Q  972 ggtagtca 979  Q
    ||| ||||    
T  1217886 ggtggtca 1217893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 823 - 976
Target Start/End: Complemental strand, 5913260 - 5913104
Alignment:
Q  823 taaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagtt 921  Q
    ||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||| ||||||||| || || ||||||| |  |||||||    
T  5913260 taaccctgcgtgagttaagtcacaccgcgtgacttaactcacgcacctcacaagctctgcgtgac-ttaagtcacacaccattgagcctctgtgcgagtt 5913162  T
Q  922 aacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtag 976  Q
    |||| ||||||| ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  5913161 aactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctgggacggtag 5913104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 812 - 979
Target Start/End: Original strand, 9039597 - 9039767
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcct 910  Q
    ||||| |||||||| | ||||||||||||| ||||||||| | ||||||||||||||||||||| || ||| |||| ||||||||| || |||||| |||    
T  9039597 ttttttaaatataatcgtgcgtgagttaagccacgcagcgtgccttaactcacgcacctcacaacctttgcgtgac-ttaagtcacacaccactgaacct 9039695  T
Q  911 atacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
     | |||||||||||||||||||| ||||||||||| ||||||  ||||| ||||||||||||| ||||||||    
T  9039696 ctgcgcgagttaacttgcgcaagttggccggtggtaaaaactacagcacaaacgtttcttggatggtagtca 9039767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 774 - 840
Target Start/End: Complemental strand, 23810966 - 23810900
Alignment:
Q  774 ttctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaa 840  Q
    |||||||||||| |||||||| | | ||||||||||  |||| ||||||||||||||||||||||||    
T  23810966 ttctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccctgcgtgagttaa 23810900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 919 - 976
Target Start/End: Complemental strand, 15739755 - 15739695
Alignment:
Q  919 gttaacttgcgcaagt-ggccggtggtaaaa-ctgaagcacaa-cgtttcttggacggtag 976  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  15739755 gttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtag 15739695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 774 - 833
Target Start/End: Complemental strand, 5914039 - 5913980
Alignment:
Q  774 ttctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgt 833  Q
    |||||||||||| |||||||| | ||||||||||||  |||||||||||| |||||||||    
T  5914039 ttctcttcacccagcacatttcgcttgcgccctgcatgtttttcaaatatcaccctgcgt 5913980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 917 - 959
Target Start/End: Complemental strand, 23810906 - 23810863
Alignment:
Q  917 gagttaacttgcgcaagt-ggccggtggtaaaactgaagcacaa 959  Q
    |||||||||||||||||| || ||||||||||||||||||||||    
T  23810906 gagttaacttgcgcaagttggacggtggtaaaactgaagcacaa 23810863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 829 - 867
Target Start/End: Complemental strand, 42182647 - 42182609
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  42182647 tgcgtgagttaagtcacgcagtgtgacttaactcacgca 42182609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 829 - 870
Target Start/End: Complemental strand, 43835464 - 43835423
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    ||||||||||||||||||||||  |||||||||||| |||||    
T  43835464 tgcgtgagttaagtcacgcagcaggacttaactcacacacct 43835423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 1e-65; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 4035343 - 4035137
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4035343 ctcttcaccctgcacattttgctcgcgccctacacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgcacctcacaa 4035244  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
     | |||| |||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||| |||    
T  4035243 tccctgcgtgac-ttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatgtttcttagac 4035145  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  4035144 ggtagtca 4035137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 39283885 - 39284091
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||| |||||||| | ||||||||||||  ||||  |||||||||| ||||||||||||||||||||||| | |||||||||||||||||| ||    
T  39283885 ctcttcacccagcacatttcgcttgcgccctgcatgttttcaaaatataaccatgcgtgagttaagtcacgcagcgtggcttaactcacgcacctcataa 39283984  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| |||||||||||| |||||||||| |||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||||| | ||||    
T  39283985 gctctgcgtgac-ttaagtcacgcaccactgagcctctacgcgagttaatttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttttgggac 39284083  T
Q  972 ggtagtca 979  Q
    ||| ||||    
T  39284084 ggtggtca 39284091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 813 - 944
Target Start/End: Original strand, 8260812 - 8260944
Alignment:
Q  813 ttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagccta 911  Q
    ||||||||||||  ||||||||||||||||||||| ||| ||||||||||| |||||| | || |||||| |||| |||||||||||| ||||||||||     
T  8260812 ttttcaaatatacacctgcgtgagttaagtcacgctgcgtgacttaactcatgcaccttataatctctgcgtgac-ttaagtcacgcaccactgagcctt 8260910  T
Q  912 tacgcgagttaacttgcgcaag-tggccggtggt 944  Q
    | ||||||||||||  |||||| |||||||||||    
T  8260911 tgcgcgagttaactcacgcaagttggccggtggt 8260944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 776 - 1015
Target Start/End: Original strand, 37449898 - 37450145
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||| || |||||||||  | ||| |||||||| ||| |||||||||| ||| | ||||||||| |||| || | ||||||    ||||||| | ||    
T  37449898 ctcttcatccagcacattttactcgcgtcctgcactgtttccaaatataactctgtgcgagttaagtaacgccgcaatacttaatatgcgcaccttataa 37449997  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
     || ||| |||||| ||||| |||| |||||||||||| | |||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||    
T  37449998 tctttgcgtgactt-aagtcgcgcatcactgagcctatgcacgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggac 37450096  T
Q  972 ggtagtc-atggtttgaat--ga-tttacacg-ttttcttagtttttca 1015  Q
    ||||||| ||||||| |||  || |||||||| ||||||||||||||||    
T  37450097 ggtagtcaatggttttaattggattttacacgtttttcttagtttttca 37450145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 827 - 979
Target Start/End: Complemental strand, 3742506 - 3742355
Alignment:
Q  827 cctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcacactgagcctatacgcgagttaactt 926  Q
    ||||||| |||||||||| |||||| || ||||||  ||||| | | || |||||  |||||| |||||||   |||||||||||| || ||||||||||    
T  3742506 cctgcgtcagttaagtcatgcagcgtgatttaactagcgcactttataatctctgtgtgactt-aagtcac---cactgagcctatgcgtgagttaactt 3742411  T
Q  927 gcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  3742410 gcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 3742355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 813 - 875
Target Start/End: Original strand, 33802907 - 33802969
Alignment:
Q  813 ttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  33802907 ttttcaaatatacccctgcgtgagttaagtcacgcagcgtgacttaactcacgcaccttacaa 33802969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 858 - 979
Target Start/End: Original strand, 14678282 - 14678406
Alignment:
Q  858 aactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaag 954  Q
    |||||||||||||||||| |||| | |||| |||||||||||| |||||||||| |  | ||||||||||||||||| ||||||||||| ||||||| ||    
T  14678282 aactcacgcacctcacaacctctacgtgac-ttaagtcacgcaccactgagcctctgtgtgagttaacttgcgcaagttggccggtggtaaaaactgcag 14678380  T
Q  955 cac-aacgtttcttggacggtagtca 979  Q
    ||| ||||||||||||||||| ||||    
T  14678381 cacaaacgtttcttggacggtggtca 14678406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 827 - 870
Target Start/End: Complemental strand, 31268018 - 31267975
Alignment:
Q  827 cctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    |||||||||||||| |||||| ||| ||||||||||||||||||    
T  31268018 cctgcgtgagttaactcacgctgcgtgacttaactcacgcacct 31267975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 979
Target Start/End: Complemental strand, 40144941 - 40144768
Alignment:
Q  803 ccctgcacttttttc-aaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca- 900  Q
    ||||||||||||||| |||||||||||| |||||||||| | ||||| ||| |||||||    ||||       |||| || |||| ||||||||||||     
T  40144941 ccctgcacttttttccaaatataaccctacgtgagttaaataacgcaacgaaacttaacatgagcac-------gctcagcgtgac-ttaagtcacgcac 40144850  T
Q  901 cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    ||||||| ||||  |||| ||||| |||||||| ||||||||||| ||||||||||||| |||||| |||| || |||||||    
T  40144849 cactgagtctatgtgcgacttaacctgcgcaagttggccggtggtaaaaactgaagcacaaacgttccttgaaccgtagtca 40144768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 816 - 870
Target Start/End: Complemental strand, 2914796 - 2914742
Alignment:
Q  816 tcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    |||| |||| ||||| ||||||||||||||||| |  ||||||||||||||||||    
T  2914796 tcaattatatccctgtgtgagttaagtcacgcaacatgacttaactcacgcacct 2914742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 833 - 867
Target Start/End: Complemental strand, 8260862 - 8260828
Alignment:
Q  833 tgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||| |||||||||||||||    
T  8260862 tgagttaagtcacgcagcgtgacttaactcacgca 8260828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 829 - 867
Target Start/End: Original strand, 31267978 - 31268016
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  31267978 tgcgtgagttaagtcacgcagcgtgagttaactcacgca 31268016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 829 - 867
Target Start/End: Complemental strand, 33802961 - 33802923
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  33802961 tgcgtgagttaagtcacgctgcgtgacttaactcacgca 33802923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 835 - 925
Target Start/End: Original strand, 39476483 - 39476572
Alignment:
Q  835 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcacactgagcctatacgcgagttaact 925  Q
    |||||||||| |||||| |||||||||  ||||||| | || || ||| |||||| |||||||||||  | ||||||| ||||||||||||    
T  39476483 agttaagtcatgcagcgtgacttaactagcgcaccttataatctatgcgtgactt-aagtcacgcaccattagcctatgcgcgagttaact 39476572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 1e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 11598915 - 11599121
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  11598915 ctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaactcacaccgcgagacttaactcacgcacctcacaa 11599014  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| |||||||| ||| ||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  11599015 gctctgcgtgac-ttaagtcatgcaccaccgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggac 11599113  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  11599114 ggtagtca 11599121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 800 - 959
Target Start/End: Complemental strand, 30634282 - 30634121
Alignment:
Q  800 gcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgc 899  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  30634282 gcgccctgcacattttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctacgtgac-ttaagtcacgc 30634184  T
Q  900 a-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcacaa 959  Q
    | |||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  30634183 accactgagcctctacgtgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaa 30634121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 803 - 979
Target Start/End: Complemental strand, 3515383 - 3515203
Alignment:
Q  803 ccctgcacttttttcaaatataaccctgcgtgagtt-aagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcac 901  Q
    |||||||  |||| ||||||||||||||  |||||| ||||||| ||| | |||||||||||||||| ||||||||| ||| |||||| |||||||||||    
T  3515383 ccctgcatgttttccaaatataaccctgtttgagtttaagtcacacagtgtgacttaactcacgcacttcacaagctttgcgtgactt-aagtcacgcac 3515285  T
Q  902 -actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
     ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| ||||| ||||||| | ||||||| ||||    
T  3515284 cactgagcctctacgcgagttaacttgcgcaagttggccggtggtaaaaactgtagcacaaacgtttttcggacggtggtca 3515203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 829 - 898
Target Start/End: Original strand, 13312535 - 13312603
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacg 898  Q
    ||||| ||||||||||||| ||| ||||||||| |||||||| | ||||||||| |||| ||||||||||    
T  13312535 tgcgttagttaagtcacgctgcgtgacttaactaacgcaccttataagctctgcgtgac-ttaagtcacg 13312603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 889
Target Start/End: Complemental strand, 23912385 - 23912328
Alignment:
Q  832 gtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactt 889  Q
    |||||| ||||||||| | | |||||||||||||||||| | ||||||||| ||||||    
T  23912385 gtgagtgaagtcacgccgtgtgacttaactcacgcaccttataagctctgcgtgactt 23912328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 7e-64; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 779 - 979
Target Start/End: Complemental strand, 1082075 - 1081873
Alignment:
Q  779 ttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagct 878  Q
    |||||||||||||||||||  |||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1082075 ttcaccctgcacattttgtc-gcgccctgcactttttccaaatttgaccctgtgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagct 1081977  T
Q  879 ctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggt 974  Q
    |||| |||| |||||||||||| |||||||||||| |||||||||||||||||||| || |||||||| ||||||||||||| |||||||||||||||||    
T  1081976 ctgcgtgac-ttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttgaccggtggtaaaaactgaagcacaaacgtttcttggacggt 1081878  T
Q  975 agtca 979  Q
    |||||    
T  1081877 agtca 1081873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 776 - 979
Target Start/End: Original strand, 2786628 - 2786834
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | |||| ||||||| ||| |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  2786628 ctcttcaccctgcacattttgctcgcgctctgcactctttccaaatacaaccctgcgtgagttaagtcgcgcaacgagacttaactcacgcacctcacaa 2786727  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| |||||||| ||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||  ||| ||||||    
T  2786728 gctctgcgtgac-ttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaatattttttggac 2786826  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  2786827 ggtagtca 2786834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 18172326 - 18172120
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||| ||||||||||||| ||||||||||| ||||| |||||| ||| ||||||||||||||||||||| |  ||||||| ||||||| ||||||    
T  18172326 ctcttcaccttgcacattttgttcgcgccctgcacattttttaaatatgaccttgcgtgagttaagtcacgcagtgtcacttaacacacgcacatcacaa 18172227  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| |||||||||||| |||||||| ||| |||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  18172226 gctctgcgtgac-ttaagtcacgcaccactgagcttatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggac 18172128  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  18172127 ggtagtca 18172120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 828 - 979
Target Start/End: Original strand, 12143994 - 12144148
Alignment:
Q  828 ctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaactt 926  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||||||| | |||||||||||    
T  12143994 ctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctttgcgtgac-ttaagtcacgcaccactgagcctatgcacgagttaactt 12144092  T
Q  927 gcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    ||||||| ||| | ||| | ||||||||||||| ||||||||||||||||||||||    
T  12144093 gcgcaagttggtcagtgttaaaaactgaagcacaaacgtttcttggacggtagtca 12144148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 788 - 979
Target Start/End: Original strand, 34953956 - 34954150
Alignment:
Q  788 cacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgac 887  Q
    ||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| | ||||| | |||||||   |||||||||||| || ||| ||||    
T  34953956 cacattttgttcgcgccctgcacttttttcaaatacaaccctacgtgagttaagtaatgcagcaacacttaacatgcgcacctcacaatctatgcgtgac 34954055  T
Q  888 tttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
     |||||||  ||| |||||||||||| ||||||||||||||| |||| |||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  34954056 -ttaagtcgtgcaccactgagcctatgcgcgagttaacttgcacaagttggctggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 34954150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 812 - 948
Target Start/End: Complemental strand, 40034157 - 40034020
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcct 910  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||| ||||   ||||  ||| |||||||||||| ||||||||||    
T  40034157 tttttcaaatataaccctgcatgagttaagtcacgcatcgtgacttaactcatgcaccttacaattactgcgagac-ttaagtcacgcaccactgagcct 40034059  T
Q  911 atacgcgagttaacttgcgcaag-tggccggtggtaaaa 948  Q
     |||||||||||||| ||||||| ||| |||||||||||    
T  40034058 ctacgcgagttaactcgcgcaagttggtcggtggtaaaa 40034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 889 - 979
Target Start/End: Complemental strand, 7662283 - 7662189
Alignment:
Q  889 ttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    ||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  7662283 ttaagtcacgcaccactgagcctatgcgcgatttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttgaacggtagtca 7662189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 848
Target Start/End: Complemental strand, 7662344 - 7662272
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 848  Q
    ||||||| |||| |||||||  | ||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  7662344 ctcttcatcctgaacattttactcgcgccctgcacatttttcaaatatgaccttgcgtgagttaagtcacgca 7662272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 817 - 868
Target Start/End: Complemental strand, 24531078 - 24531027
Alignment:
Q  817 caaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcac 868  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  24531078 caaatatacccctgcgtgagttaagtcacgcagtgtgacttaactcacgcac 24531027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 835 - 875
Target Start/End: Original strand, 8688171 - 8688211
Alignment:
Q  835 agttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  8688171 agttaagtcatgcagcgtgacttaactcacgcacctcacaa 8688211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 829 - 870
Target Start/End: Complemental strand, 11125922 - 11125881
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    ||||| |||||||||||||| || ||||||||||||||||||    
T  11125922 tgcgttagttaagtcacgcaacgtgacttaactcacgcacct 11125881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 3e-63; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 49501723 - 49501517
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||||| |||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49501723 ctcttcaccctgtacattttgttcgcgtcctgcattttttccaaatataaccctgcgtgagttaagtcacacagcgagacttaactcacgcacctcacaa 49501624  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| |||||||||||| |||||||| ||| || ||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||    
T  49501623 gctctgcgtgac-ttaagtcacgcaccactgagcttatgcgtgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggac 49501525  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  49501524 ggtagtca 49501517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 835 - 971
Target Start/End: Complemental strand, 49742231 - 49742092
Alignment:
Q  835 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag 933  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||| |||| ||||||||||||||||||||    
T  49742231 agttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcgtgac-ttaagtcacgcaccactgagtctatgcgcgagttaacttgcgcaag 49742133  T
Q  934 -tggccggtggta-aaactgaagcac-aacgtttcttggac 971  Q
     || ||||||||| |||||||||||| ||||||||||||||    
T  49742132 ttgcccggtggtagaaactgaagcacaaacgtttcttggac 49742092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 837 - 979
Target Start/End: Original strand, 41649903 - 41650048
Alignment:
Q  837 ttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-t 934  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||  |||| ||||||||||||| ||||||||||| |||||||||| ||||||||| |    
T  41649903 ttaagtcacgcagcgagatttaactcacacacctcacaagctctgtgtgac-ttaagtcacgcactactgagcctatgcgcgagttaatttgcgcaagtt 41650001  T
Q  935 ggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    |||||||||| ||||||||||||| || |||||||||||||||||||    
T  41650002 ggccggtggtaaaaactgaagcacaaatgtttcttggacggtagtca 41650048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 776 - 889
Target Start/End: Complemental strand, 53401663 - 53401552
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||| ||||||| | | ||||| |||||||||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||| ||    
T  53401663 ctcttcaccctacacatttcgctcgcgcc-tgcacttttttcaaatttgacc-tgcgtgagttaagttacgcagcgagacttaactcacgcacctcataa 53401566  T
Q  876 gctctgcttgactt 889  Q
    ||||||| ||||||    
T  53401565 gctctgcgtgactt 53401552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 835 - 979
Target Start/End: Original strand, 23029602 - 23029749
Alignment:
Q  835 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag 933  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||| ||| |||| |||||||| ||| |||||||||||| || |||||||||||| | ||    
T  23029602 agttaagtcacgcagcgtgacttaactcacgcatctcataagctttgcgtgac-ttaagtcatgcaccactgagcctatgcgggagttaacttgccctag 23029700  T
Q  934 -tggccggtggta-aaactgaagca-caacgtttcttggacggtagtca 979  Q
     |||||||||||| |||||||| ||  ||||||||||||||||||||||    
T  23029701 ttggccggtggtagaaactgaaacagaaacgtttcttggacggtagtca 23029749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 889 - 979
Target Start/End: Original strand, 2447602 - 2447696
Alignment:
Q  889 ttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    |||||||||||| |||| ||||||| |||||||||||| ||||||| ||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  2447602 ttaagtcacgcaacactaagcctatgcgcgagttaactggcgcaagttggccagtggtaaaaactgaagcacaaacgtttcttggacggtagtca 2447696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 2447541 - 2447613
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 848  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||| | |||||| |||||||||||||||||    
T  2447541 ctcttcaccttgcacattttgctcgtgccctgcacttttttcaaatttgaccctgtgtgagttaagtcacgca 2447613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 825 - 867
Target Start/End: Original strand, 36182815 - 36182857
Alignment:
Q  825 accctgcgtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  36182815 accctgcgtgagttaagtcacgcagcgtgacttaactcacgca 36182857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 889 - 975
Target Start/End: Original strand, 49303216 - 49303306
Alignment:
Q  889 ttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggta 975  Q
    ||||||||| ||| ||||||||| | |||||||||||| ||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  49303216 ttaagtcacacaccactgagcctctgcgcgagttaactcgcgcaagttggccggtggtaaaaactgaagcacaaacgtttctaggacggta 49303306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 825 - 867
Target Start/End: Complemental strand, 36182861 - 36182819
Alignment:
Q  825 accctgcgtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  36182861 accctgcgtgagttaagtcacgctgcgtgacttaactcacgca 36182819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 776 - 925
Target Start/End: Original strand, 48086738 - 48086886
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||  |||||||||| ||||||||||||    | ||||| ||| || ||||  ||||||||||| | ||| |||||||||  ||||||| | ||    
T  48086738 ctcttcacctagcacattttgattgcgccctgcagccatgtcaaaaatacccttgcgcaagttaagtcacactgcgtgacttaacttgcgcaccttataa 48086837  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaact 925  Q
     |||||| |||| |||||||||||| ||||| |||||| ||||||||||||    
T  48086838 cctctgcatgac-ttaagtcacgcaccactg-gcctatgcgcgagttaact 48086886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 829 - 901
Target Start/End: Complemental strand, 2182627 - 2182556
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcac 901  Q
    ||||| ||||||||||||| ||| |||||||||  ||||||| | || |||||||||| ||||||||||||||    
T  2182627 tgcgtaagttaagtcacgctgcgtgacttaacttgcgcaccttataacctctgcttga-tttaagtcacgcac 2182556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 863
Target Start/End: Complemental strand, 50561727 - 50561676
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactca 863  Q
    |||||||||||||   |||||||||||||||||||| ||| |||||||||||    
T  50561727 tttttcaaatatatttctgcgtgagttaagtcacgctgcgtgacttaactca 50561676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 833 - 867
Target Start/End: Original strand, 50561676 - 50561710
Alignment:
Q  833 tgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||| |||||||||||||||    
T  50561676 tgagttaagtcacgcagcgtgacttaactcacgca 50561710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 829 - 862
Target Start/End: Original strand, 6755815 - 6755848
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactc 862  Q
    ||||||||||||||||||||||| ||||||||||    
T  6755815 tgcgtgagttaagtcacgcagcgtgacttaactc 6755848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 889
Target Start/End: Complemental strand, 47560512 - 47560455
Alignment:
Q  832 gtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactt 889  Q
    |||||||||||||||| ||| |||||||||||| ||||| | ||| ||||| ||||||    
T  47560512 gtgagttaagtcacgccgcgtgacttaactcacacaccttataagttctgcgtgactt 47560455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 7e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 33686735 - 33686529
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||| ||||||||||||| | ||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686735 ctcttcatcctgcacattttgctcgcgtcctgcactttttccaaatataattctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 33686636  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||| ||| |||| |||||||||||| |||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| || |||||||||||    
T  33686635 gctttgcgtgac-ttaagtcacgcaccactgagcctatgcgcgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaaatgtttcttggac 33686537  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  33686536 ggtagtca 33686529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 776 - 977
Target Start/End: Original strand, 12926723 - 12926927
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12926723 ctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcatgcacctcacaa 12926822  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    |||||||  ||| |||||||| ||| |||||||||||| |||||||||||||||||||| ||||   |||| ||||||||||||| ||||||||||||||    
T  12926823 gctctgcgcgac-ttaagtcatgcaccactgagcctatgcgcgagttaacttgcgcaagttggctaatggtaaaaactgaagcacaaacgtttcttggac 12926921  T
Q  972 ggtagt 977  Q
     |||||    
T  12926922 agtagt 12926927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 776 - 959
Target Start/End: Original strand, 10308369 - 10308553
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10308369 ctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 10308468  T
Q  876 gctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggtaaa-actgaagcacaa 959  Q
    ||| ||  |||||| ||||||||||| |||| || | | || ||||||||||||||||| |||||||||||||| ||||||||||||    
T  10308469 gctttgtgtgactt-aagtcacgcaccactg-gcatgtgcgtgagttaacttgcgcaagttggccggtggtaaacactgaagcacaa 10308553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 829 - 979
Target Start/End: Complemental strand, 7014912 - 7014759
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttg 927  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||| ||| ||| ||||||||||||||    
T  7014912 tgcgtgagttaagtcacacagcgagacttaactcacgcacctcacaagctctacgtgac-ttaagtcacgcaccactaagcatatgcgcgagttaacttg 7014814  T
Q  928 cgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  7014813 cgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggacggtagtca 7014759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 43138840 - 43138634
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||||  |||||||||  | | ||||||||||||||  |||||||| | |||||||||||||| | | || |||||||||    || |||||||||    
T  43138840 ctcttcacctagcacattttactcgtgccctgcactttttctaaatataatcatgcgtgagttaagtaatgtagtgagacttaatatgcgtacctcacaa 43138741  T
Q  876 gctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgc-aagtggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| ||| |||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||| | ||||||||||||| ||||||||||||||    
T  43138740 gctctgcgtga-tttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaaattggccggtgataaaaactgaagcacaaacgtttcttggac 43138642  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  43138641 ggtagtca 43138634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 818 - 980
Target Start/End: Original strand, 22605376 - 22605541
Alignment:
Q  818 aaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgc 916  Q
    |||||||||||| ||||||||||||| ||||||| ||||||| |||||||||||||||||||| | |||| |||||||||||| || ||||||| ||| |    
T  22605376 aaatataaccctacgtgagttaagtcgcgcagcgtgacttaagtcacgcacctcacaagctctacgtgac-ttaagtcacgcaccattgagcctctacac 22605474  T
Q  917 gagttaacttgcgcaag-tggccggtggt-aaaactgaagcaca-acgtttcttggacggtagtcat 980  Q
    ||||||||||||||||| | ||||||||| |||||||||| | | |||||| ||||||||| |||||    
T  22605475 gagttaacttgcgcaagttagccggtggtaaaaactgaagaatatacgttttttggacggtggtcat 22605541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 830 - 944
Target Start/End: Original strand, 30858446 - 30858561
Alignment:
Q  830 gcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgc 928  Q
    ||||||||||||||| |||||| |||||||||||||||||| ||||||||||  |||| ||||||||   | || ||||||| |||||||||||||| ||    
T  30858446 gcgtgagttaagtcatgcagcgtgacttaactcacgcaccttacaagctctgtgtgac-ttaagtcataaaccattgagcctctacgcgagttaactcgc 30858544  T
Q  929 gcaag-tggccggtggt 944  Q
    ||||| |||||||||||    
T  30858545 gcaagttggccggtggt 30858561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 813 - 979
Target Start/End: Complemental strand, 1671480 - 1671312
Alignment:
Q  813 ttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagccta 911  Q
    |||||||||||| | |||  ||||||||||||||||||| ||||||| |||||||||| ||||| | |||  ||| |||||||||| | ||||||||||     
T  1671480 ttttcaaatatacctctgtatgagttaagtcacgcagcgtgacttaattcacgcaccttacaagttttgcaggac-ttaagtcacgaaccactgagcctc 1671382  T
Q  912 tacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    | |||||||||||   |||||| ||| ||||||| |||||||||| || ||||||| ||||||||| ||||    
T  1671381 tgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaacgttt-ttggacggtggtca 1671312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 15399016 - 15399088
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 848  Q
    |||||||||| |||||||| | |  |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  15399016 ctcttcacccagcacatttcgctcacgccctgcatgtttttcaaatataatcctgcgtgagttaagtcacgca 15399088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 818 - 870
Target Start/End: Original strand, 3781856 - 3781908
Alignment:
Q  818 aaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    ||||||| ||||||||||||||| |||||||||| |||||||||||| |||||    
T  3781856 aaatatacccctgcgtgagttaaatcacgcagcgtgacttaactcacacacct 3781908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 833 - 944
Target Start/End: Complemental strand, 5770696 - 5770585
Alignment:
Q  833 tgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgca 931  Q
    ||||||||||||||| ||| |||||||||||||||||| | ||||| ||| || | |||||||||||| ||||| |||| | |||||| |||||  ||||    
T  5770696 tgagttaagtcacgctgcgtgacttaactcacgcaccttataagctttgcgtggc-ttaagtcacgcaccactg-gcctgtgcgcgagctaactcacgca 5770599  T
Q  932 a-gtggccggtggt 944  Q
    | ||||||||||||    
T  5770598 aggtggccggtggt 5770585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 837 - 925
Target Start/End: Original strand, 21482862 - 21482949
Alignment:
Q  837 ttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaact 925  Q
    ||||||||||||||| ||||||||| || ||||| | ||||||||| |||| |||||||||||| |||| ||||||| | ||||||||||    
T  21482862 ttaagtcacgcagcgtgacttaactaacacaccttataagctctgcgtgac-ttaagtcacgcaccact-agcctatgcacgagttaact 21482949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 49150491 - 49150563
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 848  Q
    |||||||||| ||| |||| | | ||| ||||||  |||| |||||||||||||| |||||||||||||||||    
T  49150491 ctcttcacccagcatatttcgctcgcgtcctgcatgttttccaaatataaccctgtgtgagttaagtcacgca 49150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 835 - 925
Target Start/End: Complemental strand, 3660309 - 3660220
Alignment:
Q  835 agttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcacactgagcctatacgcgagttaact 925  Q
    ||||||||| | ||||| |||||||||  ||||||| | ||||||||| |||||| |||||||||||  |  |||||| ||||||||||||    
T  3660309 agttaagtcgcacagcgtgacttaactagcgcaccttataagctctgcgtgactt-aagtcacgcaccattggcctatgcgcgagttaact 3660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 829 - 863
Target Start/End: Original strand, 5770662 - 5770696
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactca 863  Q
    ||||||||||||||||||||||| |||||||||||    
T  5770662 tgcgtgagttaagtcacgcagcgtgacttaactca 5770696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 776 - 809
Target Start/End: Complemental strand, 23943709 - 23943676
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgca 809  Q
    ||||||||||||||||||||| ||||||||||||    
T  23943709 ctcttcaccctgcacattttgcttgcgccctgca 23943676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 1e-59; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 776 - 977
Target Start/End: Original strand, 54703533 - 54703737
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||    
T  54703533 ctcttcaccctgcacattttgctcgcgccctgcacttttttcaaatataaccctgcgtgagttaagtaacgcagcgagacttaacatacgcacctcacaa 54703632  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| ||||||| |||| ||||| ||||||  ||||||||||||||||||| ||| ||||||| |||||||||| || ||||||||||||||    
T  54703633 gctctgcgtgac-ttaagtcgcgcaccactgggcctatgtgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagaacaaacgtttcttggac 54703731  T
Q  972 ggtagt 977  Q
    ||||||    
T  54703732 ggtagt 54703737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 812 - 979
Target Start/End: Original strand, 42118906 - 42119076
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcct 910  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||| |||| |||||||||||| ||||||||||    
T  42118906 tttttcaaatataaccctgcgtgagttaagtcacgctgcgtgacttaactcacacacctcacaagttctgcgtgac-ttaagtcacgcaccactgagcct 42119004  T
Q  911 atacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
     |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||| | ||||||| ||||    
T  42119005 ctacgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttttgggacggtggtca 42119076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 812 - 958
Target Start/End: Complemental strand, 37694667 - 37694519
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcct 910  Q
    |||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||    
T  37694667 ttttccaaatatacccctgcgtgagttaagtcacgcagcgtgacttaactcacgcacctcacaagctctgcatgac-ttaagtcacgcaccactgagcct 37694569  T
Q  911 atacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcaca 958  Q
     ||||||||||||| |||||||| ||||||||||| ||||||||||||||    
T  37694568 ctacgcgagttaacctgcgcaagttggccggtggtaaaaactgaagcaca 37694519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 34939550 - 34939344
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||||||| | |||||||| | | ||||||||||   ||||||||||| |||||||||||||||||||||| |||| |||||||| ||||||||||||||    
T  34939550 ctcttcactcagcacatttcgctcgcgccctgcatgattttcaaatatgaccctgcgtgagttaagtcacgtagcgtgacttaacacacgcacctcacaa 34939451  T
Q  876 gctctgcttgactttaagtcacgc-acactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| ||| ||||||| ||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||| ||||| ||||||||||| ||    
T  34939450 gctctgcatgac-ttatgtcacgcaacactgagcctatgcgcgagttaacttccgcaagttggccggtggtaaaaactgcagcacaaacgtttcttgaac 34939352  T
Q  972 ggtagtca 979  Q
    ||| ||||    
T  34939351 ggtggtca 34939344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 776 - 979
Target Start/End: Complemental strand, 43502476 - 43502270
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    |||| ||||| |||||||||| ||||||||||||    ||  ||||||||| ||||| ||||||||| ||||||||||| |||||   ||||||||||||    
T  43502476 ctctacacccagcacattttgcttgcgccctgcaaccgttctaaatataactctgcgcgagttaagtaacgcagcgagatttaacatgcgcacctcacaa 43502377  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggac 971  Q
    ||||||| |||| ||||||| |||| |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  43502376 gctctgcgtgac-ttaagtcgcgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaagcacaaacgtttcttggac 43502278  T
Q  972 ggtagtca 979  Q
    ||||||||    
T  43502277 ggtagtca 43502270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 779 - 979
Target Start/End: Original strand, 52789294 - 52789497
Alignment:
Q  779 ttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagct 878  Q
    ||||||| | |||||| | | ||||||||||| ||||| |||||| | | |||||||||||||||| | ||||  ||||||| |||||||||||||| ||    
T  52789294 ttcacccagaacatttcgctcgcgccctgcacattttttaaatatgatcttgcgtgagttaagtcaagtagcgtcacttaacacacgcacctcacaaact 52789393  T
Q  879 ctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggt 974  Q
    |||| |||| |||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||||||    
T  52789394 ctgcgtgac-ttaagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggtcggtggtaaaaactgaagcacaaacgtttcttggacggt 52789492  T
Q  975 agtca 979  Q
    |||||    
T  52789493 agtca 52789497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 776 - 921
Target Start/End: Complemental strand, 36047083 - 36046938
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||     ||||||||||    
T  36047083 ctcttcaccctgcacattttgcttgcgccctgcacttttttcgaatataaccctgcgtgagttaagtaacgcagcgagacttaacatgtacacctcacaa 36046984  T
Q  876 gctctgcttgactttaagtcacgca-cactgagcctatacgcgagtt 921  Q
    ||| ||| |||| ||||||| |||| |||||||||||| ||| ||||    
T  36046983 gctttgcgtgac-ttaagtcgcgcaccactgagcctatgcgcaagtt 36046938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 776 - 879
Target Start/End: Complemental strand, 52032874 - 52032771
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaa 875  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52032874 ctcttcaccctgcacattttactcgcgccttgcacttttttcaaatttgaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcataa 52032775  T
Q  876 gctc 879  Q
    ||||    
T  52032774 gctc 52032771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 803 - 979
Target Start/End: Complemental strand, 33985613 - 33985434
Alignment:
Q  803 ccctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgc-ac 901  Q
    |||||||| ||||||||||||| |  || ||||||||||||||||| || |  |||||||||||||||||||| |||||| |||| ||||||||||| ||    
T  33985613 ccctgcacatttttcaaatatacctttgtgtgagttaagtcacgcaacgtggtttaactcacgcacctcacaaactctgcgtgac-ttaagtcacgcaac 33985515  T
Q  902 actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    ||  ||||| | |||||||||||||||||||| |||||||| || ||||||||||||| ||||||||||||||||| ||||    
T  33985514 acaaagcctctgcgcgagttaacttgcgcaagttggccggtagtaaaaactgaagcacaaacgtttcttggacggtggtca 33985434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 804 - 979
Target Start/End: Complemental strand, 54809167 - 54808989
Alignment:
Q  804 cctgcacttttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgcac-a 902  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||||| | |||||    |||||||| || || ||  |||||| ||||| | ||| |    
T  54809167 cctgcactttttccaaatataaccctacgtgagttaagtaacgcagcgatatttaacatgtgcacctcataatctatgtgtgactt-aagtcgcacacca 54809069  T
Q  903 ctgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcac-aacgtttcttggacggtagtca 979  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||| ||| ||||||||||||||||||    
T  54809068 ctgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaactgaaccacaaacatttcttggacggtagtca 54808989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 901 - 979
Target Start/End: Original strand, 51242831 - 51242912
Alignment:
Q  901 cactgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagca-caacgtttcttggacggtagtca 979  Q
    |||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||    
T  51242831 cactgagcctatgcgcgagttaacttgcgcaagttggccggtggtcaaaactgaagcataaacgttttttggacggtagtca 51242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 776 - 848
Target Start/End: Original strand, 47020012 - 47020084
Alignment:
Q  776 ctcttcaccctgcacattttgtttgcgccctgcacttttttcaaatataaccctgcgtgagttaagtcacgca 848  Q
    |||||||||| |||||||| | | ||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  47020012 ctcttcacccagcacatttcgctcgcgccctgcatgttttccaaatataaccttgcgtgagttaagtcacgca 47020084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 831 - 870
Target Start/End: Original strand, 2777925 - 2777964
Alignment:
Q  831 cgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  2777925 cgtgagttaagtcacgcagcgtgacttaactcacgcacct 2777964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 829 - 934
Target Start/End: Complemental strand, 9243057 - 9242953
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgcacctcacaagctctgcttgactttaagtcacgca-cactgagcctatacgcgagttaacttg 927  Q
    ||||||||||||||||| |  || |||||||||||| ||||| | || |||||| |||| |||||||||||| |||||||||| | ||||||||||||      
T  9243057 tgcgtgagttaagtcacactacgtgacttaactcacacaccttataatctctgcgtgac-ttaagtcacgcaccactgagcct-tccgcgagttaactca 9242960  T
Q  928 cgcaagt 934  Q
    |||||||    
T  9242959 cgcaagt 9242953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 889 - 956
Target Start/End: Original strand, 47020073 - 47020143
Alignment:
Q  889 ttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagca 956  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  47020073 ttaagtcacgcaccactgagcctctgcgcgagttaacttgcgcaagttggacggtggtaaaaactgaagca 47020143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 49261941 - 49261883
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    |||| |||||| | || ||||||||||||||||||||||  ||||||||||||||||||    
T  49261941 ttttccaaatacatccatgcgtgagttaagtcacgcagcatgacttaactcacgcacct 49261883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 889 - 959
Target Start/End: Complemental strand, 45043088 - 45043015
Alignment:
Q  889 ttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactgaagcacaa 959  Q
    ||||||||||||| ||||||||| || | ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  45043088 ttaagtcacgcaccactgagcctctatgtgagttaacttgcgtaagttggccggtggtaaaaactgaagcacaa 45043015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 814 - 870
Target Start/End: Complemental strand, 31936475 - 31936419
Alignment:
Q  814 tttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    ||||||| ||| ||||||||||||||||||||||  |  ||||||||||||||||||    
T  31936475 tttcaaaaatacccctgcgtgagttaagtcacgcgacttgacttaactcacgcacct 31936419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 901 - 948
Target Start/End: Complemental strand, 52032768 - 52032720
Alignment:
Q  901 cactgagcctatacgcgagttaacttgcgc-aagtggccggtggtaaaa 948  Q
    |||||||||||| ||||||||||||||||| || |||||||||||||||    
T  52032768 cactgagcctatgcgcgagttaacttgcgcaaattggccggtggtaaaa 52032720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 891 - 948
Target Start/End: Complemental strand, 779533 - 779474
Alignment:
Q  891 aagtcacgcaca-ctgagcctatacgcgagttaacttgcgcaag-tggccggtggtaaaa 948  Q
    |||||||||||| |||||||| | ||| |||||||||||||||| |||||||||||||||    
T  779533 aagtcacgcacaactgagcctcttcgcaagttaacttgcgcaagttggccggtggtaaaa 779474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 863
Target Start/End: Complemental strand, 13856216 - 13856165
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactca 863  Q
    ||||||||||||| || || |||||||||||||||| ||| |||||||||||    
T  13856216 tttttcaaatatacccatgtgtgagttaagtcacgctgcgtgacttaactca 13856165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 867
Target Start/End: Complemental strand, 42118958 - 42118923
Alignment:
Q  832 gtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    |||||||||||||||||||| |||||||||||||||    
T  42118958 gtgagttaagtcacgcagcgtgacttaactcacgca 42118923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 812 - 870
Target Start/End: Complemental strand, 13867937 - 13867879
Alignment:
Q  812 tttttcaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcacgcacct 870  Q
    ||||||||||||| || || |||||| ||||||||| ||| ||||||||||| ||||||    
T  13867937 tttttcaaatatacccttgtgtgagtaaagtcacgctgcgtgacttaactcatgcacct 13867879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 829 - 867
Target Start/End: Original strand, 37694612 - 37694650
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgca 867  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  37694612 tgcgtgagttaagtcacgctgcgtgacttaactcacgca 37694650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 829 - 866
Target Start/End: Complemental strand, 43139660 - 43139623
Alignment:
Q  829 tgcgtgagttaagtcacgcagcgagacttaactcacgc 866  Q
    |||||||||||||||||||||||  |||||||||||||    
T  43139660 tgcgtgagttaagtcacgcagcgtaacttaactcacgc 43139623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 856 - 979
Target Start/End: Original strand, 20069 - 20195
Alignment:
Q  856 ttaactcacgcacctcacaagctctgcttgactttaagtcacgcac-actgagcctatacgcgagttaacttgcgcaag-tggccggtggt-aaaactga 952  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||| |||    
T  20069 ttaactcacgcacctcacaagctttgcgtgactt-aagtcacgcaccactgagcctatgcgcgagttaacttgcgcaagttggccggtggtaaaaattga 20167  T
Q  953 agcac-aacgtttcttggacggtagtca 979  Q
    ||||| ||||||||||||||||||||||    
T  20168 agcacaaacgtttcttggacggtagtca 20195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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