View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2085R-Insertion-3 (Length: 441)

Name: NF2085R-Insertion-3
Description: NF2085R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2085R-Insertion-3
NF2085R-Insertion-3
[»] chr8 (14 HSPs)
chr8 (75-441)||(15850399-15850757)
chr8 (117-430)||(28420938-28421259)
chr8 (137-430)||(15131912-15132212)
chr8 (123-441)||(18603002-18603316)
chr8 (76-390)||(44502153-44502469)
chr8 (126-402)||(1225962-1226246)
chr8 (123-327)||(37855063-37855276)
chr8 (76-355)||(27401685-27401967)
chr8 (88-339)||(3159708-3159959)
chr8 (231-377)||(18393548-18393693)
chr8 (228-354)||(10623253-10623379)
chr8 (135-195)||(44508418-44508478)
chr8 (292-378)||(13097519-13097604)
chr8 (313-394)||(44509336-44509416)
[»] chr3 (20 HSPs)
chr3 (118-435)||(11410581-11410907)
chr3 (75-441)||(43921876-43922244)
chr3 (124-441)||(21408784-21409118)
chr3 (117-441)||(26565208-26565530)
chr3 (99-439)||(17715776-17716127)
chr3 (99-439)||(19017005-19017356)
chr3 (292-435)||(14218479-14218623)
chr3 (231-429)||(10516110-10516308)
chr3 (148-402)||(27063668-27063931)
chr3 (118-229)||(27111150-27111261)
chr3 (231-430)||(10657382-10657580)
chr3 (341-423)||(49861099-49861181)
chr3 (129-229)||(14218362-14218463)
chr3 (376-437)||(27109669-27109730)
chr3 (256-339)||(49860462-49860545)
chr3 (342-430)||(27109278-27109366)
chr3 (179-229)||(49860395-49860444)
chr3 (292-355)||(29697032-29697095)
chr3 (254-316)||(2227278-2227340)
chr3 (95-127)||(26565192-26565224)
[»] chr7 (24 HSPs)
chr7 (130-441)||(37338697-37339014)
chr7 (74-441)||(27616185-27616544)
chr7 (117-441)||(46532751-46533084)
chr7 (75-229)||(44572571-44572714)
chr7 (130-219)||(10678250-10678338)
chr7 (167-399)||(32716489-32716728)
chr7 (360-435)||(10678441-10678516)
chr7 (230-337)||(45215999-45216106)
chr7 (231-339)||(22290882-22290990)
chr7 (75-185)||(45216112-45216214)
chr7 (256-384)||(6439784-6439915)
chr7 (124-198)||(11812685-11812759)
chr7 (349-435)||(44182388-44182474)
chr7 (292-338)||(44572501-44572547)
chr7 (118-198)||(5741578-5741658)
chr7 (75-127)||(8799619-8799671)
chr7 (148-199)||(9730090-9730141)
chr7 (124-197)||(11815688-11815761)
chr7 (149-229)||(44182753-44182831)
chr7 (151-198)||(11820705-11820752)
chr7 (137-198)||(11814575-11814636)
chr7 (284-337)||(43837239-43837292)
chr7 (150-198)||(11817027-11817075)
chr7 (118-198)||(43837405-43837485)
[»] chr5 (7 HSPs)
chr5 (74-430)||(32676579-32676930)
chr5 (75-277)||(40837667-40837872)
chr5 (135-389)||(38989237-38989491)
chr5 (292-435)||(40837984-40838125)
chr5 (123-199)||(41815795-41815870)
chr5 (123-229)||(10613127-10613232)
chr5 (75-120)||(39732276-39732321)
[»] chr6 (15 HSPs)
chr6 (77-429)||(12843766-12844120)
chr6 (123-424)||(1255611-1255924)
chr6 (123-424)||(14494389-14494698)
chr6 (123-431)||(17539920-17540236)
chr6 (126-424)||(56914-57209)
chr6 (75-339)||(19294244-19294511)
chr6 (148-441)||(19542065-19542368)
chr6 (76-299)||(34011225-34011451)
chr6 (123-299)||(34013440-34013625)
chr6 (124-378)||(2601994-2602255)
chr6 (156-229)||(12790571-12790643)
chr6 (135-317)||(34708843-34709034)
chr6 (313-429)||(34709054-34709169)
chr6 (360-420)||(34011158-34011218)
chr6 (360-420)||(34013632-34013692)
[»] chr2 (18 HSPs)
chr2 (75-430)||(26575930-26576279)
chr2 (75-326)||(32200870-32201124)
chr2 (75-430)||(9929492-9929867)
chr2 (123-441)||(34409514-34409842)
chr2 (116-395)||(44649945-44650224)
chr2 (137-429)||(27003952-27004255)
chr2 (123-229)||(41848922-41849027)
chr2 (229-439)||(4748015-4748224)
chr2 (148-339)||(13037236-13037436)
chr2 (314-402)||(15990040-15990128)
chr2 (123-186)||(4748255-4748318)
chr2 (360-431)||(13039027-13039098)
chr2 (360-430)||(32200786-32200856)
chr2 (135-199)||(18724894-18724959)
chr2 (76-127)||(38783859-38783910)
chr2 (123-374)||(17651162-17651421)
chr2 (86-128)||(32212335-32212377)
chr2 (228-297)||(16661253-16661322)
[»] chr4 (16 HSPs)
chr4 (227-430)||(17732789-17732993)
chr4 (244-441)||(31734528-31734722)
chr4 (76-430)||(45612383-45612735)
chr4 (226-441)||(40289086-40289299)
chr4 (74-318)||(54305516-54305763)
chr4 (117-296)||(55680634-55680822)
chr4 (75-229)||(658575-658722)
chr4 (319-402)||(3419960-3420042)
chr4 (227-433)||(44507704-44507909)
chr4 (235-392)||(2641164-2641321)
chr4 (75-127)||(31734419-31734471)
chr4 (256-338)||(24614581-24614664)
chr4 (123-173)||(50310251-50310301)
chr4 (315-422)||(658430-658537)
chr4 (135-185)||(35529482-35529533)
chr4 (152-197)||(40289806-40289851)
[»] chr1 (15 HSPs)
chr1 (117-431)||(32740747-32741066)
chr1 (76-401)||(23431728-23432063)
chr1 (117-438)||(9148935-9149261)
chr1 (148-439)||(48632518-48632812)
chr1 (148-402)||(7021540-7021806)
chr1 (292-394)||(126333-126435)
chr1 (227-339)||(18476522-18476635)
chr1 (227-379)||(3954966-3955117)
chr1 (342-430)||(18488339-18488427)
chr1 (123-192)||(10171639-10171708)
chr1 (118-199)||(16426330-16426411)
chr1 (231-378)||(3387675-3387821)
chr1 (123-198)||(30883217-30883292)
chr1 (127-199)||(50127497-50127569)
chr1 (228-279)||(125194-125245)
[»] scaffold0325 (1 HSPs)
scaffold0325 (148-384)||(12806-13051)
[»] scaffold0019 (1 HSPs)
scaffold0019 (256-402)||(70042-70190)
[»] scaffold1723 (1 HSPs)
scaffold1723 (161-306)||(404-557)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 75 - 441
Target Start/End: Complemental strand, 15850757 - 15850399
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    ||||||| |||||||||||||| |||||||||||| |||||||| | ||||||      |||||||| |||||||||||||||||||||||||||||||     
T  15850757 ctatgaaacatggactccgacacggacacctgacacgacactgatatggacac------ttcgacactgttagtgtaaaaaatataggacaccgacacca 15850664  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagtta 264  Q
     ||  ||||||||||||||||||||||  | ||||||||||||||||||||||||          |||| |||||||||||||||||| |||||||||||    
T  15850663 ttatgtatatattaatttatttatagatag-tctaaaatgaaaatcaaaatacatatataagtatctaatttgagcaaattatttcattagaaaaagtta 15850565  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattg 364  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||           ||||||||||||||||| |||    
T  15850564 taaaacaagatatcacagtatttgacatttatttattcatctactatcaaaaaagctaaaaatgttat-----------atgtctataacctcccagttg 15850476  T
Q  365 atcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagata 441  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||    
T  15850475 atcaacatttttcaaaacatatgtaactcttgtatctacggaatgtggaagcaagagagaaaaaaatatttcagata 15850399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 117 - 430
Target Start/End: Original strand, 28420938 - 28421259
Alignment:
Q  117 gacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||| |||| |||||| | ||||||| || |||| |||||||||||||||||||||  || |||||| |||||||||||| |||| | |||||||||||    
T  28420938 gacactgacatggacacgttgacaccgctaatgtagaaaatataggacaccgacaccattacatatatgttaatttatttaaagacgg-tctaaaatgaa 28421036  T
Q  217 aatcaaaatacatcta----------acttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatct 306  Q
    ||| ||||||||| ||          |||||||||| |||| |||| |||||||||| || |||||||||||| |  |||| || |||||||||||||||    
T  28421037 aattaaaatacatatataaacatttaacttgagcaatttatgtcattagaaaaagttttacaacaagatatcatatgatttgacctttatttattcatct 28421136  T
Q  307 attatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaagga 406  Q
    | |||||||||||||||||| | ||||||||||  ||||||||||||||  | |||||||||| ||||||||||| |||||||||||||||||||| ||     
T  28421137 actatcaaaaaagctaaaaacgatataatcaactataatgtctataacc-actaattgatcaagatttctcaaaatatatgtaactcttgtatctatggt 28421235  T
Q  407 atgtggaagcaagagagacaaaaa 430  Q
     || |||||| ||||||| |||||    
T  28421236 gtgcggaagcgagagagaaaaaaa 28421259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 137 - 430
Target Start/End: Complemental strand, 15132212 - 15131912
Alignment:
Q  137 gacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat------- 229  Q
    ||||||| || ||||||| |||||||||||| ||||||||| |||||| |||||||||| | |||| | | |||||||||||| |||||||||           
T  15132212 gacaccgctaatgtaaaatatataggacaccaacaccgctacatatatgttaatttattcaaagacagtt-taaaatgaaaattaaaatacatatataga 15132114  T
Q  230 ---ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 326  Q
       ||||||||||||| ||||| ||| | |||||||| || | |||||||||| || |||| |  |||||||||| ||||| |||| |||||||||||||    
T  15132113 catctaacttgagcaatttatt-catgataaaaagttctacagcaagatatcatagtatttgatctttatttatttatctactatcgaaaaagctaaaaa 15132015  T
Q  327 tgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagaca 426  Q
    || ||||||||||  |||||||||||||| || |||||||||| |||||| |||||||||||||||| |||||||  ||  ||  ||||||||||||| |    
T  15132014 tgatataatcaactataatgtctataacc-cctaattgatcaatatttctaaaaacatatgtaactcctgtatctctggtgtgcagaagcaagagagaaa 15131916  T
Q  427 aaaa 430  Q
    ||||    
T  15131915 aaaa 15131912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 123 - 441
Target Start/End: Complemental strand, 18603316 - 18603002
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| ||| || ||||||||||||||   || |||||||| |||||| |    
T  18603316 gacacagacacttcgacaccgttagtgtaaaaaatataggacaccggcacctctacatacatgttaatttatttatatcatg-tctaaaataaaaatcca 18603218  T
Q  223 aat----------acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatc 312  Q
    |||          ||||||||||| ||||| ||||||||| |||||||||| ||||||| ||||||  || |||| |  ||||||||                 
T  18603217 aatacatatctaaacatctaacttaagcaagttatttcattagaaaaagttttaaaacacgatatcgtagtatttgatctttattta------------- 18603131  T
Q  313 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatc-taaggaatgtg 411  Q
    ||||||||||||||||||||||||||   ||||||| ||  |  || ||||||||||||||||||||||||||||||||||||||||| ||  | |||||    
T  18603130 aaaaaagctaaaaatgttataatcaattgtaatgtcaat-tcaccctaattgatcaacatttctcaaaacatatgtaactcttgtatcataccgtatgtg 18603032  T
Q  412 gaagcaagagagacaaaaatgtttcagata 441  Q
    ||||||||||||| ||||||| || |||||    
T  18603031 gaagcaagagagaaaaaaatgctttagata 18603002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 76 - 390
Target Start/End: Original strand, 44502153 - 44502469
Alignment:
Q  76 tatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgc 175  Q
    ||||||||||||| ||||| | |||||||| ||| |||||||| || ||| ||      ||||||  | || ||||||||||||||||||||||||| |     
T  44502153 tatgaagcatggattccgatacggacacctaacacgacactgatacagacgcg------tcgacattgctaatgtaaaaaatataggacaccgacactgt 44502246  T
Q  176 taaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatcta----------acttgagcaaattatttcatcagaaaaagttat 265  Q
    || |||||| |||||||||||| |||  | ||||||| |||||  | ||||||| ||          |||||||||| ||||||||||| |||||||| |    
T  44502247 tacatatattttaatttatttaaagaaag-tctaaaacgaaaaatagaatacatatataaacatttaacttgagcaatttatttcatcataaaaagttct 44502345  T
Q  266 aaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattga 365  Q
    | |||||||||||| |  |||| || |||||||||||||||  ||||||||||| |||||||  ||||||||||  |||||||||||||| || |||  |    
T  44502346 acaacaagatatcatactatttgacctttatttattcatctgctatcaaaaaagttaaaaataatataatcaactataatgtctataacc-cctaatcaa 44502444  T
Q  366 tcaacatttctcaaaacatatgtaa 390  Q
    |||||||||||||||||||||||||    
T  44502445 tcaacatttctcaaaacatatgtaa 44502469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 126 - 402
Target Start/End: Original strand, 1225962 - 1226246
Alignment:
Q  126 acggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat 225  Q
    |||||||| |||||||| ||| | ||||| || || ||||| |||||| | | ||||||| |||||||||||||||  | ||||||||||||||||||||    
T  1225962 acggacacgtcgacaccattaatataaaatatttacgacactgacaccaccacatatatagtaatttatttatagaggg-tctaaaatgaaaatcaaaat 1226060  T
Q  226 acatct----------aacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaa 315  Q
    |||| |          || || ||||| |||||||||   ||||||||||||||||||||| || || |||| |  |||||||||||||||| |||||||    
T  1226061 acatatgtaaacatataaattaagcaatttatttcattgaaaaaagttataaaacaagataccagagtatttgatctttatttattcatctactatcaaa 1226160  T
Q  316 aaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 402  Q
    ||   |||||||||| |||||||| ||||| ||||||| |  | ||||||| |||||||||||| |||||| |||||||||||||||    
T  1226161 aatt-taaaaatgttgtaatcaactttaatttctataaacctctaattgattaacatttctcaacacatatttaactcttgtatcta 1226246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 123 - 327
Target Start/End: Original strand, 37855063 - 37855276
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    |||||||||||  | ||| || || |||||||||||||||||||||||||||||| |||||| || ||||||||| |||| | |||||||| ||||| |     
T  37855063 gacacggacacgccaacatcgataatgtaaaaaatataggacaccgacaccgctacatatatgttcatttatttaaagacgg-tctaaaataaaaattat 37855161  T
Q  223 aatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatc 312  Q
    |||||||          |||| ||||| || ||||||||| ||||||||||||  |||||||||| | || ||||||| |||||||||||||||| ||||    
T  37855162 aatacatatataaacatctaatttgagaaatttatttcatgagaaaaagttatgcaacaagatataatagtatttaacctttatttattcatctactatc 37855261  T
Q  313 aaaaaagctaaaaat 327  Q
    ||||| | |||||||    
T  37855262 aaaaaggttaaaaat 37855276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 355
Target Start/End: Original strand, 27401685 - 27401967
Alignment:
Q  76 tatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgc 175  Q
    |||||||||  ||||| |||| |||||||||| | ||||||||||||||||||       | |||||| || ||||||||| ||||||| || | |||||    
T  27401685 tatgaagcacagactctgacacggacacctgataggacactgacacggacacgc------caacaccgctaatgtaaaaaacataggacgccaataccgc 27401778  T
Q  176 taaatatatattaatttatttatagactgatctaaaatgaaaatcaaaata----------catctaacttgagcaaattatttcatcagaaaaagttat 265  Q
    ||  |||||||||||||||||||| | || ||| || ||| ||||||||||          |||||||||||||||| ||||||||| | ||||||||||    
T  27401779 tatctatatattaatttatttataaaatg-tctcaattgagaatcaaaatatatacatctgcatctaacttgagcaatttatttcattaaaaaaagttat 27401877  T
Q  266 aaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacc 355  Q
    | |||||||||  | || ||||  | ||||||||| |||||| |||  ||| |   ||||| ||| |||||||| |||||||||||||||    
T  27401878 ataacaagatacaatagaatttggcctttatttatccatctactattgaaagaaaaaaaaacgttgtaatcaactttaatgtctataacc 27401967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 88 - 339
Target Start/End: Original strand, 3159708 - 3159959
Alignment:
Q  88 actccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatatt 187  Q
    ||||||||| | ||| ||||||  |||| ||||| ||||| ||||| |  |||||| || ||||||||| ||||||||||||||| ||||  | |||| |    
T  3159708 actccgacacgaacatctgacacaacaccgacactgacactgacacgttaacaccgctaatgtaaaaaacataggacaccgacactgctacctgtatact 3159807  T
Q  188 aatttatttatagactgatctaaaatgaaaatcaaa-atacatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatt 286  Q
    ||||||||||| ||  |||||||| ||| ||||||| ||  ||||||||||||||| ||||||||| | |||||| | || |||||| ||  | || |||    
T  3159808 aatttatttat-gaaagatctaaattgagaatcaaatatgtatctaacttgagcaatttatttcattaaaaaaaggtctataacaagttacaatagtatt 3159906  T
Q  287 taacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaac 339  Q
    |  | ||||||||| |||||| |||| |||||  |||| | ||| ||||||||    
T  3159907 tggcctttatttatccatctaatatcgaaaaatttaaacacgttgtaatcaac 3159959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 377
Target Start/End: Complemental strand, 18393693 - 18393548
Alignment:
Q  231 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 330  Q
    |||||||| ||| |||||| || | |||||||| || |||||||||  | || |||| || ||||||||| |||||| ||||||||||  |||||| |||    
T  18393693 taacttgaacaatttattttattaaaaaaagttttataacaagataaaatagtatttgacctttatttatccatctactatcaaaaaatttaaaaacgtt 18393594  T
Q  331 ataatcaacgttaatgtctataacctcccaattgatcaacatttctc 377  Q
     |||||||| ||||||||||||||| |   |||||||||||||||||    
T  18393593 gtaatcaactttaatgtctataacc-cttgattgatcaacatttctc 18393548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 228 - 354
Target Start/End: Original strand, 10623253 - 10623379
Alignment:
Q  228 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaat 327  Q
    ||||||||||||||| ||||||| |   || || ||||||||||||||| ||||  || | || ||||||||| ||| || ||||||||||||||||||     
T  10623253 atctaacttgagcaacttatttctttcaaagaaattataaaacaagataccacaatatcttacttttatttatccatttagtatcaaaaaagctaaaaac 10623352  T
Q  328 gttataatcaacgttaatgtctataac 354  Q
     || | | |||| ||||||||||||||    
T  10623353 attgtgaccaactttaatgtctataac 10623379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 44508418 - 44508478
Alignment:
Q  135 tcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatt 195  Q
    |||||||||||| | ||||||||||||||||| |||||||||| ||| || ||||||||||    
T  44508418 tcgacaccgttaatctaaaaaatataggacacagacaccgctacataaatgttaatttatt 44508478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 378
Target Start/End: Original strand, 13097519 - 13097604
Alignment:
Q  292 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctca 378  Q
    |||||||||||||||| |||  |||||   ||||||||| |||||||| |||||||| ||||||||    |||||||||||||||||    
T  13097519 tttatttattcatctactattgaaaaattaaaaaatgttttaatcaactttaatgtccataacctcttg-ttgatcaacatttctca 13097604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 394
Target Start/End: Original strand, 44509336 - 44509416
Alignment:
Q  313 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactct 394  Q
    ||||||| |||| ||  |||||||||   ||||||||||||| ||| |||| ||||| |||||| |||||||||||||||||    
T  44509336 aaaaaagttaaacataatataatcaataataatgtctataac-tcctaattaatcaatatttcttaaaacatatgtaactct 44509416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 118 - 435
Target Start/End: Original strand, 11410581 - 11410907
Alignment:
Q  118 acacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaa 217  Q
    |||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||| |||||| |||||||||||||| || | ||||||||||||    
T  11410581 acacggacacagacactttgacaccgctagtgtaaaatatataggacaccgacaccgctacatatatgttaatttatttatatacgg-tctaaaatgaaa 11410679  T
Q  218 atcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatcta 307  Q
    ||||||||||||          ||||||||||||| ||||||||| |||||||||| ||||| ||||||||  || ||||||| ||||||||||||||||    
T  11410680 atcaaaatacatatttaagcatctaacttgagcaagttatttcattagaaaaagttctaaaagaagatatcgtagtatttaacctttatttattcatcta 11410779  T
Q  308 ttatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaa 407  Q
     ||||||||| ||||||| |||||||||||||  |||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| || |    
T  11410780 ctatcaaaaaggctaaaactgttataatcaacaataatatctattaccccctaattgatcaacatttctcaaaacatatgtaactcttgtatctacggta 11410879  T
Q  408 tgtggaagcaagagagacaaaaatgttt 435  Q
    |||||||| |||||||| ||||||||||    
T  11410880 tgtggaagtaagagagaaaaaaatgttt 11410907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 75 - 441
Target Start/End: Complemental strand, 43922244 - 43921876
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    ||||||||||||||||||||||  || |||||||| |||||||||||||||||      |||||||||| |||||||||||||||||||||||||||||     
T  43922244 ctatgaagcatggactccgacacagatacctgacacgacactgacacggacac------ttcgacaccgctagtgtaaaaaatataggacaccgacacct 43922151  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagtta 264  Q
    ||| ||| || |||||||||||||| | || ||||| |||||||| |||||||||          ||||||||||||| ||||||||| ||||||||||     
T  43922150 ctacatacatgttaatttatttatata-tggtctaacatgaaaataaaaatacatatccaaacatctaacttgagcaagttatttcattagaaaaagttc 43922052  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattg 364  Q
    |||||||||| |||  || |||| |  |||||||||||||||| ||||||||||||||||||||||||||||||   ||||||| || | | ||  ||||    
T  43922051 taaaacaagacatcgtagtatttgatctttatttattcatctaatatcaaaaaagctaaaaatgttataatcaattgtaatgtcaattaac-cctgattg 43921953  T
Q  365 atcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagata 441  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| ||||||| || |||||    
T  43921952 atcaacatttctcaaaacatatgtaactcttgtatctactgtatgtggaagcaagagagaaaaaaatgctttagata 43921876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 124 - 441
Target Start/End: Complemental strand, 21409118 - 21408784
Alignment:
Q  124 acacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaa 223  Q
    |||| ||||| | |||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||| || | ||||||||||||||||||    
T  21409118 acacagacacattgacaccgttaatgtaaaaaatataggatactgacaccgctacatatatgttaatttatttatatacgg-tctaaaatgaaaatcaaa 21409020  T
Q  224 ataca----------tctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatca 313  Q
    |||||          ||||| |||||||| ||||||||| ||||||| || ||||| ||||||||  || |||| || |||||||||||||||| ||| |    
T  21409019 atacaaatataagaatctaatttgagcaagttatttcattagaaaaaattctaaaataagatatcgtagtatttgacctttatttattcatctactataa 21408920  T
Q  314 aaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacata--------tgtaactcttgtatctaagg 405  Q
    |||| | ||||||||||||||||||   |||||| | | ||| || ||||||||||||||||||||||||||        |||||||||||||||||||     
T  21408919 aaaaggttaaaaatgttataatcaattgtaatgtttgttaccccctaattgatcaacatttctcaaaacatatgtacatatgtaactcttgtatctaagt 21408820  T
Q  406 aatgtggaagcaagagagacaaaaatgtttcagata 441  Q
     |||||||||||||||||| |||||||||| |||||    
T  21408819 tatgtggaagcaagagagaaaaaaatgttttagata 21408784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 117 - 441
Target Start/End: Original strand, 26565208 - 26565530
Alignment:
Q  117 gacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||| ||||||||||||||||||||| || ||||||||||| ||||||| ||||||| || |||||| |||||||||||||| | || |||||||||||    
T  26565208 gacactgacacggacacttcgacaccgctaatgtaaaaaatacaggacactgacaccgttacatatatgttaatttatttatata-tggtctaaaatgaa 26565306  T
Q  217 aatcaaaatacatcta-acttgagcaaattatttcatcagaaaa-agttataaaacaagatatcacagcatttaacatttatttattcatctattatcaa 314  Q
    ||||||||||||| || ||  || | ||  | |  |   ||||| |  ||||||||||||||||  || |||| |  |||||||  |||| ||   ||||    
T  26565307 aatcaaaatacatatatac--gatctaa--aatgaaaatgaaaatacatataaaacaagatatcgtagtatttgatctttattttctcatttaccgtcaa 26565402  T
Q  315 aaaag-ctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgga 413  Q
    ||||| |||||||||||||||| |||  |||||||||| ||  || || |||||||||||||| |||||||||||||||||| ||||||||  |||||||    
T  26565403 aaaaggctaaaaatgttataattaactgtaatgtctattactccctaaatgatcaacatttctaaaaacatatgtaactcttatatctaagatatgtgga 26565502  T
Q  414 agcaagagagacaaaaatgtttcagata 441  Q
    ||||||||||| |||||||||| |||||    
T  26565503 agcaagagagaaaaaaatgttttagata 26565530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 99 - 439
Target Start/End: Complemental strand, 17716127 - 17715776
Alignment:
Q  99 gacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    ||||||||||| |||||||| |||||||||||||  ||||||||| || |||||| |||||||||||| |||||||||| ||||||| |||||||||||     
T  17716127 gacacctgacacgacactgatacggacacggacatgtcgacaccgctaatgtaaataatataggacactgacaccgctacatatatactaatttatttag 17716028  T
Q  199 agactgatctaaaatgaaaatcaaaatacat--------ctaacttga---gcaaattatttcatcagaaaaagttataaaacaagatatcacagcattt 287  Q
    |   | |||||||||| ||||||||||||||          ||||| |   |||| |||||| ||   |||| ||| ||||||||||||  | |  ||||    
T  17716027 a---taatctaaaatgcaaatcaaaatacatacataataagaacttaacttgcaatttatttaattgaaaaaggttctaaaacaagatacgataaaattt 17715931  T
Q  288 aacatttatttattcatctattat-caaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatat 386  Q
     || ||||||||||||||||||||  |||||||| |||||  || |||||||| ||||| ||||||||| |  |||||||  |||||| |||| ||||||    
T  17715930 gacctttatttattcatctattataaaaaaaagccaaaaacattgtaatcaactttaatttctataaccccataattgatacacatttatcaacacatat 17715831  T
Q  387 gtaactcttgtatctaaggaatgtggaagcaagagag--acaaaaatgtttcaga 439  Q
    |||||||||||||| | | | ||||||| ||||||||  | ||||||||||||||    
T  17715830 gtaactcttgtatcgacgaagtgtggaaccaagagagaaataaaaatgtttcaga 17715776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 99 - 439
Target Start/End: Complemental strand, 19017356 - 19017005
Alignment:
Q  99 gacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    ||||||||||| |||||||| |||||||||||||  ||||||||| || |||||| |||||||||||| |||||||||| ||||||| |||||||||||     
T  19017356 gacacctgacacgacactgatacggacacggacatgtcgacaccgctaatgtaaataatataggacactgacaccgctacatatatactaatttatttag 19017257  T
Q  199 agactgatctaaaatgaaaatcaaaatacat--------ctaacttga---gcaaattatttcatcagaaaaagttataaaacaagatatcacagcattt 287  Q
    |   | |||||||||| ||||||||||||||          ||||| |   |||| |||||| ||   |||| ||| ||||||||||||  | |  ||||    
T  19017256 a---taatctaaaatgcaaatcaaaatacatacataataagaacttaacttgcaatttatttaattgaaaaaggttctaaaacaagatacgataaaattt 19017160  T
Q  288 aacatttatttattcatctattat-caaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatat 386  Q
     || ||||||||||||||||||||  |||||||| |||||  || |||||||| ||||| ||||||||| |  |||||||  |||||| |||| ||||||    
T  19017159 gacctttatttattcatctattataaaaaaaagccaaaaacattgtaatcaactttaatttctataaccccataattgatacacatttatcaacacatat 19017060  T
Q  387 gtaactcttgtatctaaggaatgtggaagcaagagag--acaaaaatgtttcaga 439  Q
    |||||||||||||| | | | ||||||| ||||||||  | ||||||||||||||    
T  19017059 gtaactcttgtatcgacgaagtgtggaaccaagagagaaataaaaatgtttcaga 19017005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 435
Target Start/End: Original strand, 14218479 - 14218623
Alignment:
Q  292 tttatttattcatctattatcaaaaaag-ctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaa 390  Q
    |||||||||| ||||| ||| ||||||  ||||||||||||||||||||  |||||||||| ||| || ||||||||||||||| |||||| |||||| |    
T  14218479 tttatttatttatctactataaaaaaaaactaaaaatgttataatcaactgtaatgtctattaccccctaattgatcaacatttatcaaaatatatgtga 14218578  T
Q  391 ctcttgtatctaaggaatgtggaagcaagagagacaaaaatgttt 435  Q
    ||||||| |||| || |||||||||||||||||| ||||||||||    
T  14218579 ctcttgtgtctacggtatgtggaagcaagagagaaaaaaatgttt 14218623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 231 - 429
Target Start/End: Complemental strand, 10516308 - 10516110
Alignment:
Q  231 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 330  Q
    |||||||||||| ||||||||| |||||||||| ||||| ||||||||  || |||| ||  ||||||||||| ||  ||||||||| | ||||||||||    
T  10516308 taacttgagcaagttatttcattagaaaaagttctaaaataagatatcgtagtatttgaccattatttattcaactcctatcaaaaaggttaaaaatgtt 10516209  T
Q  331 ataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaa 429  Q
    ||||| | |  |||||| ||| ||| || ||||||| ||||||| | ||||||||||||||||||||||||| || |  |||||| |||||||| ||||    
T  10516208 ataataagctataatgtatattaccccctaattgattaacattttttaaaacatatgtaactcttgtatctacggtacatggaagtaagagagaaaaaa 10516110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 148 - 402
Target Start/End: Original strand, 27063668 - 27063931
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttg 237  Q
    ||||||||||||||| ||   |||||| || |||||||||||||||||||||||| | |||||||||| |||||||| ||||          ||||||||    
T  27063668 tgtaaaaaatatagggcataaacaccggtacatatatattaatttatttatagacgg-tctaaaatgataatcaaaacacatatttaagcatctaacttg 27063766  T
Q  238 agcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatca 337  Q
    ||||  ||||||| | | |||| ||| |||||||||||| || |  || | || |||||||||||||||| | ||| |||||||||||||||| |||| |    
T  27063767 agcagtttatttctttaaaaaacgttctaaaacaagataccataatatatgacctttatttattcatctactgtcataaaagctaaaaatgttgtaatta 27063866  T
Q  338 acgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 402  Q
    || | ||| ||||||||  |  |||||||||||||||||||| | ||||||||||||| ||||||    
T  27063867 acttaaatttctataactcctaaattgatcaacatttctcaacatatatgtaactcttatatcta 27063931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 27111261 - 27111150
Alignment:
Q  118 acacggacacggacacttcgacaccgttagtgt-aaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||||||||  | |||| ||||||| |||||| |||||||||||||||||||||||  || |||||| |||||||||||||| || | |||||||||||    
T  27111261 acacggacacatatactttgacaccgctagtgttaaaaaatataggacaccgacaccattacatatatgttaatttatttataaac-ggtctaaaatgaa 27111163  T
Q  217 aatcaaaatacat 229  Q
    |||||||||||||    
T  27111162 aatcaaaatacat 27111150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 430
Target Start/End: Complemental strand, 10657580 - 10657382
Alignment:
Q  231 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 330  Q
    |||||| || || |||||| || |||||||||| ||||||||||||||  |  |||| || |||||||||||| ||  | ||||||||| ||||||||||    
T  10657580 taacttaagtaagttattttattagaaaaagttctaaaacaagatatcgtataatttgacctttatttattcaactcct-tcaaaaaagttaaaaatgtt 10657482  T
Q  331 ataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    |||||||    |||||| | | | |  | ||||||||||||||| ||||||||||||||| ||||||||||| || |  |||||| |||||||| |||||    
T  10657481 ataatcatatgtaatgtattttagcctctaattgatcaacatttttcaaaacatatgtaaatcttgtatctacggtacatggaagtaagagagaaaaaaa 10657382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 423
Target Start/End: Original strand, 49861099 - 49861181
Alignment:
Q  341 ttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag 423  Q
    ||||||||||| ||| || ||||||||||||| ||||||||| ||||||||||||||||||| ||  ||| ||||||||||||    
T  49861099 ttaatgtctatgaccccctaattgatcaacatatctcaaaacttatgtaactcttgtatctacggtgtgtagaagcaagagag 49861181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 14218362 - 14218463
Alignment:
Q  129 gacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaa--tatatattaatttatttatagactgatctaaaatgaaaatcaaaata 226  Q
    ||||||||| ||| |||||||||||| ||||||||| | ||||| |||| |  ||||| |||||||||||||| |  |||||||||||||||||||||||    
T  14218362 gacacttcggcactgttagtgtaaaagatataggactctgacactgctacatgtatatgttaatttatttatata-agatctaaaatgaaaatcaaaata 14218460  T
Q  227 cat 229  Q
    |||    
T  14218461 cat 14218463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 27109730 - 27109669
Alignment:
Q  376 tcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttca 437  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||||| ||||||||||||    
T  27109730 tcaaaacatatgtaactcttgtatttacggtgtgtggaagcaagagagaaaaaaatgtttca 27109669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 49860462 - 49860545
Alignment:
Q  256 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaac 339  Q
    |||||||| |||||||||||||    | |||| ||||||||||||| ||||| |||||||| |||||||||| |||||||||||    
T  49860462 aaaaagttctaaaacaagatatagtggtatttgacatttatttatttatctactatcaaaagagctaaaaatcttataatcaac 49860545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 430
Target Start/End: Complemental strand, 27109366 - 27109278
Alignment:
Q  342 taatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    ||||||||| ||||  | ||||||||||||| || ||||||||||||||| ||||||| || ||  ||| ||||||||||||| |||||    
T  27109366 taatgtctacaacccactaattgatcaacatatcacaaaacatatgtaacccttgtatttacggtgtgtagaagcaagagagaaaaaaa 27109278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 49860395 - 49860444
Alignment:
Q  179 atatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 229  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||    
T  49860395 atatattttcatttatttataga-tgatctaaaatgaaaatcaaaatacat 49860444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 29697032 - 29697095
Alignment:
Q  292 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacc 355  Q
    ||||||||| |||||  ||||  ||||||||||||||||| ||||||  |||||||||||||||    
T  29697032 tttatttatacatctgctatcgtaaaagctaaaaatgttagaatcaattttaatgtctataacc 29697095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 2227340 - 2227278
Alignment:
Q  254 agaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaa 316  Q
    |||||||||| || |||||||| ||| || |||| || |||||||||||||||| ||||||||    
T  2227340 agaaaaagttctacaacaagatgtcatagtatttgacctttatttattcatctactatcaaaa 2227278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 26565192 - 26565224
Alignment:
Q  95 catggacacctgacatgacactgacacggacac 127  Q
    ||||||||||||||| |||||||||||||||||    
T  26565192 catggacacctgacacgacactgacacggacac 26565224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 6e-75; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 130 - 441
Target Start/End: Complemental strand, 37339014 - 37338697
Alignment:
Q  130 acacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 229  Q
    |||||| ||||||| ||| ||||||| || ||||||||| ||||| || |||||| ||||||||||||||||| | |||||| |||||||||||||||||    
T  37339014 acactttgacaccgctagggtaaaaa-tacaggacaccggcaccgttacatatatgttaatttatttatagacag-tctaaattgaaaatcaaaatacat 37338917  T
Q  230 ----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaag 319  Q
              ||||||||||||||||||||||| |||||| ||||| ||||||||||||| || |||| || |||||||||||||||| |||||||||||    
T  37338916 atataagcatctaacttgagcaaattatttcattagaaaatgttatcaaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaag 37338817  T
Q  320 ctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaag 419  Q
     |||||||||||| |||||| ||||||| || || | || ||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||    
T  37338816 ttaaaaatgttattatcaactttaatgtttaaaatc-cctaattgatcaacatttctcaaagcatatgtaactcttgtatctacggtatgtggaagcaag 37338718  T
Q  420 agagacaaaaatgtttcagata 441  Q
    ||||| ||||||||||||||||    
T  37338717 agaga-aaaaatgtttcagata 37338697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 74 - 441
Target Start/End: Original strand, 27616185 - 27616544
Alignment:
Q  74 gctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacacc 173  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||| |      |||||||||||| ||||||||||| ||||||||||||||    
T  27616185 gctatgaagcatggactccgacacgtacacctgacacgatactgacacggacatg------tcgacaccgttaatgtaaaaaatacaggacaccgacacc 27616278  T
Q  174 gctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatac----------atctaacttgagcaaattatttcatcagaaaaagtt 263  Q
    |||| || ||| |||||||||||||||  || |||||||||||||||||| |||          |||| |||||||||  |||||| || |||| |||||    
T  27616279 gctacatgtatgttaatttatttatagg-tggtctaaaatgaaaatcaaagtacgtacataagcatcttacttgagcagtttatttaattagaacaagtt 27616377  T
Q  264 ataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaatt 363  Q
     ||||||||||||||| || |||| || ||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||    
T  27616378 ctaaaacaagatatcatagtatttgacttttatttatacatctactatcagaaaagctaaaaatgttataatcaactttaatgtctataaccccctaatt 27616477  T
Q  364 gatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagata 441  Q
    || || ||||||||           |||||||||||||| |   ||||||||||||||||| ||||||||||||||||    
T  27616478 gaccatcatttctc-----------aactcttgtatctacgacgtgtggaagcaagagagaaaaaaatgtttcagata 27616544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 117 - 441
Target Start/End: Original strand, 46532751 - 46533084
Alignment:
Q  117 gacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||| ||||||||||||| || |||| || | |||||||||||| |||| ||||| |||| |||||| |||||||||||||||  || | ||| || ||    
T  46532751 gacactgacacggacactttgataccgctaatttaaaaaatatagaacactgacactgctacatatatgttaatttatttatagg-tggtttaagataaa 46532849  T
Q  217 aatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatct 306  Q
    ||| |||||||||          |||||||||| || |||||||||  ||||||||| ||||| |||||| |  || |||| ||  || |||||||| ||    
T  46532850 aattaaaatacatatataagcatctaacttgaggaagttatttcatttgaaaaagttctaaaataagataacgtagtatttgaccattgtttattcacct 46532949  T
Q  307 attatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaagga 406  Q
      | ||||||||||||||||||||||||||||   |||||| ||||||| || |||||||||||||| ||||||| ||||||| |||||||||||| |      
T  46532950 gctgtcaaaaaagctaaaaatgttataatcaattgtaatgtttataacc-cctaattgatcaacattcctcaaaatatatgtagctcttgtatctatgat 46533048  T
Q  407 atgtggaagcaagagagacaaaaa-tgtttcagata 441  Q
     |||| |||||||||||| ||||| |||||||||||    
T  46533049 ttgtgtaagcaagagagaaaaaaactgtttcagata 46533084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 44572714 - 44572571
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||||||| |||      ||||||||||    ||||||||||||||| ||||||||||    
T  44572714 ctatgaagcatggactccgacacggactcctgacacgacactgacacggatacg------tcgacaccgt----gtaaaaaatataggaaaccgacaccg 44572625  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 229  Q
    ||| |||||| |||||||||||| ||  || ||||||||||||||||||||||||    
T  44572624 ctacatatatgttaatttatttaaag-ttggtctaaaatgaaaatcaaaatacat 44572571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 130 - 219
Target Start/End: Original strand, 10678250 - 10678338
Alignment:
Q  130 acacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaat 219  Q
    |||||||||||||  |||| |||||||||||||||||||||| || || ||||||||||||||||||||| | || ||||||||||||||    
T  10678250 acacttcgacaccactagtttaaaaaatataggacaccgacatcgttagatatatattaatttatttatata-tggtctaaaatgaaaat 10678338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 167 - 399
Target Start/End: Complemental strand, 32716728 - 32716489
Alignment:
Q  167 cgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatac----------atctaacttgagcaaattatttcatcaga 256  Q
    |||||| |||| ||||||||||||| ||||||||| || ||||||||||||||||||||||          |||||||||||  || || ||| || | |    
T  32716728 cgacactgctacatatatattaattaatttatagattg-tctaaaatgaaaatcaaaatacatatatgtatatctaacttgaataatttgttttattaaa 32716630  T
Q  257 aaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacct 356  Q
    ||||||| ||||||||||||  | || |||| |  |||||||||||||| | |||| |||||| |||||||| |  ||||||  |||||||||||||  |    
T  32716629 aaaagttctaaaacaagatacaatagtatttgatctttatttattcatccactatcgaaaaagttaaaaatggtgcaatcaattttaatgtctataa--t 32716532  T
Q  357 cccaattgatcaacatttctcaaaacatatgtaactcttgtat 399  Q
    |||   | ||||| ||||||||| | |||||||||||||||||    
T  32716531 ccctcattatcaaaatttctcaatatatatgtaactcttgtat 32716489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 360 - 435
Target Start/End: Original strand, 10678441 - 10678516
Alignment:
Q  360 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgttt 435  Q
    |||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||| | | ||||||||    
T  10678441 aattgatcaatatttctcaaaacatacgtaactcttgtatctacggtatgtggaagcaagagaaaaagaaatgttt 10678516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 337
Target Start/End: Complemental strand, 45216106 - 45215999
Alignment:
Q  230 ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgt 329  Q
    ||||||||||||| |||| |||| |||||||||| || || ||||| ||| |  |||| || |||||||||||||||| | ||||||||||||||||||     
T  45216106 ctaacttgagcaatttatgtcattagaaaaagttctacaataagatgtcatattatttgacctttatttattcatctactgtcaaaaaagctaaaaatga 45216007  T
Q  330 tataatca 337  Q
    ||||||||    
T  45216006 tataatca 45215999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 339
Target Start/End: Original strand, 22290882 - 22290990
Alignment:
Q  231 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 330  Q
    |||||| | ||| ||||||||| | |||||||| || ||||||||||||  | |||| || |||||||||| ||||| |||||||||||||||||||  |    
T  22290882 taacttaaacaatttatttcattaaaaaaagttctacaacaagatatcattgtatttgacctttatttattaatctactatcaaaaaagctaaaaattat 22290981  T
Q  331 ataatcaac 339  Q
    |||||||||    
T  22290982 ataatcaac 22290990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 45216214 - 45216112
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||      ||||||||| || ||||||||||||| ||||| |||||||    
T  45216214 ctatgaagcatggactc--acacggacacctgacacgacactgacacggacacg------tcgacaccgctaatgtaaaaaatataagacacggacaccg 45216123  T
Q  175 ctaaatatata 185  Q
     || |||||||    
T  45216122 ttacatatata 45216112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 384
Target Start/End: Original strand, 6439784 - 6439915
Alignment:
Q  256 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaac----gttaatgtctat 351  Q
    |||||||||||| ||||||||  | || |||| |||| |||||||||| ||| |||| |||||| |||||||||| ||||||||     |||||||||||    
T  6439784 aaaaagttataacacaagatacgatagtatttgacatctatttattcaactactatcgaaaaagataaaaatgttgtaatcaactttaattaatgtctat 6439883  T
Q  352 aacctcccaattgatcaacatttctcaaaacat 384  Q
    || ||||  | ||||||||||||||||| ||||    
T  6439884 aa-ctcctcaatgatcaacatttctcaacacat 6439915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 11812759 - 11812685
Alignment:
Q  124 acacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    |||| ||||| | ||||||| || ||||||||| ||||||||||||||| ||||  |||||||||||||||||||    
T  11812759 acacagacacgttgacaccgctaatgtaaaaaacataggacaccgacacagctacctatatattaatttatttat 11812685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 349 - 435
Target Start/End: Complemental strand, 44182474 - 44182388
Alignment:
Q  349 tataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgttt 435  Q
    |||||||||| ||||||| ||| |||||||| | |||| ||| ||||||||||| ||  ||||||| ||||||||| ||||||||||    
T  44182474 tataacctcctaattgattaacttttctcaacatatatctaattcttgtatctacggtgtgtggaaccaagagagagaaaaatgttt 44182388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 338
Target Start/End: Complemental strand, 44572547 - 44572501
Alignment:
Q  292 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaa 338  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  44572547 tttatttattcatctactatcaaaaaagctaaaaatgatataatcaa 44572501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 5741578 - 5741658
Alignment:
Q  118 acacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    |||||||||| ||||| || |||| |||| |||||||||  ||| ||||||||||||||| | ||||||||||| ||||||    
T  5741578 acacggacactgacacatcaacactgttaatgtaaaaaacttagaacaccgacaccgctacacatatattaattaatttat 5741658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 8799619 - 8799671
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacac 127  Q
    |||||| ||||||||||||||| |||||||||||| |||||| ||||||||||    
T  8799619 ctatgacgcatggactccgacacggacacctgacacgacacttacacggacac 8799671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 9730141 - 9730090
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttata 199  Q
    |||||||||||||| |||| ||||||||||  ||||||||||||||||||||    
T  9730141 tgtaaaaaatatagaacactgacaccgctacctatatattaatttatttata 9730090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 11815761 - 11815688
Alignment:
Q  124 acacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttattta 197  Q
    |||| ||||| | ||||||| || ||||||||||||||||||| ||||| ||||  ||| ||||||||||||||    
T  11815761 acacagacaccttgacaccgctaatgtaaaaaatataggacactgacactgctatctatttattaatttattta 11815688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 44182831 - 44182753
Alignment:
Q  149 gtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 229  Q
    |||||||||||||| |||  || | |||| | |||||| ||||||||||||||| |||||||||| |||||||||||||||    
T  44182831 gtaaaaaatataggccactaacgctgctacacatatat-aatttatttatagac-gatctaaaataaaaatcaaaatacat 44182753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 11820752 - 11820705
Alignment:
Q  151 aaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    |||||| |||||||||||||||| |||  |||||||||||||||||||    
T  11820752 aaaaaacataggacaccgacaccactacctatatattaatttatttat 11820705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 11814636 - 11814575
Alignment:
Q  137 gacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    |||||||||| ||||||||| ||||||||||||||| | ||  |||||||||| | ||||||    
T  11814636 gacaccgttaatgtaaaaaacataggacaccgacactgttacctatatattaagtgatttat 11814575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 43837292 - 43837239
Alignment:
Q  284 atttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatca 337  Q
    |||||||||||||||||  |||||||||| ||||| |||| |||||| ||||||    
T  43837292 atttaacatttatttatcaatctattatcgaaaaaactaataatgttgtaatca 43837239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 11817075 - 11817027
Alignment:
Q  150 taaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    ||||||||| |||||||||||  |||||  |||||||||||||||||||    
T  11817075 taaaaaataaaggacaccgacgtcgctacctatatattaatttatttat 11817027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 43837485 - 43837405
Alignment:
Q  118 acacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    |||| ||||||||||| ||||||| | || |||||||||   ||||||  |||||| ||| | ||||||||||||||||||    
T  43837485 acactgacacggacacctcgacactgctaatgtaaaaaactcaggacattgacaccactacacatatattaatttatttat 43837405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 74 - 430
Target Start/End: Complemental strand, 32676930 - 32676579
Alignment:
Q  74 gctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacacc 173  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||            ||||||||| || ||||||||| ||||||||||||| |     
T  32676930 gctatgaagcatggactccgacacggacacctgacacgacactgacacg------------tcgacaccgctaatgtaaaaaaaataggacaccgaccct 32676843  T
Q  174 gctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagtt 263  Q
    |||| |||||| ||||||||||| ||||| | ||||||||||||||||||||||||          |||| |||||||| ||||||||| ||||||||||    
T  32676842 gctacatatatgttaatttatttttagacgg-tctaaaatgaaaatcaaaatacatacataagcatctaa-ttgagcaatttatttcattagaaaaagtt 32676745  T
Q  264 ataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaatt 363  Q
    |||||||||||||||| |  |||| |  || ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| || || ||||    
T  32676744 ataaaacaagatatcatattatttgatctt-atttattcatctactatcaaaaaagttaaaaatgttataatcaactttaatgtctatatccccctaatt 32676646  T
Q  364 gatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    || ||||||||||||||||||||||||||||||||| ||     ||||||||||||||||| |||||    
T  32676645 gaacaacatttctcaaaacatatgtaactcttgtatttacaatgtgtggaagcaagagagaaaaaaa 32676579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 75 - 277
Target Start/End: Original strand, 40837667 - 40837872
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||| ||||||||||||| |||||||||||| || | |||||      ||||||||| || |||| |||||||||||||||| ||||| |||||||    
T  40837667 ctatgaagtatggactccgacacggacacctgacacgataatgaca------cggacactttgataccgctagtgtaaaaaatataagacactgacaccg 40837760  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaata----------catctaacttgagcaaattatttcatcagaaaaagtta 264  Q
    ||| |||||| |||||||||||||| || | |||||||||||||||||||||          |||||||||||||||||||||||||| ||||||||||     
T  40837761 ctagatatatgttaatttatttatatac-ggtctaaaatgaaaatcaaaatacatatataagcatctaacttgagcaaattatttcattagaaaaagttc 40837859  T
Q  265 taaaacaagatat 277  Q
    |||||||||||||    
T  40837860 taaaacaagatat 40837872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 38989491 - 38989237
Alignment:
Q  135 tcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaata----catc 230  Q
    |||||| || || ||||||||||||||||||| |||| || || |||||| ||||||| || | |||| | |||||||| |||||  | |||    ||||    
T  38989491 tcgacatcgctaatgtaaaaaatataggacactgacaacgttacatatattttaattttttcaaagacgg-tctaaaattaaaatacatatatcaacatc 38989393  T
Q  231 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 330  Q
    |||||||||||| |||| |||| |||||||||| || |||||||||||| || |||| || |||||||||||||||| |||||||| |  |||||||| |    
T  38989392 taacttgagcaatttatgtcattagaaaaagttctacaacaagatatcatagtatttgacttttatttattcatctactatcaaaagatttaaaaatgat 38989293  T
Q  331 ataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgta 389  Q
    ||||||||   |||||||||||||| || ||||||||||||||| || |||||||||||    
T  38989292 ataatcaa--ataatgtctataacc-cctaattgatcaacatttatcgaaacatatgta 38989237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 292 - 435
Target Start/End: Original strand, 40837984 - 40838125
Alignment:
Q  292 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaac 391  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||  |||||| ||| ||| || ||||||||||||||||||||||||||||||||    
T  40837984 tttatttattcatctactatcaaaaa-gctaaaaatgttataataaactataatgtttattacc-cctaattgatcaacatttctcaaaacatatgtaac 40838081  T
Q  392 tcttgtatctaaggaatgtggaagcaagagagacaaaaatgttt 435  Q
    ||||||||||| || || ||||||||||||  | ||||||||||    
T  40838082 tcttgtatctacggtatctggaagcaagaggaaaaaaaatgttt 40838125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 123 - 199
Target Start/End: Complemental strand, 41815870 - 41815795
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttata 199  Q
    |||||||||| || ||||||| || ||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  41815870 gacacggacaattagacaccgctaatgtaaaaaa-ataggacaccgacaccgctacatatatattaatttatttata 41815795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 10613127 - 10613232
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    ||||||||||| ||||||| | |  || |||||||||||||||| ||||||| || |||||| |||||||||||| ||||  ||||||||||||||  ||    
T  10613127 gacacggacacgtcgacactgcttatgaaaaaaatataggacactgacaccgttacatatatgttaatttatttaaagac-aatctaaaatgaaaactaa 10613225  T
Q  223 aatacat 229  Q
    |||||||    
T  10613226 aatacat 10613232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 39732321 - 39732276
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgaca 120  Q
    |||||||||||||||||||||| | |||||||||| ||||||||||    
T  39732321 ctatgaagcatggactccgacacgaacacctgacacgacactgaca 39732276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 77 - 429
Target Start/End: Original strand, 12843766 - 12844120
Alignment:
Q  77 atgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgct 176  Q
    |||||||||||||||||||| |||||| ||||| |||||||||||  |||||      ||||||| | || | ||| |||||||||||||  |||| |||    
T  12843766 atgaagcatggactccgacacggacacttgacacgacactgacacaaacacg------tcgacactgctaatataacaaatataggacactaacactgct 12843859  T
Q  177 aaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagttata 266  Q
    | |||||| |||||||||||| |||| | |||||||||||||| |||||||||          |||||||||||||  |||||||| |||| ||||| ||    
T  12843860 acatatatgttaatttatttaaagacgg-tctaaaatgaaaatgaaaatacatatataaacatctaacttgagcaatatatttcattagaacaagttcta 12843958  T
Q  267 aaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgat 366  Q
     || ||||||||| || |||| || |||||||||||||||| |||||||||||||||||||| ||||||||||  |||||| ||||||| || |||||||    
T  12843959 caataagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtgtataacc-cctaattgat 12844057  T
Q  367 caacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaa 429  Q
    |||||||||||||||||||||||||||||||||||| ||   |||||||||||||||| ||||    
T  12844058 caacatttctcaaaacatatgtaactcttgtatctatggtgcgtggaagcaagagagaaaaaa 12844120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 123 - 424
Target Start/End: Complemental strand, 1255924 - 1255611
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaa---atatatattaatttatttatagactgatctaaaatgaaaat 219  Q
    ||||| || |||||||||| ||||||||||||||||| |||||||||||||||||    |||||| ||||||||||| ||||| | ||||||||||||||    
T  1255924 gacacagatacttcgacactgttagtgtaaaaaatatgggacaccgacaccgctactacatatatgttaatttatttgtagacgg-tctaaaatgaaaat 1255826  T
Q  220 caaaatacatcta----------acttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctatt 309  Q
    |||||||||| ||          |||||||||| |||||| || |||||||||| ||||||||||||||  || |||| ||||||||||||  ||||  |    
T  1255825 caaaatacatatataagcatttaacttgagcaagttattttattagaaaaagttctaaaacaagatatcgtagtatttgacatttatttatgtatctgct 1255726  T
Q  310 atcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatg 409  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| || |||||||||||||| |||||||| |||||| ||||||||||||     ||    
T  1255725 atcaaaaaagctaaaaatgttataatcaactgtaatgtctataaccccctaattgatcaacattcctcaaaacctatgtagctcttgtatctattatttg 1255626  T
Q  410 tggaagcaagagaga 424  Q
    |||||||||||||||    
T  1255625 tggaagcaagagaga 1255611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 123 - 424
Target Start/End: Complemental strand, 14494698 - 14494389
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    ||||||||||| ||||||||| || ||||||| ||| |||||||||||||||||| |||||| |||||||||||| |||| | |||||||||||||| ||    
T  14494698 gacacggacacgtcgacaccgctaatgtaaaatatacaggacaccgacaccgctacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaa 14494600  T
Q  223 aatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatc 312  Q
    |||||||          ||| ||| ||||| ||||||||| |||||||||| || ||||| |||||| || |||| || ||||||||||| |||||||||    
T  14494599 aatacatatataaacatctatctttagcaatttatttcattagaaaaagttctacaacaaaatatcatagtatttgacctttatttattcgtctattatc 14494500  T
Q  313 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgg 412  Q
    ||||||| |||||||| ||||||||||  | |||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||| ||  |||||    
T  14494499 aaaaaagttaaaaatgatataatcaactatgatgtctataacc-cctaattgatcaacatttctcaaaacatatgtaattcttgtatctatggtgtgtgg 14494401  T
Q  413 aagcaagagaga 424  Q
    || ||| |||||    
T  14494400 aaacaatagaga 14494389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 123 - 431
Target Start/End: Original strand, 17539920 - 17540236
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    ||||||||||  |||||||||||| ||||||||||||| ||||||||||||  || |||||| |||||||||||| |||| | |||||||||||||| ||    
T  17539920 gacacggacatgtcgacaccgttaatgtaaaaaatataagacaccgacaccattacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaa 17540018  T
Q  223 aatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatc 312  Q
    |||||||          |||||||| |||| ||||  ||| |||||||||| |  || ||||||||| || |||| || |||||||||| ||||| ||||    
T  17540019 aatacatatataaacatctaacttgggcaatttatgacattagaaaaagttctgcaataagatatcatagtatttgacctttatttatttatctactatc 17540118  T
Q  313 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgg 412  Q
    |||||||||||||||| ||||||||||  |||  | ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||  || ||    
T  17540119 aaaaaagctaaaaatgatataatcaactataacttttataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcgg 17540217  T
Q  413 aagcaagagagacaaaaat 431  Q
    |||||||||||| ||||||    
T  17540218 aagcaagagagaaaaaaat 17540236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 126 - 424
Target Start/End: Original strand, 56914 - 57209
Alignment:
Q  126 acggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat 225  Q
    |||||||| ||||||||| || | |||||||||||||||||  ||||||||| |||||| ||||||||| ||||||| | ||||||  |||||| |||||    
T  56914 acggacacatcgacaccgctaatataaaaaatataggacacgaacaccgctacatatatgttaatttatctatagacgg-tctaaatcgaaaattaaaat 57012  T
Q  226 a----------catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaa 315  Q
    |          |||||||||||||||| ||||||||| |||||| ||| ||| | ||||||| | || |||            ||||||||| |||||||    
T  57013 atattcataagcatctaacttgagcaacttatttcattagaaaatgttctaatataagatataatagtatt------------attcatctactatcaaa 57100  T
Q  316 aaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaag 415  Q
    |||| ||||||||||||||||||| |||||||||||||||  | | |||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  57101 aaaggtaaaaatgttataatcaactttaatgtctataaccctctagttgatcaacatttctccaaacatatgtaactcttgtatctacggtatgtggaag 57200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 75 - 339
Target Start/End: Original strand, 19294244 - 19294511
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    ||||||||||||||||| ||||||||||||||||    ||| ||||| |||||| |||| ||||||||| || |||||||||||||||||||||| ||||    
T  19294244 ctatgaagcatggactctgacatggacacctgacg---cac-gacactgacacgaacacatcgacaccgctaatgtaaaaaatataggacaccgataccg 19294339  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat----------acatctaacttgagcaaattatttcatcagaaaaagtta 264  Q
    ||| |||||| |||||||||||| |||| | ||||||||| |||| |||||          ||||||||||| ||||| ||||||||| ||||||||||     
T  19294340 ctacatatatgttaatttatttaaagac-ggtctaaaatggaaattaaaatacatatataaacatctaacttaagcaatttatttcattagaaaaagtt- 19294437  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagct-aaaaatgttataatcaac 339  Q
       |||||||||||| || |||| || |||||||||||||||| ||| ||||||||| ||||||| ||||||||||    
T  19294438 --caacaagatatcatagtatttgacctttatttattcatctactatgaaaaaagctaaaaaatgatataatcaac 19294511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 148 - 441
Target Start/End: Original strand, 19542065 - 19542368
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat-----------ctaactt 236  Q
    ||||||||| |||||||| ||| || |||| |||||| ||||||||||||||||| | | |||||| |||||||||||||||           |||||||    
T  19542065 tgtaaaaaacataggacatcgatactgctacatatatgttaatttatttatagacgg-tataaaattaaaatcaaaatacatacataaggcatctaactt 19542163  T
Q  237 gagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatc 336  Q
    ||  || | |||||||  |||||| || |||||||| |||||  || ||||  | |||||||||||||||| |||||| || ||||||| ||||||||||    
T  19542164 gaaaaattgatttcattggaaaaaattctaaaacaaaatatcttagtatttgtcctttatttattcatctactatcaagaatgctaaaattgttataatc 19542263  T
Q  337 aacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaagg-aatgtggaagcaagagagacaaaaatgttt 435  Q
    ||| ||||| ||| ||||| |  ||||| |||| ||||||||||||| ||||||||||||||| || ||  |||||||||||||||||| ||||||||||    
T  19542264 aactttaatatctctaacc-cttaattgttcaatatttctcaaaacaaatgtaactcttgtatgtacggttatgtggaagcaagagagaaaaaaatgttt 19542362  T
Q  436 cagata 441  Q
     |||||    
T  19542363 tagata 19542368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 76 - 299
Target Start/End: Complemental strand, 34011451 - 34011225
Alignment:
Q  76 tatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgc 175  Q
    |||||||||||||||  |||| |||||| |||||  |||||||||||||||||      ||||| ||| || |||||||||||||||||||||||||||     
T  34011451 tatgaagcatggactttgacacggacacgtgacacaacactgacacggacacg------tcgacgccgctaatgtaaaaaatataggacaccgacaccgt 34011358  T
Q  176 taaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat----------acatctaacttgagcaaattatttcatcagaaaaagttat 265  Q
    ||  ||||| |||||||||||| |||| | |||||| ||||||| |||||          |||||||||| |||||| |||| |||||| |||||||| |    
T  34011357 tacttatatgttaatttatttaaagaccg-tctaaagtgaaaattaaaatacatatataaacatctaactcgagcaatttatgtcatcataaaaagttct 34011259  T
Q  266 aaaacaagatatcacagcatttaacatttattta 299  Q
    | |||||||||||| || |||| |||||||||||    
T  34011258 acaacaagatatcatagtatttgacatttattta 34011225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 34013440 - 34013625
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||| ||  ||||| |||||||||||| |||| | |||||| ||||||| ||    
T  34013440 gacacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttatttaaagaccg-tctaaagtgaaaattaa 34013538  T
Q  223 aat----------acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttattta 299  Q
    |||          |||||||||| |||||| |||| |||||| |||||||| || |||||||||||| || |||| |||||||||||    
T  34013539 aatacatatataaacatctaactcgagcaatttatgtcatcataaaaagttctacaacaagatatcatagtatttgacatttattta 34013625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 124 - 378
Target Start/End: Original strand, 2601994 - 2602255
Alignment:
Q  124 acacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaa 223  Q
    |||||||||| ||||||| |||| |||||||||  | ||||||||||||| |||  |||||||||||||||||||| |  |||||||| | | |||||||    
T  2601994 acacggacacgtcgacactgttaatgtaaaaaacctcggacaccgacacctctacctatatattaatttatttata-aaagatctaaattaagaatcaaa 2602092  T
Q  224 ata----------catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatca 313  Q
    |||          |||||||||| |||| |||| ||||| |||||||| |||| |||||||||  | || ||||| | ||||||||| ||| || ||||     
T  2602093 atacaaacatatgcatctaactt-agcagattacttcattagaaaaaggtatataacaagatacaatagtatttaccctttatttatccatgtactatcg 2602191  T
Q  314 aaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctca 378  Q
    |||||  ||||  |||| |||||||| ||||||| ||||| | || | |||||||||||||||||    
T  2602192 aaaaatttaaatgtgttgtaatcaactttaatgtttataaac-cctagttgatcaacatttctca 2602255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 229
Target Start/End: Complemental strand, 12790643 - 12790571
Alignment:
Q  156 atataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 229  Q
    |||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||| |||||    
T  12790643 atataggacaccgacaccgctacatatatgttaatttatttatatac-gatctaaaatgaaaatcaaattacat 12790571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 317
Target Start/End: Original strand, 34708843 - 34709034
Alignment:
Q  135 tcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----- 229  Q
    |||| ||||||| ||||| |||||||||||||||||||  |||  ||||| |||||||||||| |||  | |||||||| ||||| |||||||||         
T  34708843 tcgataccgttaatgtaagaaatataggacaccgacacatctacgtatatgttaatttatttaaagatag-tctaaaattaaaattaaaatacatatata 34708941  T
Q  230 -----ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaa 317  Q
         |||||||||| || ||||||||| |||||||||| |  |||||||||||| || |||| || |||||||||||||||| ||| |||||    
T  34708942 aacatctaacttgagaaatttatttcattagaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactataaaaaa 34709034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 429
Target Start/End: Original strand, 34709054 - 34709169
Alignment:
Q  313 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtgg 412  Q
    |||||| || |||||| ||||||||||  |||||| ||||||| || ||||||||||||||| |||||| |||| |||||||| |||||| ||  ||||     
T  34709054 aaaaaaacttaaaatgatataatcaactataatgtatataacc-cctaattgatcaacatttttcaaaatatatataactcttatatctatggcgtgtga 34709152  T
Q  413 aagcaagagagacaaaa 429  Q
    |||||||||||| ||||    
T  34709153 aagcaagagagaaaaaa 34709169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 34011218 - 34011158
Alignment:
Q  360 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaaga 420  Q
    ||||||||| ||||||||||||||| || |||||||||||||| ||  || ||||||||||    
T  34011218 aattgatcaccatttctcaaaacatgtgcaactcttgtatctatggtgtgcggaagcaaga 34011158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 34013632 - 34013692
Alignment:
Q  360 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaaga 420  Q
    ||||||||| ||||||||||||||| || |||||||||||||| ||  || ||||||||||    
T  34013632 aattgatcaccatttctcaaaacatgtgcaactcttgtatctatggtgtgcggaagcaaga 34013692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 75 - 430
Target Start/End: Original strand, 26575930 - 26576279
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||||||||||||||||| ||||||||||||  |||||        ||||||||| ||||||||| || |||||||||||||||||||||  ||      
T  26575930 ctatgaagcatggactccgacacggacacctgacacaacact--------cacggacacgtcgacaccgctaatgtaaaaaatataggacaccgttac-- 26576019  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagtta 264  Q
        |||||| |||||||||||| |||| |||||||||||||||| |||||||||          ||||||||||||| |||| |||| ||||||||||     
T  26576020 ----atatattttaatttatttaaagac-gatctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttc 26576114  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattg 364  Q
    || |||||||||||| || |||| || |||||||||||||||| ||||||| |||||||||| | ||||||||||  ||||||||||||||  | ||| |    
T  26576115 tacaacaagatatcatagtatttgacctttatttattcatctactatcaaataagctaaaaacgatataatcaactataatgtctataacc-actaatcg 26576213  T
Q  365 atcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    |||||||||||||||||||||||||||||||||||||| ||  || |||||||||||||| |||||    
T  26576214 atcaacatttctcaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagagaaaaa 26576279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 75 - 326
Target Start/End: Complemental strand, 32201124 - 32200870
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||||||||||||| ||| | |||||||||| ||||||||||||||||||      ||||||||| || ||||||||||||||||||||||||||     
T  32201124 ctatgaagcatggactccaacacgaacacctgacacgacactgacacggacacg------tcgacaccgctaatgtaaaaaatataggacaccgacacca 32201031  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat----------acatctaacttgagcaaattatttcatcagaaaaagtta 264  Q
     ||||||||| |||||||||||| |||| | |||||||||||||| |||||          ||||||||||||||||| |||| |||| ||||||||||     
T  32201030 ttaaatatatgttaatttatttaaagac-ggtctaaaatgaaaattaaaatacatatataaacatctaacttgagcaatttatgtcattagaaaaagttc 32200932  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 326  Q
    || |||||||||||| || |||| || |||||||||||||||| ||||||||||||||||||    
T  32200931 tacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaagctaaaaa 32200870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 75 - 430
Target Start/End: Original strand, 9929492 - 9929867
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||||||||||| |||||   |||| ||||| ||||||||||||||||||      ||||||||| || |||||||||||||||||||| |||| |    
T  9929492 ctatgaagcatggactacgacacaaacacttgacacgacactgacacggacacg------tcgacaccgctaatgtaaaaaatataggacaccaacactg 9929585  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagtta 264  Q
    ||| |||||| |||||||||||| |||| | |||||||||||||| |||||||||          |||| |||||||| ||||||||| ||||||||||     
T  9929586 ctacatatatgttaatttatttaaagacgg-tctaaaatgaaaattaaaatacatatataaacatctaatttgagcaatttatttcattagaaaaagttc 9929684  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataac---------- 354  Q
    || |||||||||||| || |||| || |||||||||||||||| ||||||||| ||| |||||| ||| ||||||  |||||||||||||              
T  9929685 tacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaatgctcaaaatgatatgatcaactgtaatgtctataacccctgtaatg 9929784  T
Q  355 -------ctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
           | || | ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||| |||||    
T  9929785 tctataacccctatttgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtgtggaagcaagatagaaaaaaa 9929867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 123 - 441
Target Start/End: Complemental strand, 34409842 - 34409514
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaa-tataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaa-tc 220  Q
    ||||||||||| ||||||||| || ||||||||| | |||||||||||||||  || |||||||||||||||||||||||| | || ||||| |||| |     
T  34409842 gacacggacacatcgacaccgctaatgtaaaaaaatctaggacaccgacaccattagatatatattaatttatttatagacgg-tccaaaataaaaaatt 34409744  T
Q  221 aaaatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctatta 310  Q
    |||||||||          ||||||||||||| ||| | ||| |||||||||| || |||||||||| | || |||| || |||||||||| |||||       
T  34409743 aaaatacatatataaacatctaacttgagcaatttagt-cattagaaaaagttctacaacaagatattatagtatttgacctttatttatttatctaccg 34409645  T
Q  311 tca-aaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatg 409  Q
    ||| ||||||||||||||| ||||||||||  |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||  ||    
T  34409644 tcagaaaaagctaaaaatgatataatcaactataatgtctataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatctatggtgtg 34409546  T
Q  410 tggaagcaagagagacaaaaatgtttcagata 441  Q
     |||| ||||||||| |||| ||||| |||||    
T  34409545 cggaatcaagagagagaaaattgttttagata 34409514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 116 - 395
Target Start/End: Complemental strand, 44650224 - 44649945
Alignment:
Q  116 tgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatga 215  Q
    |||||| ||||| ||||  || ||||||||| | ||||||||||||||||  ||||| |||| ||||||||||||||||||||| |  | |||||||||     
T  44650224 tgacactgacacagacatgtcaacaccgttaatataaaaaatataggacattgacactgctacatatatattaatttatttataaatag-tctaaaatgt 44650126  T
Q  216 aaatcaaaatacatctaacttgagcaaattatttcatc-agaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaa 314  Q
    | ||  | |  ||| ||| |||||||| |||||||||  | ||||| ||||||||||||||| || || |||| || |||||||||||||||| ||||||    
T  44650125 acatacataagcatataaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgacctttatttattcatctactatcaa 44650026  T
Q  315 aaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactctt 395  Q
    ||||| |||||||||| |||||||| ||||| ||||||| | || ||||||||||||||| |||| |||||| ||||||||    
T  44650025 aaaagttaaaaatgttgtaatcaactttaatttctataagcccctaattgatcaacatttttcaacacatatataactctt 44649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 137 - 429
Target Start/End: Original strand, 27003952 - 27004255
Alignment:
Q  137 gacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat------- 229  Q
    ||||| |||| ||||||||||||||||||||||||||||||  ||||| |||||||||||| |||| | |||||||||||||  |||||||||           
T  27003952 gacactgttaatgtaaaaaatataggacaccgacaccgctacgtatatgttaatttatttaaagacgg-tctaaaatgaaaactaaaatacatatataaa 27004050  T
Q  230 ---ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatcta---ttatcaaaaaagctaa 323  Q
       |||||||||| || ||||||||| | |||||||| |  |||||||||||| || |||| || ||||||||||||||||   | |  |||||| ||||    
T  27004051 catctaacttgagaaatttatttcattaaaaaaagttctccaacaagatatcatagtatttgacctttatttattcatctactgtaaaaaaaaaaactaa 27004150  T
Q  324 aaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagag 423  Q
    ||||| ||||||||||  ||||||  |||||| || ||||||||||||||| |||||||||||  |||||||||||||| || ||||| |||||| ||||    
T  27004151 aaatgatataatcaactataatgtacataacc-cctaattgatcaacatttttcaaaacatatacaactcttgtatctatggcatgtgaaagcaaaagag 27004249  T
Q  424 acaaaa 429  Q
    | ||||    
T  27004250 aaaaaa 27004255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 41848922 - 41849027
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    ||||| ||||| ||||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||| | | ||||||| ||| ||||||    
T  41848922 gacactgacacatcgacaccgctaatgtaaaaaatataggacaccgacaccgctatctatatattaatttatttataaaat-atctaaattgagaatcaa 41849020  T
Q  223 aatacat 229  Q
    |||||||    
T  41849021 aatacat 41849027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 439
Target Start/End: Complemental strand, 4748224 - 4748015
Alignment:
Q  229 tctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatg 328  Q
    |||||||||||||| |||||||||  ||||||||| ||||||||| ||  | || |||| || |||||||||||||||  |||  || || |||||||||    
T  4748224 tctaacttgagcaatttatttcattggaaaaagttctaaaacaagttacgatagtatttgacctttatttattcatcttctattgaacaaactaaaaatg 4748125  T
Q  329 ttataatcaacgttaatg--tctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagaca 426  Q
     | |||||||| ||||||  ||||||||| ||  | |||||||||||  ||| |||| |||||||||||| ||||| ||  ||||||||||| || || |    
T  4748124 ctgtaatcaactttaatgtctctataacc-cctcagtgatcaacatt--tcacaacacatgtaactcttggatctacggtgtgtggaagcaatagtgaaa 4748028  T
Q  427 aaaatgtttcaga 439  Q
    |||| ||||||||    
T  4748027 aaaaagtttcaga 4748015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 148 - 339
Target Start/End: Original strand, 13037236 - 13037436
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat----------acatctaacttg 237  Q
    ||||||||||||| || ||||||| || || |||||| |||||||||||| |||| |  ||||||||||||| |||||          ||||||||||||    
T  13037236 tgtaaaaaatataagataccgacatcgttacatatatgttaatttatttaaagacagg-ctaaaatgaaaattaaaatgcatatacaaacatctaacttg 13037334  T
Q  238 agcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatca 337  Q
    ||||| |||| ||||  ||||||||| || |||||||||||| || |||| |  |||||||||||||||| ||||||||||  |||||| | |||| |||    
T  13037335 agcaatttatgtcatttgaaaaagttctacaacaagatatcatagtatttgatctttatttattcatctactatcaaaaaaattaaaaacgatatagtca 13037434  T
Q  338 ac 339  Q
    ||    
T  13037435 ac 13037436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 402
Target Start/End: Complemental strand, 15990128 - 15990040
Alignment:
Q  314 aaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 402  Q
    |||| |||||||||||| | || ||| ||||| ||||||||| || ||||| |||||||||||||| ||||||||||||||| ||||||    
T  15990128 aaaacgctaaaaatgttgtgattaactttaatttctataacccccaaattggtcaacatttctcaacacatatgtaactcttatatcta 15990040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 4748318 - 4748255
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatat 186  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  4748318 gacacggacacatcgacaccgctaatgtaaaaaatataggacaccgacactgctatatatatat 4748255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 360 - 431
Target Start/End: Original strand, 13039027 - 13039098
Alignment:
Q  360 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaat 431  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||  || |||||||||||| | ||||||    
T  13039027 aattgatcaacatttctcataacatatgtaactcttgtatctatggtgtgcggaagcaagagataaaaaaat 13039098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 360 - 430
Target Start/End: Complemental strand, 32200856 - 32200786
Alignment:
Q  360 aattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||  || |||||||||||||| |||||    
T  32200856 aattgatcagcatttctcaaaacatatgtaactcttgtatccatggcgtgcggaagcaagagagagaaaaa 32200786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 18724959 - 18724894
Alignment:
Q  135 tcgacaccgttagtgtaaaaaat-ataggacaccgacaccgctaaatatatattaatttatttata 199  Q
    ||||||||| || |||||||||  ||||||||||||||||||||  ||||||||||||||||||||    
T  18724959 tcgacaccgataatgtaaaaaaccataggacaccgacaccgctacctatatattaatttatttata 18724894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 38783910 - 38783859
Alignment:
Q  76 tatgaagcatggactccgacatggacacctgacatgacactgacacggacac 127  Q
    ||||||||||| |||||||||| ||||||||||| || ||||||||||||||    
T  38783910 tatgaagcatgaactccgacatagacacctgacacgatactgacacggacac 38783859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 374
Target Start/End: Original strand, 17651162 - 17651421
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaa 222  Q
    |||||| |||| |||||| || || | ||||||| |||||| || |||||||||   |||||||||||||||||||| |  |||||||| | |||| |||    
T  17651162 gacacgaacacgtcgacatcgctaatataaaaaacataggatactgacaccgctggctatatattaatttatttatata-agatctaaattaaaaaccaa 17651260  T
Q  223 aata----------catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatc 312  Q
    ||||          |||||||||||||||| ||||||||| | || ||||| || |||||| ||  | |  ||||  | ||||||||| |||||| |||     
T  17651261 aatacatacatatgcatctaacttgagcaatttatttcattacaagaagttctataacaagttacaataatatttggcctttatttatccatctactatt 17651360  T
Q  313 aaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacattt 374  Q
     |||||  |||| | ||| |||||||| ||||||||||||||||| |  |||||||||||||    
T  17651361 gaaaaacttaaatacgttgtaatcaactttaatgtctataacctctc-gttgatcaacattt 17651421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 32212335 - 32212377
Alignment:
Q  86 ggactccgacatggacacctgacatgacactgacacggacacg 128  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  32212335 ggactccgacacggacacctgacatgacactgacacgaacacg 32212377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 16661322 - 16661253
Alignment:
Q  228 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatt 297  Q
    ||||||||||||||| |||||| || | |||||||| ||||||||||||  | || ||||||| ||||||    
T  16661322 atctaacttgagcaatttattttattaaaaaaagttctaaaacaagataggatagtatttaacctttatt 16661253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 227 - 430
Target Start/End: Original strand, 17732789 - 17732993
Alignment:
Q  227 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacattt-atttattcatctattatcaaaaaagctaaaa 325  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||  || |||| || ||| ||||||||||||| |||||||||||||||||    
T  17732789 catctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaa 17732888  T
Q  326 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagac 425  Q
    ||||||||||||||  |||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||     
T  17732889 atgttataatcaactgtaatgtctattacctcctaattaatcaacatttctcaaaacacatgtaactcttgtatctacgatatgtggaagcaagagagaa 17732988  T
Q  426 aaaaa 430  Q
    |||||    
T  17732989 aaaaa 17732993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 244 - 441
Target Start/End: Original strand, 31734528 - 31734722
Alignment:
Q  244 ttatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgtta 343  Q
    ||||||||| |||||||||| ||||||||||||||  || ||||  | |||||||||||||||| |||||||| ||||||||||||||||||||||  ||    
T  31734528 ttatttcattagaaaaagttctaaaacaagatatcgtagtattttcc-tttatttattcatctactatcaaaagagctaaaaatgttataatcaactata 31734626  T
Q  344 atgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttcagata 441  Q
    |||||||| |||  |||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||||||||| |||||    
T  31734627 atgtctattacc--ccatgtgatcaacatttctcaaaacatatgtaactcttgtatctacggtatgtggaagcaagagaaagaaaaatgttttagata 31734722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 76 - 430
Target Start/End: Complemental strand, 45612735 - 45612383
Alignment:
Q  76 tatgaagcatggactccga-catggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    ||||||| ||| ||||||| || |||||||||||| |||||||| | |||||||      ||||||||| || |||||||||||||| ||||||||||      
T  45612735 tatgaagtatgtactccgaacacggacacctgacacgacactgatatggacacg------tcgacaccgctaatgtaaaaaatatag-acaccgacacaa 45612643  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatcta----------acttgagcaaattatttcatcagaaaaagtta 264  Q
     || |||||| |||||| ||||| |||||| |||||||||||||| ||||||||| ||          |||||||||| |||| |||| |||||| |||     
T  45612642 ttacatatatgttaattcatttaaagactg-tctaaaatgaaaattaaaatacatatataaacatccaacttgagcaatttatgtcattagaaaatgttc 45612544  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattg 364  Q
    || |||||||||| |     ||| || |||||||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||| | ||  |||     
T  45612543 tacaacaagatatta-----tttgacctttatttattcatctactatcaaaaaagctaaaaatgatataatcaactataatgtctataaac-ccttatta 45612450  T
Q  365 atcaacatttctc-aaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    ||||||||||||| ||||||||||||||||||||||||| ||  || |||||||||||||| |||||    
T  45612449 atcaacatttctcaaaaacatatgtaactcttgtatctatggtgtgcggaagcaagagagaaaaaaa 45612383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 226 - 441
Target Start/End: Complemental strand, 40289299 - 40289086
Alignment:
Q  226 acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaa 325  Q
    |||| |||||||  ||| ||||||||| |||||||||| || |||||||||||| || |||| || |||||||||||||||| |||||||||| ||||||    
T  40289299 acatttaacttggacaatttatttcattagaaaaagttctacaacaagatatcatagtatttgacctttatttattcatctactatcaaaaaaactaaaa 40289200  T
Q  326 atgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagac 425  Q
    ||    |||||||   ||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||| ||  |||||||||||||||||     
T  40289199 ataacttaatcaattgtaatgtctacaacc-cctaattgattaacatttctcaaaacatatgtaaatcttgtatctatggtgtgtggaagcaagagaga- 40289102  T
Q  426 aaaaatgtttcagata 441  Q
    |||||||||| |||||    
T  40289101 aaaaatgttttagata 40289086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 318
Target Start/End: Original strand, 54305516 - 54305763
Alignment:
Q  74 gctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacacc 173  Q
    ||||||||||||||||||| ||| ||||||||||||  |||||||||      ||||||| |||||| || || |||||||| |||||||||||||||||    
T  54305516 gctatgaagcatggactccaacacggacacctgacacaacactgaca------cggacacgtcgacatcgctaatgtaaaaattataggacaccgacacc 54305609  T
Q  174 gctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaat----------acatctaacttgagcaaattatttcatcagaaaaagtt 263  Q
    |||| |||||| |||||||||||| |||| | | |||||||||||| |||||          |||| |||||||||||| |||||| || ||||||||||    
T  54305610 gctacatatatgttaatttatttaaagac-ggtttaaaatgaaaattaaaatacatatacaaacatttaacttgagcaatttatttaattagaaaaagtt 54305708  T
Q  264 ataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaa 318  Q
     ||  ||||||||||| || |||| || |||||||||||||||| ||| ||||||    
T  54305709 ctacgacaagatatcatagtatttgacctttatttattcatctaatataaaaaaa 54305763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 117 - 296
Target Start/End: Original strand, 55680634 - 55680822
Alignment:
Q  117 gacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||| || |||||||| ||||||||| || ||||||||||||||||||||||||||| ||  ||||| |||||||||||| |||| | |||||| ||||    
T  55680634 gacactgatacggacacgtcgacaccgctaatgtaaaaaatataggacaccgacaccgttacttatatgttaatttatttaaagaccg-tctaaagtgaa 55680732  T
Q  217 aatcaaaat----------acatctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttat 296  Q
    ||| |||||          |||||||||| |||||| || | ||||||||||||||| || |||||||||||| || |||| ||||||||    
T  55680733 aattaaaatacatatataaacatctaactcgagcaatttctgtcatcagaaaaagttctacaacaagatatcatagtatttgacatttat 55680822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 658722 - 658575
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccg 174  Q
    |||||||||| ||||||||||||||||||| |||| |||||||||||||| |||      || |||| | || |||||||||| ||||||||||||| ||    
T  658722 ctatgaagcacggactccgacatggacacccgacacgacactgacacggatacg------tcaacactgctaatgtaaaaaatctaggacaccgacagcg 658629  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat 229  Q
      | ||||||| ||||||||| |||||  | |||||||||||||| |||||||||    
T  658628 acacatatatagtaatttattaataga-gggtctaaaatgaaaataaaaatacat 658575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 402
Target Start/End: Original strand, 3419960 - 3420042
Alignment:
Q  319 gctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 402  Q
    |||||||||  ||||||||||  |||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  3419960 gctaaaaattatataatcaactataatatctataacc-cctaattgatcaacatttctcaaaacatatgtaactcttgtatcta 3420042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 433
Target Start/End: Original strand, 44507704 - 44507909
Alignment:
Q  227 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 326  Q
    ||||||| ||||| || ||||||||| | ||||| || |||||||| |||| |   ||||| || ||||||||| |||||  ||| ||||||| ||||||    
T  44507704 catctaatttgagaaatttatttcattaaaaaaa-ttctaaaacaaaatatgatgacatttgacctttatttatccatcttctataaaaaaagataaaaa 44507802  T
Q  327 tgttataatcaacgttaatgtctataacctcccaattgatc-aacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagac 425  Q
    |||| ||||  || ||||||||||||| | | || |||||| |||||||||||| | |||| |||||| ||| |||| ||  |||||||||||||||||     
T  44507803 tgttgtaattgactttaatgtctataatccctca-ttgatctaacatttctcaacatatatttaactcatgtgtctatggtgtgtggaagcaagagagag 44507901  T
Q  426 aaaaatgt 433  Q
    ||||||||    
T  44507902 aaaaatgt 44507909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 392
Target Start/End: Original strand, 2641164 - 2641321
Alignment:
Q  235 ttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataa 334  Q
    |||||||| |||||||||   |||||||| |||||||| |||  |  | |||| || |||||||||| ||||| ||| |||||||  |||||  || |||    
T  2641164 ttgagcaacttatttcattgaaaaaagttctaaaacaaaatactatggtatttgacctttatttatttatctactataaaaaaagtcaaaaacattgtaa 2641263  T
Q  335 tcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaact 392  Q
    ||||| ||||| ||||||||  |   ||||||||||||||||||| ||||||| ||||    
T  2641264 tcaactttaatttctataactccatgattgatcaacatttctcaacacatatgaaact 2641321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 31734419 - 31734471
Alignment:
Q  75 ctatgaagcatggactccgacatggacacctgacatgacactgacacggacac 127  Q
    ||||||||||||||||||||||||| ||||||||| || || |||||||||||    
T  31734419 ctatgaagcatggactccgacatggccacctgacaggataccgacacggacac 31734471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 24614581 - 24614664
Alignment:
Q  256 aaaaagttataaaacaagatatcacagcatttaacattt-atttattcatctattatcaaaaaagctaaaaatgttataatcaa 338  Q
    ||||||||||||||||| |||| | ||  |||||||||| |||||| |||||| ||||||||||| ||||||| || |||||||    
T  24614581 aaaaagttataaaacaaaatatgatagtttttaacattttatttatccatctactatcaaaaaagttaaaaatattgtaatcaa 24614664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 173
Target Start/End: Complemental strand, 50310301 - 50310251
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacacc 173  Q
    ||||||||||||||||||| | |||||||||||| ||||||| ||||||||    
T  50310301 gacacggacacttcgacactgctagtgtaaaaaacataggacgccgacacc 50310251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 422
Target Start/End: Complemental strand, 658537 - 658430
Alignment:
Q  315 aaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaa 414  Q
    ||||| |||||||||| |||||||| | ||| ||||||| |    ||||| ||||||||| |||  ||||||||||||||||| |||| ||  |||||||    
T  658537 aaaagttaaaaatgttgtaatcaacttaaatttctataaacctttaattgttcaacatttttcagcacatatgtaactcttgtttctacggtgtgtggaa 658438  T
Q  415 gcaagaga 422  Q
     |||||||    
T  658437 ccaagaga 658430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 35529482 - 35529533
Alignment:
Q  135 tcgacaccgttagtgtaaaa-aatataggacaccgacaccgctaaatatata 185  Q
    ||||||||| || ||||||| ||||||||||||||||||||||| |||||||    
T  35529482 tcgacaccgctaatgtaaaaaaatataggacaccgacaccgctacatatata 35529533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Complemental strand, 40289851 - 40289806
Alignment:
Q  152 aaaaatataggacaccgacaccgctaaatatatattaatttattta 197  Q
    |||||||||  ||||||||||||||| |||||| ||||||||||||    
T  40289851 aaaaatataaaacaccgacaccgctacatatatgttaatttattta 40289806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 117 - 431
Target Start/End: Original strand, 32740747 - 32741066
Alignment:
Q  117 gacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||| ||||||| ||  |||||||  ||| ||||||||||||||||||| |||||| ||| |||||| ||||||||| || ||| || |||||||||||    
T  32740747 gacactgacacggtcatatcgacactattaatgtaaaaaatataggacactgacaccactacatatatgttaatttatctaaaga-tggtctaaaatgaa 32740845  T
Q  217 aatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcaca--gcatttaacatttatttattcat 304  Q
    ||| |||||||||          ||||||||||||| |||||| || ||||||||||    |||||||||||| |  | |||| || |||||||||||||    
T  32740846 aattaaaatacatatataaacatctaacttgagcaatttatttaattagaaaaagttc---aacaagatatcatatagtatttgacctttatttattcat 32740942  T
Q  305 ctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaag 404  Q
    |||  |||||||||||||||||||  ||||||||   |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |    
T  32740943 ctaccatcaaaaaagctaaaaatg--ataatcaattgtaatgtctataacc-cccaattgatcaacatttcacaaaacatatgtaactcttgtatctatg 32741039  T
Q  405 gaatgtggaagcaagagagacaaaaat 431  Q
    |  ||||||||||||||||| ||||||    
T  32741040 gtgtgtggaagcaagagagaaaaaaat 32741066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 76 - 401
Target Start/End: Original strand, 23431728 - 23432063
Alignment:
Q  76 tatgaagcatggactccgacatggacacctgacatgacactgacacggacacggacacttcgacaccgttagtgtaaaaaa-tataggacaccgacaccg 174  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||  ||||      ||| |||| | |||||||||||| ||||||| |||||||  |    
T  23431728 tatgaagcatggactccgacacggacacctgatacgacactgacacaaacac------ttcaacactggtagtgtaaaaaaatataggataccgacagtg 23431821  T
Q  175 ctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagtta 264  Q
    ||| |||||| |||||||||||||| || | ||||||||||||||||||||||||          ||||||||||||| ||||||||| ||||||||||     
T  23431822 ctacatatatgttaatttatttatatacgg-tctaaaatgaaaatcaaaatacatatataagcatctaacttgagcaagttatttcattagaaaaagttc 23431920  T
Q  265 taaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaa-------tgtctataacctc 357  Q
    |||||||| |||||  || |||| ||||| ||||||||||||| ||||||||||| |||||||||||||||| ||| |||       ||||||| ||| |    
T  23431921 taaaacaaaatatcgtagtatttgacattcatttattcatctactatcaaaaaagttaaaaatgttataatctacggtaatgtctattgtctattacccc 23432020  T
Q  358 ccaattgatcaacatttctcaaaacatatgtaactcttgtatct 401  Q
    | ||||| || ||| |||||||||||||||||||||||||||||    
T  23432021 ctaattgttc-acacttctcaaaacatatgtaactcttgtatct 23432063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 117 - 438
Target Start/End: Complemental strand, 9149261 - 9148935
Alignment:
Q  117 gacacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaa 216  Q
    ||||||||||||||||| ||||||||| |  |||||||||||||||| |  ||||| ||||  ||| |  ||||||||||||| || ||| ||| |||||    
T  9149261 gacacggacacggacacatcgacaccgcttatgtaaaaaatataggaaaatgacactgctacttatgt--taatttatttataaac-gatataatatgaa 9149165  T
Q  217 aatcaaaatacat----------ctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatct 306  Q
    |||||||||||||          |||||||||| || ||||||||| |||||||  | ||||||||||||||| || |||| || |||||||||| ||||    
T  9149164 aatcaaaatacatatataagaatctaacttgagaaatttatttcattagaaaaaagtttaaaacaagatatcatagtattttacctttatttatttatct 9149065  T
Q  307 attatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaagga 406  Q
    | |||||||||||||||||||||||||  |||| |||||||||||||||  |||||||||| ||||||||  || |||| ||||||||||||||||        
T  9149064 actatcaaaaaagctaaaaatgttatagccaactttaatgtctataacc-accaattgatctacatttct-taatcatacgtaactcttgtatctacaat 9148967  T
Q  407 atgtggaagcaagagagacaaaaatgtttcag 438  Q
     || |||||||||||| | |||||||||||||    
T  9148966 ttgcggaagcaagagataaaaaaatgtttcag 9148935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 148 - 439
Target Start/End: Complemental strand, 48632812 - 48632518
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacatc----------taacttg 237  Q
    ||||||||||||||||||||  |||||||| | ||||||||||||||||||       ||||||| |||||||||||| |||           |||||||    
T  48632812 tgtaaaaaatataggacaccatcaccgctacacatatattaatttatttatc------tctaaaacgaaaatcaaaattcatacataagaatttaacttg 48632719  T
Q  238 agcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatca 337  Q
    ||||  |||||||||   |||||||| |||||||||||| || || |||| || ||||||||||| |||| |||||||||||||||||| ||| ||||||    
T  48632718 agcagtttatttcattgaaaaaagttctaaaacaagataccatagtatttgacctttatttattcttctactatcaaaaaagctaaaaacgttgtaatca 48632619  T
Q  338 acgttaatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaatgtttca 437  Q
    || ||||| ||||||||| |  |||||||||||||||||||| ||||||| |||||||||||||| ||  ||| ||| ||||||| | ||||||||||||    
T  48632618 actttaatttctataaccccgtaattgatcaacatttctcaacacatatgcaactcttgtatctacggtgtgtagaaccaagaga-aaaaaaatgtttca 48632520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 148 - 402
Target Start/End: Complemental strand, 7021806 - 7021540
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaata----------catctaacttg 237  Q
    |||||||||||||||| ||| | ||||||  ||||||||||||||||||||| || | | |||||||||||||||||||          |||||||||||    
T  7021806 tgtaaaaaatataggataccaataccgcttcatatatattaatttatttataaacggtt-taaaatgaaaatcaaaatatatacataaacatctaacttg 7021708  T
Q  238 agcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaa-gctaaaaatgttataatc 336  Q
     |||| |||||| ||   |||||||| |||||||| ||| ||||  |||| || |||||||||| ||||| |||||||||| || ||||||||| |||||    
T  7021707 cgcaatttattttattgaaaaaagttctaaaacaaaataccacaagatttgacctttatttatttatctactatcaaaaaaagccaaaaatgttgtaatc 7021608  T
Q  337 aacgtta--atgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 402  Q
    ||| |||  || |||||||||  | |||| ||||||||||||||| ||||||||||||||| ||||||    
T  7021607 aactttataatttctataacccgctaatttatcaacatttctcaacacatatgtaactcttatatcta 7021540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 292 - 394
Target Start/End: Original strand, 126333 - 126435
Alignment:
Q  292 tttatttattcatctattatcaaaaaagctaaaaatgttataatcaacgttaatgtctataacctccc-aattgatcaacatttctcaaaacatatgtaa 390  Q
    |||||||||||||||| ||| ||||| | ||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  126333 tttatttattcatctactattaaaaa-gttaaaaatgttataatcaactttaatgtctataacccccctaattgatcaacatttctcaaaacatatgtaa 126431  T
Q  391 ctct 394  Q
    ||||    
T  126432 ctct 126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 227 - 339
Target Start/End: Original strand, 18476522 - 18476635
Alignment:
Q  227 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcattt-aacatttatttattcatctattatcaaaaaagctaaaa 325  Q
    |||||||||||||||| ||||||||| |||||||||| |||| |||||||||  || |||| | | |||||||||||||||| |||||||||||||||||    
T  18476522 catctaacttgagcaagttatttcattagaaaaagttctaaagcaagatatcgtagtatttgaccttttatttattcatctactatcaaaaaagctaaaa 18476621  T
Q  326 atgttataatcaac 339  Q
    || || ||||||||    
T  18476622 atattgtaatcaac 18476635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 227 - 379
Target Start/End: Original strand, 3954966 - 3955117
Alignment:
Q  227 catctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaa 326  Q
    |||||||||||||||| ||||||||| | |||||||| ||||| ||||||  |  | |||| || ||||||||| |||||| |||| |||||||||||||    
T  3954966 catctaacttgagcaatttatttcattaaaaaaagttctaaaataagatacgatcgtatttgacctttatttatccatctactatcgaaaaagctaaaaa 3955065  T
Q  327 tgttataatcaacgttaatgtctataacctcccaattgatcaacatttctcaa 379  Q
     ||| |||||||| ||||| ||| ||||| ||   ||||||||||||||||||    
T  3955066 cgttgtaatcaactttaatctctgtaacc-ccttgttgatcaacatttctcaa 3955117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 430
Target Start/End: Original strand, 18488339 - 18488427
Alignment:
Q  342 taatgtctataacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatctaaggaatgtggaagcaagagagacaaaaa 430  Q
    |||||||||| |||||| |||| ||||||||||||||||||| |||||||||||| ||||| |  |||||||||||||||||| |||||    
T  18488339 taatgtctattacctccaaattaatcaacatttctcaaaacacatgtaactcttggatctacgatatgtggaagcaagagagaaaaaaa 18488427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 10171708 - 10171639
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaattt 192  Q
    ||||| || |||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  10171708 gacactgaaacttcgacaccgctagtgtaaaaaatataggacaccgacaccgctacatatatgttaattt 10171639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 16426330 - 16426411
Alignment:
Q  118 acacggacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttata 199  Q
    |||| ||||||||||| || ||||||||| ||||||||  ||||||||| ||||||||||  ||||||||||||||||||||    
T  16426330 acactgacacggacacgtcaacaccgttaatgtaaaaagcataggacactgacaccgctacctatatattaatttatttata 16426411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 378
Target Start/End: Original strand, 3387675 - 3387821
Alignment:
Q  231 taacttgagcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgtt 330  Q
    |||||||| ||| |||||| || | |||||||| || |||||||||  | || |||| || ||||||||||||||||  ||| |||||  |||||| |||    
T  3387675 taacttgaacaatttattttattaaaaaaagttctataacaagataaaatagtatttgacctttatttattcatctaccatcgaaaaatttaaaaacgtt 3387774  T
Q  331 ataatcaacgttaatgtctataacctcccaattgatcaacatttctca 378  Q
     |||||||| ||||||||||||||| |   ||||||||||||||||||    
T  3387775 gtaatcaactttaatgtctataacc-cttgattgatcaacatttctca 3387821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 30883292 - 30883217
Alignment:
Q  123 gacacggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttat 198  Q
    ||||| ||||| || |||||| || ||||||||| |||||||||||||||||||  ||||||||| ||| ||||||    
T  30883292 gacactgacacgtcaacaccgctaatgtaaaaaacataggacaccgacaccgctgcatatatatttattaatttat 30883217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 50127569 - 50127497
Alignment:
Q  127 cggacacttcgacaccgttagtgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttata 199  Q
    ||||||| |||| || | || ||||||||| |||||||| || ||||||||  ||||||||||||||||||||    
T  50127569 cggacacgtcgatactgctaatgtaaaaaacataggacatcgccaccgctatctatatattaatttatttata 50127497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 125194 - 125245
Alignment:
Q  228 atctaacttgagcaaattatttcatcagaaaaagttataaaacaagatatca 279  Q
    ||||||||||||||| ||||||||| | |||||||| |||||||||| ||||    
T  125194 atctaacttgagcaatttatttcattaaaaaaagttttaaaacaagaaatca 125245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 148 - 384
Target Start/End: Original strand, 12806 - 13051
Alignment:
Q  148 tgtaaaaaatataggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaataca----------tctaacttg 237  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||  |  ||||||||||||||||||||||          | |||||||    
T  12806 tgtaaaaaatacaggacaccgacaccgctacatatatattaatttatttacagaaggc-ctaaaatgaaaatcaaaatacaaacataagaatttaacttg 12904  T
Q  238 agcaaattatttcatcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaaaaaagctaaaaatgttataatca 337  Q
    ||||| ||||||||||  ||||||||  |||||||||| ||  || |||| ||||||||||||||||||| ||||||||||||||||||  || ||||||    
T  12905 agcaatttatttcatcgaaaaaagttcgaaaacaagatgtcctagtatttgacatttatttattcatctactatcaaaaaagctaaaaacattgtaatca 13004  T
Q  338 acgttaatgtctataacctcccaattgatcaacatttctcaaaacat 384  Q
    || ||||| |||||||||||| ||||||||||| |||||||| ||||    
T  13005 actttaatttctataacctcctaattgatcaacgtttctcaacacat 13051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 256 - 402
Target Start/End: Complemental strand, 70190 - 70042
Alignment:
Q  256 aaaaagttataaaacaagatatcacagcatttaacatttatttattcatctattatcaa-----aaaagctaaaaatgttataatcaacgttaatgtcta 350  Q
    |||||||| ||||||||||||||| || |||| ||||||||||||||||||| ||| ||     |||||||||||||||   ||||||| ||||| ||||    
T  70190 aaaaagttctaaaacaagatatcatagtatttgacatttatttattcatctaatataaagaaaaaaaagctaaaaatgt---aatcaactttaatttcta 70094  T
Q  351 taacctcccaattgatcaacatttctcaaaacatatgtaactcttgtatcta 402  Q
    |||||  | |||||||||||||||||||| |||||||||| |||||||||||    
T  70093 taaccctctaattgatcaacatttctcaacacatatgtaattcttgtatcta 70042  T

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Target: scaffold1723 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1723
Description:

Target: scaffold1723; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 306
Target Start/End: Complemental strand, 557 - 404
Alignment:
Q  161 ggacaccgacaccgctaaatatatattaatttatttatagactgatctaaaatgaaaatcaaaatacat---------ctaacttgagcaaattatttca 251  Q
    |||||||||||||||||  |||||||||||||||||||| |  ||||| || | | |||||||||||||         ||||||||||||||||||||||    
T  557 ggacaccgacaccgctatctatatattaatttatttataaaa-gatcttaattaagaatcaaaatacataatatgcatctaacttgagcaaattatttca 459  T
Q  252 tcagaaaaagttataaaacaagatatcacagcatttaacatttatttattcatct 306  Q
    | | ||||| || || |||||||||  | || |||| || ||||||||| |||||    
T  458 ttaaaaaaaattctataacaagatacaatagtatttgacctttatttatccatct 404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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