View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085R-Insertion-2 (Length: 859)

Name: NF2085R-Insertion-2
Description: NF2085R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085R-Insertion-2
NF2085R-Insertion-2
[»] chr2 (4 HSPs)
chr2 (11-774)||(31319206-31319969)
chr2 (238-403)||(36769592-36769757)
chr2 (279-341)||(27147461-27147523)
chr2 (754-827)||(36769178-36769251)
[»] chr3 (5 HSPs)
chr3 (45-430)||(26378323-26378718)
chr3 (206-416)||(11775470-11775680)
chr3 (279-416)||(14046998-14047135)
chr3 (61-113)||(11775726-11775778)
chr3 (77-112)||(14047309-14047344)
[»] chr6 (4 HSPs)
chr6 (182-406)||(7906441-7906665)
chr6 (206-412)||(17351149-17351357)
chr6 (219-314)||(115906-116001)
chr6 (61-113)||(17351051-17351103)
[»] chr4 (1 HSPs)
chr4 (151-406)||(6631766-6632024)
[»] chr7 (4 HSPs)
chr7 (200-315)||(32929532-32929647)
chr7 (41-113)||(32929374-32929447)
chr7 (230-341)||(15484904-15485015)
chr7 (200-309)||(4276728-4276837)
[»] chr8 (1 HSPs)
chr8 (61-115)||(9264121-9264175)


Alignment Details
Target: chr2 (Bit Score: 677; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 11 - 774
Target Start/End: Complemental strand, 31319969 - 31319206
Alignment:
Q  11 tgatgggctgcaatgtgatggtagtatcataaaaaggatccctagcctcaccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgct 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31319969 tgatgggctgcaatgtgatggtagtatcataaaaaggatccctagccttaccaaatgacacagcaatagcattggggaatgacatcctcccaatgttact 31319870  T
Q  111 actttgagcta----atagggacttgtaatggggaaagattgcctcccattaacagggcccaaaagaggatttggactcaaagcagcaatgttagagttc 206  Q
    ||| |||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31319869 actctgagctagggaagagggacttgtaatggggaaagattgcctcccattaacagggcccaaaagaggatttggactcaaagcagcaattttagagttc 31319770  T
Q  207 ctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgca 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31319769 ctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgca 31319670  T
Q  307 tatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgt 406  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31319669 tatccagtaatatgggaatagattcctcatcatttggcttagcctcccctatgacatgcttagaaccactttcaagcaattcaaatgagttgtgaagtgt 31319570  T
Q  407 gagattcatgtctccaatgttctggctctgatcattagcatgaagttcagtgttgaggactgcaatttcattgctttcaggagctgatatttcaccttcc 506  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31319569 gagattcatgtctccaatattctggctctgatcattagcatgaagttcagtgttgaggactgcaatttcattgctttcaggagctgatacttcaccttcc 31319470  T
Q  507 tcaaaatcatcaggtgaaacaaaaggggccctcctgaatgtcatcatgagaagagaccttagcagacttattaccaattgctgcaatgtgagggtgtact 606  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31319469 tcaaaatcatcagttgaaacaaaagggg-cctcctgaatgtcatcatgagaagataccttagcagacttattaccaattgctgcaatgtgagggtgtact 31319371  T
Q  607 tgtgcattaacagttatagcatcaattgtattgacaggaaatttagcacttttcttattggccaaatcagcttttgattgagctctttggttcacattat 706  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31319370 tgtgcattaacagttatagcatcaactgtattgacaggaaatttagcacttttcttattggccaaatcagcttttgattgagctctttggttcacattat 31319271  T
Q  707 taactctcttagtaacttgaacattggtagcagcatttaccttggagcaagcatgaatgctatgtcct 774  Q
    ||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31319270 ta---ctcttagtaacttgaacattggtagcagcatttatcttggagcaagcatgaatgctatgtcct 31319206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 238 - 403
Target Start/End: Complemental strand, 36769757 - 36769592
Alignment:
Q  238 ttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatc 337  Q
    ||||| ||||||||||||| || ||| ||||  ||||||| |||||| ||||||||||||| ||||||||||||| ||  |||||| | |||||||||||    
T  36769757 ttgtgctatgagtcaatttttctttcgctagataattgtcctccacatttggatttttatccatttgcatatccaatataatgggattggattcctcatc 36769658  T
Q  338 atttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaag 403  Q
      || ||||||||||||||||||||||| ||||  || |||||||||| |||||||| ||||||||    
T  36769657 tcttggcttagcctcccctatgacatgcacagagtcattttcaagcaactcaaatgaattgtgaag 36769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 27147461 - 27147523
Alignment:
Q  279 tccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcattt 341  Q
    |||||| ||||||||||||| |||||||||||||||    ||||| ||||||||| |||||||    
T  27147461 tccacacttggatttttatccatttgcatatccagttcagtgggattagattccttatcattt 27147523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 827
Target Start/End: Complemental strand, 36769251 - 36769178
Alignment:
Q  754 caagcatgaatgctatgtcctatggttttgcagtgggaacaaaacagagggtatttttcatactgaaccatgac 827  Q
    |||||||||||| ||||||||| ||   |||| || | |||||| ||||| ||||| |||||||||||||||||    
T  36769251 caagcatgaatgttatgtcctaaggacctgcaatgagcacaaaaaagaggatatttctcatactgaaccatgac 36769178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 1e-55; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 45 - 430
Target Start/End: Original strand, 26378323 - 26378718
Alignment:
Q  45 aggatccctagcctcaccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctactttgagct----aatagggacttgtaatgggg 140  Q
    |||||||||||| ||| ||| |||||||||| || ||||||||||||||| |||||||||||||||||| ||| ||    ||||||||||||||||||||    
T  26378323 aggatccctagcatcatcaagtgacacagcagtaacattggggaatgacaacctcccaatgttgctactctgatctagagaatagggacttgtaatgggg 26378422  T
Q  141 aaagattgcctcccattaacagggcccaaaagaggatt---tggactcaaagcagcaatgttagagttcctttttaccaaattaccaggattctctaagt 237  Q
    ||||  ||||||| |||||||||| |||| | ||||||   |  ||||||||||||||   |||||||||||||  |||| ||||||||||||||||       
T  26378423 aaagtctgcctcctattaacagggtccaacacaggattaccttaactcaaagcagcaagtgtagagttccttttatccaatttaccaggattctctataa 26378522  T
Q  238 ttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatc 337  Q
    ||| | |||||||||| || ||| ||  ||||||| |  |  ||||| ||||||||||||| | ||||||| ||||||   ||||| | | |||||||||    
T  26378523 ttgagctatgagtcaagttttccctctatagggaacttccccccacatttggatttttatccagttgcataaccagtatagtgggagtgggttcctcatc 26378622  T
Q  338 atttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgtgagattca---tgtctccaatgttctg 430  Q
    |  | |||||||||||||| ||||||| ||||   || |||||||||| ||||||||||||||||| |||| |||||   |||||||| |||||||    
T  26378623 acatggcttagcctcccctgtgacatgttcagcgtcattttcaagcaactcaaatgagttgtgaagagtgatattcaagttgtctccattgttctg 26378718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 206 - 416
Target Start/End: Complemental strand, 11775680 - 11775470
Alignment:
Q  206 cctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgc 305  Q
    |||||||||||| |||| ||||| ||||| ||| ||| |||||  ||| || |||||||||||||| || || |||||| ||| ||||||| | ||||||    
T  11775680 cctttttaccaatttactaggatcctctatgttagtgctatgaaccaagttttccttccctagggacttttcctccacatttgaatttttagccatttgc 11775581  T
Q  306 atatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtg 405  Q
    ||||||| ||  |||||| |||| ||||  ||| ||   ||||||||| || | ||| ||||| || || ||||||| || | |||||||||||| ||||    
T  11775580 atatccaatataatgggagtagagtccttgtcacttgatttagcctccgctgtaacaggctcataatcattttcaagtaacttaaatgagttgtggagtg 11775481  T
Q  406 tgagattcatg 416  Q
    |||||||||||    
T  11775480 tgagattcatg 11775470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 279 - 416
Target Start/End: Complemental strand, 14047135 - 14046998
Alignment:
Q  279 tccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccacttt 378  Q
    |||| |||||||||||||||||||||||||||||     |||| || ||| ||||  ||| ||  ||||||||||||||| ||| |||||| | |    |    
T  14047135 tccataattggatttttatcaatttgcatatccaaagtaatggaaacagagtccttttcacttgacttagcctcccctataacaggctcagtatcctgat 14047036  T
Q  379 caagcaattcaaatgagttgtgaagtgtgagattcatg 416  Q
    ||||||| |||||||||||||||||||||| |||||||    
T  14047035 caagcaactcaaatgagttgtgaagtgtgatattcatg 14046998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 113
Target Start/End: Complemental strand, 11775778 - 11775726
Alignment:
Q  61 ccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctact 113  Q
    ||||||||||||| | || |||||||||||||||||||||||||| |||||||    
T  11775778 ccaaatgacacagaagtaacattggggaatgacatcctcccaatgatgctact 11775726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 112
Target Start/End: Complemental strand, 14047344 - 14047309
Alignment:
Q  77 tagcattggggaatgacatcctcccaatgttgctac 112  Q
    |||||||||||||||||| |||||||||||||||||    
T  14047344 tagcattggggaatgacagcctcccaatgttgctac 14047309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 182 - 406
Target Start/End: Original strand, 7906441 - 7906665
Alignment:
Q  182 actcaaagcagcaatgttagagttcctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttcc 281  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||| | | |||||||||||||| ||| |||| | |||||||| ||| ||||| ||||||    
T  7906441 actcaaagcaacaaagttagagttcctttttaccaagttaccagtactatctaagtttgtgttgtgattcaagtcctccttccttagtgaattatcttcc 7906540  T
Q  282 acaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaa 381  Q
    ||| |||||||||||||| | |||||||||||||| ||||| || ||||| |||||| ||  |||||| | |||||| |||||||||| ||||| |||||    
T  7906541 acatttggatttttatcactgtgcatatccagtaaaatggggatcgattcttcatcacttgtcttagcataccctataacatgctcagtaccaccttcaa 7906640  T
Q  382 gcaattcaaatgagttgtgaagtgt 406  Q
    ||| |||||| || |||||||||||    
T  7906641 gcagttcaaaggaattgtgaagtgt 7906665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 206 - 412
Target Start/End: Original strand, 17351149 - 17351357
Alignment:
Q  206 cctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgc 305  Q
    |||||||||| | |||| ||||| ||||| ||| ||| |||||  ||| || |||||||||||||| || || |||||| ||||||||||| | ||||||    
T  17351149 cctttttaccgatttactaggatcctctatgttagtgctatgaaccaagttttccttccctagggacttttcctccacatttggatttttagccatttgc 17351248  T
Q  306 atatc--cagtaatatgggaatagattcctcatcatttagcttagcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaag 403  Q
    |||||  || ||  |||||| |||| ||||  ||| |   ||||||||||||||| ||| ||||| || || ||||||| || |||||||||||||| ||    
T  17351249 atatccacaatataatgggagtagagtccttgtcactcgacttagcctcccctataacaggctcaaaatcattttcaagtaactcaaatgagttgtggag 17351348  T
Q  404 tgtgagatt 412  Q
    |||||||||    
T  17351349 tgtgagatt 17351357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 116001 - 115906
Alignment:
Q  219 ttaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagt 314  Q
    ||||||| || ||||  ||||||||| |||||||   | |||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  116001 ttaccagtatcctctctgtttgtgttttgagtcatgctatccttccctagggaattgtcctccacacttggatttttaacaatttgcatatccagt 115906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 17351051 - 17351103
Alignment:
Q  61 ccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctact 113  Q
    ||||||||||||| | || ||| |||||||||||||||||||||| |||||||    
T  17351051 ccaaatgacacagaagtaacatcggggaatgacatcctcccaatgatgctact 17351103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 151 - 406
Target Start/End: Original strand, 6631766 - 6632024
Alignment:
Q  151 tcccattaacagggcccaaaagaggatt---tggactcaaagcagcaatgttagagttcctttttaccaaattaccaggattctctaagtttgtgttatg 247  Q
    ||||||||||||| ||||||| ||| ||   || ||||||| || ||| |||||| ||| | |||  ||  ||||||| | |||||||| ||||||||||    
T  6631766 tcccattaacaggacccaaaaaagggttacatgtactcaaatcaacaaggttagatttcatatttgtcatgttaccagtactctctaagattgtgttatg 6631865  T
Q  248 agtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagattcctcatcatttagctta 347  Q
    ||| |||| |||||||| |||  |||| ||| || || || ||||||| ||||| | |||||||| ||  |||||  ||||||| |||||| | |  |||    
T  6631866 agtaaattcctccttccttagtaaattctctgccccattttgatttttgtcaatgtacatatccaatagaatggggttagattcttcatcactgatttta 6631965  T
Q  348 gcctcccctatgacatgctcagaaccactttcaagcaattcaaatgagttgtgaagtgt 406  Q
    || |||||||| || ||||||| | || |||||||||||||||| || || ||||||||    
T  6631966 gcatcccctataacctgctcagcatcattttcaagcaattcaaaagaattttgaagtgt 6632024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 32929532 - 32929647
Alignment:
Q  200 agagttcctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatca 299  Q
    ||||||| |||| ||||| |||||| ||| ||||| ||||||| | |||| |||  || || || |||||||||| ||| ||||| |||||||||||||     
T  32929532 agagttctttttgaccaagttaccaagatcctctatgtttgtgctttgagccaagatcaccatctctagggaattttctgccacatttggatttttatcc 32929631  T
Q  300 atttgcatatccagta 315  Q
    ||||||| ||||||||    
T  32929632 atttgcaaatccagta 32929647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 32929374 - 32929447
Alignment:
Q  41 aaaaaggatccctagcctcaccaaatgacacagcaatagcatt-ggggaatgacatcctcccaatgttgctact 113  Q
    ||||||||| |||||| ||||||| ||||||| || ||||||| |||| |||||| ||||||||| ||||||||    
T  32929374 aaaaaggattcctagcatcaccaagtgacacaacagtagcattggggggatgacagcctcccaattttgctact 32929447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 341
Target Start/End: Original strand, 15484904 - 15485015
Alignment:
Q  230 ctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatcaatttgcatatccagtaatatgggaatagat 329  Q
    ||||| ||| ||||||||| || | | || ||| ||||| ||| | || |||||| ||||||||||||| |||||||||||||||    ||||| |||||    
T  15484904 ctctatgttagtgttatgattccaatgcttcttgcctagagaaatttcctccacacttggatttttatccatttgcatatccagtgcagtgggattagat 15485003  T
Q  330 tcctcatcattt 341  Q
    |||| |||||||    
T  15485004 tccttatcattt 15485015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 4276837 - 4276728
Alignment:
Q  200 agagttcctttttaccaaattaccaggattctctaagtttgtgttatgagtcaatttctccttccctagggaattgtcttccacaattggatttttatca 299  Q
    ||||||| |||||||||  |||| ||||||||||||||||||| ||||  |||    |||||||| |||||| || || || ||| ||  ||||||||||    
T  4276837 agagttcatttttaccactttactaggattctctaagtttgtgctatggttcagggcctccttccttagggagttttcctcaacacttatatttttatca 4276738  T
Q  300 atttgcatat 309  Q
     |||||||||    
T  4276737 ctttgcatat 4276728  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 9264175 - 9264121
Alignment:
Q  61 ccaaatgacacagcaatagcattggggaatgacatcctcccaatgttgctacttt 115  Q
    ||||||||||||| | || |||||||||||||||||||||||||| |||||||||    
T  9264175 ccaaatgacacagaactaacattggggaatgacatcctcccaatgatgctacttt 9264121  T

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